BAC Information

Click to search

BAC

Clone NameB6Ng01-152D23
Chromosome7 (Build37)
Map Location 88,975,752 - 89,144,281
singlet/doubletdoublet
Overlap geneTm6sf1, LOC100043161, Hdgfrp3, Bnc1
Upstream geneLOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1
Downstream geneSh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152D23.bB6Ng01-152D23.g
ACCDH947867DH947868
length1,1091,121
definitionDH947867|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D23, 5' end.DH947868|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,975,752 - 88,976,875)(89,143,141 - 89,144,281)
sequence
gaattccagaccagccagggagaccctgttccaaaaatactaagtaaata
aaaataccctacagggccagagagatggctcagcaggtaaaggtactttc
tgctaagactaaagaactgaatttcatcctgagagagaccgattggctgt
cctctgcactccacaagcactgtggtactccaggatatgtatagatctac
agatacacaaaaatgagtaattaaaaaaaaataaactacaaaaagagcag
ggcacagtggcccatgcctttaatcccagaattagggaggcggaggcagg
cagctttctgtgagttccggaccaacctggtctacaaagcaagttcctac
tcagcctgggctacagagtgagaccttgtctcaaaaccaaccaaccaacc
aacaacagcaaaaattccaaaactagcttctgtcaggtccaaagctccac
ttcctccaaaatggcaatgctagtgacattgtcctaaacaaggattttgg
gtaaacagaggattgtttatctgtaaacaagcctaaaggtttctatttac
tagaaaagcagatctcttaaagtggttgctattcaccaagaatctccctt
aatcttccaggaatctgctgggtggtagtgtctcaagctcacatacacac
ttaggctttaattctagcagggaggcagaggcaggttgatctctaagttc
taggccagccttatctacagagccagttccaagacagccagtgcaataca
gagaaaccttctcctaaaaaaaaaaaaaaaaaattaaaaatcctccagaa
accttttcttaatcttcccccaaaggtcaactacctcaggcaagggcacc
tagtttgagatcaacccaaacaacctctatcagctcagattccccacccc
tatgatggtcacataaatctactgcttttccaccatttgctcttctctct
gccctaatcccccttgtagtttttctgagtcactgtttatatctccatac
tatgttttactgtattgtcaatgaaaatcttaaacatgagttctgttaca
gaaatactagacttatggtttagcaatatgttattggatgccattcagat
gtgacactc
gaattcagtgaacatgccagatctgtttcctgtatcatgtctcttgcttg
cttactagccttttgataaaccattagagctgtggcgttttgttaattac
caaactcctggtgacagactgaacttgcctgttaaaacttgtgttgtaat
ttgaggattaaaagccacacctctgggaaatggaagtatcagaactgatt
tggtgttggagacaaaagtgttagaagccacagttcaacaaagtggattt
tccgggcacagttagcaatgacatttttagaagtcttacatcgtgtcatt
gatgggaatgaaattttaagagtctacaaatccagaatgtgccatttaag
tctcctcacccacactggtataggtaaagtccttcttttttcaaagcacc
tcctatgtacgtaaaagcattgcactgtgccagatacagtaaaaatcgga
agtccttacccatcacattctcaaaatccagtgaagaaaagcctcttcta
aaagttaaagtattggtccatgtatgtctcagagtatttttttttccttt
tactttggctgaaggaaaagaacatggctatagccagaaggagactctac
ctggaagaaccttgcctggcctcgggtttatgaatcatgggtctatgtca
aagattcctaacctcctaacgccaatgctacttaaaagttccaagactga
gccaagaatggctcctgggacgccggcgctctgctttttcttccacctag
gacctcgtagccacagtgggcatgagtgtctgtgttttggttgaacagct
ctttattggaaaccatctccatttaaatgacgagagtaatttaatttcag
attttccgggggccacggactttgggaacgcttaatcagagtttcacctg
gtcctcccatgatttgagtcttgcctgtcagtgcattaccagactgaccc
tcattgtcacaaagtgatgacagtagcaacgagtgtccacagagtcacag
agtcaagaagtctcttctcacatctacggattaaaaaaagtgttttgctc
taattcacaaagtccaagcctataaatgagtgagtgtttacctagaccta
gctctgtgtgggaaaacccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_88975752_88976875
seq2: B6Ng01-152D23.b_45_1153

seq1  GAATTCCAGACCAGCCAGGGAGACCCTGTTCCAAAAATACTAAGTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCAGCCAGGGAGACCCTGTTCCAAAAATACTAAGTAAATA  50

seq1  AAAATACCCTACAGGGCCAGAGAGATGGCTCAGCAGGTAAAGGTACTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCCTACAGGGCCAGAGAGATGGCTCAGCAGGTAAAGGTACTTTC  100

seq1  TGCTAAGACTAAAGAACTGAATTTCATCCTGAGAGAGACCGATTGGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGACTAAAGAACTGAATTTCATCCTGAGAGAGACCGATTGGCTGT  150

