BAC Information

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BAC

Clone NameB6Ng01-152C20
Chromosome7 (Build37)
Map Location 3,685,877 - 3,982,204
singlet/doubletdoublet
Overlap genePira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3
Downstream geneTtyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152C20.bB6Ng01-152C20.g
ACCDH947815DH947816
length1,0911,043
definitionDH947815|Mus musculus domesticus DNA, BAC clone: B6Ng01-152C20, 5' end.DH947816|Mus musculus domesticus DNA, BAC clone: B6Ng01-152C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,981,108 - 3,982,204)(3,685,877 - 3,686,929)
sequence
gaattccaataggcctgccttcatgtgttacttggccttttcctgtgcag
cttttaatattattctttgttctgtgtttagttttttgattattattatt
ttatccagaagcctttatttatgttttatcccagaggcttcacttgttta
tcccagagtcttttctggacctgtgaactaggcatcatgcaccttaattt
ttcaaaattatttttaattaaaatataattgcataatattccccatctct
ataaccttaaccccttttatattcctcctttttattatccctctcaaatc
catggccgccttctttattattcacacacacacacactcacacaacgtgc
tgtttaatgcttagtgtagtttatttgtatgtgcttttagagattactaa
atcatattggatagccaattaagggctcatctctgggggaaaactaattt
tactctcttagcagtcattaaatacattaaatactctttatctagaattg
gcaccctgtaagatccttcagctaagctcagatatcaactgatgtttttg
ttcagggcatgtttaagtagccatacttttgatgtatcatgtgtgtagtt
tccatgttatatcaatgtttgcttctccttgtccctgtttgctatgtgca
aggaatttactcttgtctcttggatctcagtggaagtattccttctttgt
catccaagggagtgcatctctgatctcacctgtctcttgagagttatatg
ctcatctccttacattagttgcagccttgctgccattatattggacaatt
cttttctcaacatcaattttccctcccatactttcccttcaaatggaaga
aattgtgttcttatataagtcaaaccacggaatcatagaaagcatctcta
gaagatattaacatggtaaaggatgagtcaagggaggagagcagactaga
gaatgttggtctaaaggcacataatatcatttgctcataattatgacagg
aggcatattgtgcagtagcactattacatttgtaagcttggaaactgata
agggcaggggcgtatatattcacaaaaggaaattcacatgc
gaattctgtctgacatggattaggtatggatttgaatctgttttcatcag
atttcaacaggctttgtaattattacacctctcccagaggcaccataggc
catggctacactgagagcgagggtctgacagggatcctgtgaatattgtt
tatttgagagtgaggagaagaggttggcaatgggaaccagtccctgcata
ggatcctatatatgtctgtggcctccccaaaatggttttttctaactaca
tgaaatcttcggattccattatcagggggcatccctagaatgattcaggt
tgcctcgcaccctcatgagggtgaatacccatctgactgacactctgcag
cttttaaaccctatgctcgctaatatttattgtaaatggaaaatactgag
acacccctttatctcagaaagatctagattttctttcctttgaccatgaa
ctgcagagtcagtgctgtatgacaacacattggaagataggtatgtatag
cacctgaagatgctcctaagggtggatgtcacagactcatagaggatctt
agaattatgccccatgagctagactgaaggagcctgagtcccccaccatg
gctatttgacccacccttgccatgcatcagtagactgtgggctagactga
ctgcagaatcaagttctggggatctcctctatcaggagaggtaacagctt
caatcatcaccaaaaatacacagacacgtgaaccaggcttctcccattca
tactcagagaaggagcagcccagcaatggaaagggactgtccaagtagga
cctccagctgcagctttatcaggatataagcagctttacccatctgagcc
tacattccaacagagtctttgttagtaatcccgtgacagatctgtgcagg
ggaaatgtttgttctagggatatatggggagtgactttctaggtctttgc
tcacatcttacccagctggtctcacatccaagggaaggctaatgccttcc
tttggatgctaccttctggtgcgcacagtaagcccagcctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3981108_3982204
seq2: B6Ng01-152C20.b_39_1129 (reverse)

seq1  GCATGTGAATTTACCTTTTTGTGAATATTTACCGCCCCTGCCCTTATCAG  50
      ||||||||||||  | |||||||||||| || ||||||||||||||||||
seq2  GCATGTGAATTT--CCTTTTGTGAATATATA-CGCCCCTGCCCTTATCAG  47

seq1  TTTCCAAGCTTACAAATGT-ATAGTTGCTACTGCACAATATGCCTCCTGT  99
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  TTTCCAAGCTTACAAATGTAATAG-TGCTACTGCACAATATGCCTCCTGT  96

seq1  CATTATTTATGAGCAAATGATATTATGTGCCTTTAGACCAACATTCTCTA  149
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-TAATTATGAGCAAATGATATTATGTGCCTTTAGACCAACATTCTCTA  145

seq1  GTCTGCTCTCCTCCCTTGACTCATTCTTTTACCATGTTTAATATCTTCTA  199
      ||||||||||||||||||||||| || ||||||||| |||||||||||||
seq2  GTCTGCTCTCCTCCCTTGACTCA-TCCTTTACCATG-TTAATATCTTCTA  193

seq1  GAGATGCTTTCTATGATTCCGTGGTTTGACTTATATAAGAACACAATTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTTTCTATGATTCCGTGGTTTGACTTATATAAGAACACAATTTC  243

seq1  TTCCATTTGAAGGGAAAGTATGGGAGGGAAAATTGATGTTGAGAAAAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTGAAGGGAAAGTATGGGAGGGAAAATTGATGTTGAGAAAAGAA  293

seq1  TTGTCCAATATAATGGCAGCAAGGCTGCAACTAATGTAAGGAGATGAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAATATAATGGCAGCAAGGCTGCAACTAATGTAAGGAGATGAGCA  343

seq1  TATAACTCTCAAGAGACAGGTGAGATCAGAGATGCACTCCCTTGGATGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTCTCAAGAGACAGGTGAGATCAGAGATGCACTCCCTTGGATGAC  393

seq1  AAAGAAGGAATACTTCCACTGAGATCCAAGAGACAAGAGTAAATTCCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGAATACTTCCACTGAGATCCAAGAGACAAGAGTAAATTCCTTG  443

seq1  CACATAGCAAACAGGGACAAGGAGAAGCAAACATTGATATAACATGGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCAAACAGGGACAAGGAGAAGCAAACATTGATATAACATGGAAA  493

seq1  CTACACACATGATACATCAAAAGTATGGCTACTTAAACATGCCCTGAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACATGATACATCAAAAGTATGGCTACTTAAACATGCCCTGAACA  543

seq1  AAAACATCAGTTGATATCTGAGCTTAGCTGAAGGATCTTACAGGGTGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCAGTTGATATCTGAGCTTAGCTGAAGGATCTTACAGGGTGCCA  593

seq1  ATTCTAGATAAAGAGTATTTAATGTATTTAATGACTGCTAAGAGAGTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATAAAGAGTATTTAATGTATTTAATGACTGCTAAGAGAGTAAA  643

seq1  ATTAGTTTTCCCCCAGAGATGAGCCCTTAATTGGCTATCCAATATGATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTTTCCCCCAGAGATGAGCCCTTAATTGGCTATCCAATATGATTT  693

seq1  AGTAATCTCTAAAAGCACATACAAATAAACTACACTAAGCATTAAACAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTCTAAAAGCACATACAAATAAACTACACTAAGCATTAAACAGC  743

seq1  ACGTTGTGTGAGTGTGTGTGTGTGTGAATAATAAAGAAGGCGGCCATGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTGTGAGTGTGTGTGTGTGTGAATAATAAAGAAGGCGGCCATGGA  793

seq1  TTTGAGAGGGATAATAAAAAGGAGGAATATAAAAGGGGTTAAGGTTATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGGGATAATAAAAAGGAGGAATATAAAAGGGGTTAAGGTTATAG  843

seq1  AGATGGGGAATATTATGCAATTATATTTTAATTAAAAATAATTTTGAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGAATATTATGCAATTATATTTTAATTAAAAATAATTTTGAAAA  893

seq1  ATTAAGGTGCATGATGCCTAGTTCACAGGTCCAGAAAAGACTCTGGGATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTGCATGATGCCTAGTTCACAGGTCCAGAAAAGACTCTGGGATA  943

seq1  AACAAGTGAAGCCTCTGGGATAAAACATAAATAAAGGCTTCTGGATAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTGAAGCCTCTGGGATAAAACATAAATAAAGGCTTCTGGATAAAA  993

seq1  TAATAATAATCAAAAAACTAAACACAGAACAAAGAATAATATTAAAAGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATCAAAAAACTAAACACAGAACAAAGAATAATATTAAAAGCT  1043

seq1  GCACAGGAAAAGGCCAAGTAACACATGAAGGCAGGCCTATTGGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGAAAAGGCCAAGTAACACATGAAGGCAGGCCTATTGGAATTC  1091

seq1: chr7_3685877_3686929
seq2: B6Ng01-152C20.g_68_1110

seq1  GAATTCTGTCTGACATGGATTAGGTATGGATTTGAATCTGTTTTCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGACATGGATTAGGTATGGATTTGAATCTGTTTTCATCAG  50

seq1  ATTTCAACAGGCTTTGTAATTATTACACCTCTCCCAGAGGCACCATAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACAGGCTTTGTAATTATTACACCTCTCCCAGAGGCACCATAGGC  100