seq1  CCTCTGCACTCCACAAGCACTGTGGTACTCCAGGATATGTATAGATCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCACTCCACAAGCACTGTGGTACTCCAGGATATGTATAGATCTAC  200

seq1  AGATACACAAAAATGAGTAATTAAAAAAAAATAAACTACAAAAAGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACAAAAATGAGTAATTAAAAAAAAATAAACTACAAAAAGAGCAG  250

seq1  GGCACAGTGGCCCATGCCTTTAATCCCAGAATTAGGGAGGCGGAGGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTGGCCCATGCCTTTAATCCCAGAATTAGGGAGGCGGAGGCAGG  300

seq1  CAGCTTTCTGTGAGTTCCGGACCAACCTGGTCTACAAAGCAAGTTCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCTGTGAGTTCCGGACCAACCTGGTCTACAAAGCAAGTTCCTAC  350

seq1  TCAGCCTGGGCTACAGAGTGAGACCTTGTCTCAAAACCAACCAACCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGGGCTACAGAGTGAGACCTTGTCTCAAAACCAACCAACCAACC  400

seq1  AACAACAGCAAAAATTCCAAAACTAGCTTCTGTCAGGTCCAAAGCTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGCAAAAATTCCAAAACTAGCTTCTGTCAGGTCCAAAGCTCCAC  450

seq1  TTCCTCCAAAATGGCAATGCTAGTGACATTGTCCTAAACAAGGATTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAAAATGGCAATGCTAGTGACATTGTCCTAAACAAGGATTTTGG  500

seq1  GTAAACAGAGGATTGTTTATCTGTAAACAAGCCTAAAGGTTTCTATTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAGAGGATTGTTTATCTGTAAACAAGCCTAAAGGTTTCTATTTAC  550

seq1  TAGAAAAGCAGATCTCTTAAAGTGGTTGCTATTCACCAAGAATCTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGCAGATCTCTTAAAGTGGTTGCTATTCACCAAGAATCTCCCTT  600

seq1  AATCTTCCAGGAATCTGCTGGGTGGTAGTGTCTCAAGCTCACATACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCAGGAATCTGCTGGGTGGTAGTGTCTCAAGCTCACATACACAC  650

seq1  TTAGGCTTTAATTCTAGCAGGGAGGCAGAGGCAGGTTGATCTCTAAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTTAATTCTAGCAGGGAGGCAGAGGCAGGTTGATCTCTAAGTTC  700

seq1  TAGGCCAGCCTTATCTACAGAGCCAGTTCCAAGACAGCCAGTGCAATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAGCCTTATCTACAGAGCCAGTTCCAAGACAGCCAGTGCAATACA  750

seq1  GAGAAACCTTCTCCTAAAAAAAAAAAAAAAAAATTAAAAATCCTCCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCTTCTCCTAAAAAAAAAAAAAAAAAATTAAAAATCCTCCAGAA  800

seq1  ACC-TTTCTTAATCTTCCCCCAAAGGTCAACTACCTCAGGCAAGGGCACC  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCTTAATCTTCCCCCAAAGGTCAACTACCTCAGGCAAGGGCACC  850

seq1  TAGTTTGAGATCAACCCAAACAACCTCTATCAGCTCAGATTCCCCACCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAGATCAACCCAAACAACCTCTATCAGCTCAGATTCCCCACCCC  900

seq1  TATGATGGTCACATAAAATCTACTGCTTTTCCACCATTTGCTCTTCTCTC  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATGATGGTCACAT-AAATCTACTGCTTTTCCACCATTTGCTCTTCTCTC  949

seq1  TGCCCTAAATCCCCCTTGGTAGTTTTTCTGAGTCACTGTTTATATCTCCA  999
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCCCT-AATCCCCCTT-GTAGTTTTTCTGAGTCACTGTTTATATCTCCA  997

seq1  TTACTATGTTTTAACTGTAATTGTAAATGAAAATCTTTAAAACAATGAGT  1049
       ||||||||||| ||||| ||||| ||||||||||||  |||| ||||||
seq2  -TACTATGTTTT-ACTGT-ATTGTCAATGAAAATCTT--AAAC-ATGAGT  1041

seq1  TCTTGTTACAGAAATACATAGACTTATGGGTTTAGCAATAATGTTA-TGG  1098
      || |||||||||||||| ||||||||| ||||||||||| |||||| |||
seq2  TC-TGTTACAGAAATAC-TAGACTTAT-GGTTTAGCAAT-ATGTTATTGG  1087

seq1  ATAGCACATCAGAGATGTGACCACTC  1124
      || ||   ||  |||||||| |||||
seq2  AT-GCCATTC--AGATGTGA-CACTC  1109

seq1: chr7_89143141_89144281
seq2: B6Ng01-152D23.g_69_1189 (reverse)

seq1  AGGGGTTTTTCCCACAACAGGAGTTAGGTCTAGGTAACCCACTCACTCAT  50
      ||||| ||||||||| ||| ||| |||||||||||||  |||||||||| 
seq2  AGGGG-TTTTCCCAC-ACA-GAGCTAGGTCTAGGTAA-ACACTCACTCA-  45