seq1  CATGGCTACACTGAGAGCGAGGGTCTGACAGGGATCCTGTGAATATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTACACTGAGAGCGAGGGTCTGACAGGGATCCTGTGAATATTGTT  150

seq1  TATTTGAGAGTGAGGAGAAGAGGTTGGCAATGGGAACCAGTCCCTGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGAGTGAGGAGAAGAGGTTGGCAATGGGAACCAGTCCCTGCATA  200

seq1  GGATCCTATATATGTCTGTGGCCTCCCCAAAATGGTTTTTTCTAACTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTATATATGTCTGTGGCCTCCCCAAAATGGTTTTTTCTAACTACA  250

seq1  TGAAATCTTCGGATTCCATTATCAGGGGGCATCCCTAGAATGATTCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTTCGGATTCCATTATCAGGGGGCATCCCTAGAATGATTCAGGT  300

seq1  TGCCTCGCACCCTCATGAGGGTGAATACCCATCTGACTGACACTCTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCGCACCCTCATGAGGGTGAATACCCATCTGACTGACACTCTGCAG  350

seq1  CTTTTAAACCCTATGCTCGCTAATATTTATTGTAAATGGAAAATACTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAACCCTATGCTCGCTAATATTTATTGTAAATGGAAAATACTGAG  400

seq1  ACACCCCTTTATCTCAGAAAGATCTAGATTTTCTTTCCTTTGACCATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCTTTATCTCAGAAAGATCTAGATTTTCTTTCCTTTGACCATGAA  450

seq1  CTGCAGAGTCAGTGCTGTATGACAACACATTGGAAGATAGGTATGTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGTCAGTGCTGTATGACAACACATTGGAAGATAGGTATGTATAG  500

seq1  CACCTGAAGATGCTCCTAAGGGTGGATGTCACAGACTCATAGAGGATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAAGATGCTCCTAAGGGTGGATGTCACAGACTCATAGAGGATCTT  550

seq1  AGAATTATGCCCCATGAGCTAGACTGAAGGAGCCTGAGTCCCCCACCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATGCCCCATGAGCTAGACTGAAGGAGCCTGAGTCCCCCACCATG  600

seq1  GCTATTTGACCCACCCTTGCCATGCATCAGTAGACTGTGGGCTAGACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGACCCACCCTTGCCATGCATCAGTAGACTGTGGGCTAGACTGA  650

seq1  CTGCAGAATCAAGTTCTGGGGATCTCCTCTATCAGGAGAGGTAACAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAATCAAGTTCTGGGGATCTCCTCTATCAGGAGAGGTAACAGCTT  700

seq1  CAATCATCACCAAAAATACACAGACACGTGAACCAGGCTTCTCCCATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCACCAAAAATACACAGACACGTGAACCAGGCTTCTCCCATTCA  750

seq1  TACTCAGAGAAGGAGCAGCCCAGCAATGG-AAGGGACTGTCCAAGTAGGA  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TACTCAGAGAAGGAGCAGCCCAGCAATGGAAAGGGACTGTCCAAGTAGGA  800

seq1  CCTCCAGCTGCAGCTTTATCAGGATATAAGCAGCTTTACCCATCTGAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCTGCAGCTTTATCAGGATATAAGCAGCTTTACCCATCTGAGCC  850

seq1  TACATTCCAACAGAGTCTTTGTTAGTAATCCCGGGACAGATTCTGTGCAG  899
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  TACATTCCAACAGAGTCTTTGTTAGTAATCCCGTGACAGA-TCTGTGCAG  899

seq1  GGGAAATGTTTGTTTCTTAGGGATATTATGGGGAGGTGACTTTCTAGGTT  949
      ||||||||||||||   |||||||| |||||||| ||||||||||||| |
seq2  GGGAAATGTTTGTT--CTAGGGATA-TATGGGGA-GTGACTTTCTAGG-T  944

seq1  CTTTGCTCACAATCTTACCCAGCT-GTCTCATCATCCAAGTGGAGGCTCA  998
      |||||||||| ||||||||||||| |||||| |||||||| | ||||| |
seq2  CTTTGCTCAC-ATCTTACCCAGCTGGTCTCA-CATCCAAGGGAAGGCT-A  991

seq1  ATGCCTCTCTTTGGATGCTACCTTCTGTAGCCGAACAGTTAAGCCCCAGC  1048
      ||||||  |||||||||||||||||||  | || |||| |||| ||||||
seq2  ATGCCTTCCTTTGGATGCTACCTTCTGGTG-CGCACAG-TAAG-CCCAGC  1038

seq1  CTCTG  1053
      |||||
seq2  CTCTG  1043