seq1  TTTATAGCCTGGGACTTTGGTGGATTTAAGGAGCAAAACACTTTTTTTAA  100
      ||||||| || ||||||| ||| |||    |||||||||||||||||| |
seq2  TTTATAGGCTTGGACTTT-GTGAATT---AGAGCAAAACACTTTTTTT-A  90

seq1  ACCCGTAGGTGTGAAGAAGAGACTCTGTGACTCCTGTTGGACTCTGT-GA  149
      | |||||| |||| ||||||||||   ||||| ||||  |||||||| ||
seq2  ATCCGTAGATGTG-AGAAGAGACTTCTTGACT-CTGT--GACTCTGTGGA  136

seq1  CACTCGTTGCTACTGTCCTTCACTTTGTGAACAATGAGGGTCAGTCTGGT  199
      |||||||||||||||| | |||||||||| ||||||||||||||||||||
seq2  CACTCGTTGCTACTGT-CATCACTTTGTG-ACAATGAGGGTCAGTCTGGT  184

seq1  AATGCAACTGACAGGCAAAGACTCAAATCATGGGAGGACCAGGTGAAACT  249
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  AATGC-ACTGACAGGC-AAGACTCAAATCATGGGAGGACCAGGTGAAACT  232

seq1  CTGATTAAAGCGTTCCCAAAGTCCGTGGCCCCCGGAAAAATCTGAAAATT  299
      |||||| |||||||||||||||||||||||||||| |||||||| |||||
seq2  CTGATT-AAGCGTTCCCAAAGTCCGTGGCCCCCGG-AAAATCTG-AAATT  279

seq1  AAATTACTCTCGTCATTTAAATGGAGATGGTTTCCAATAAAGAGCTGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTCTCGTCATTTAAATGGAGATGGTTTCCAATAAAGAGCTGTTC  329

seq1  AACCAAAACACAGACACTCATGCCCACTGTGGCTACGAGGTCCTAGGTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACACAGACACTCATGCCCACTGTGGCTACGAGGTCCTAGGTGG  379

seq1  AAGAAAAAGCAGAGCGCCGGCGTCCCAGGAGCCATTCTTGGCTCAGTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGCAGAGCGCCGGCGTCCCAGGAGCCATTCTTGGCTCAGTCTT  429

seq1  GGAACTTTTAAGTAGCATTGGCGTTAGGAGGTTAGGAATCTTTGACATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTTAAGTAGCATTGGCGTTAGGAGGTTAGGAATCTTTGACATAG  479

seq1  ACCCATGATTCATAAACCCGAGGCCAGGCAAGGTTCTTCCAGGTAGAGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGATTCATAAACCCGAGGCCAGGCAAGGTTCTTCCAGGTAGAGTC  529

seq1  TCCTTCTGGCTATAGCCATGTTCTTTTCCTTCAGCCAAAGTAAAAGGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGGCTATAGCCATGTTCTTTTCCTTCAGCCAAAGTAAAAGGAAA  579

seq1  AAAAAATACTCTGAGACATACATGGACCAATACTTTAACTTTTAGAAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATACTCTGAGACATACATGGACCAATACTTTAACTTTTAGAAGAG  629

seq1  GCTTTTCTTCACTGGATTTTGAGAATGTGATGGGTAAGGACTTCCGATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTTCACTGGATTTTGAGAATGTGATGGGTAAGGACTTCCGATTT  679

seq1  TTACTGTATCTGGCACAGTGCAATGCTTTTACGTACATAGGAGGTGCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTATCTGGCACAGTGCAATGCTTTTACGTACATAGGAGGTGCTTT  729

seq1  GAAAAAAGAAGGACTTTACCTATACCAGTGTGGGTGAGGAGACTTAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAAGGACTTTACCTATACCAGTGTGGGTGAGGAGACTTAAATG  779

seq1  GCACATTCTGGATTTGTAGACTCTTAAAATTTCATTCCCATCAATGACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTCTGGATTTGTAGACTCTTAAAATTTCATTCCCATCAATGACAC  829

seq1  GATGTAAGACTTCTAAAAATGTCATTGCTAACTGTGCCCGGAAAATCCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAAGACTTCTAAAAATGTCATTGCTAACTGTGCCCGGAAAATCCAC  879

seq1  TTTGTTGAACTGTGGCTTCTAACACTTTTGTCTCCAACACCAAATCAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAACTGTGGCTTCTAACACTTTTGTCTCCAACACCAAATCAGTT  929

seq1  CTGATACTTCCATTTCCCAGAGGTGTGGCTTTTAATCCTCAAATTACAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACTTCCATTTCCCAGAGGTGTGGCTTTTAATCCTCAAATTACAAC  979

seq1  ACAAGTTTTAACAGGCAAGTTCAGTCTGTCACCAGGAGTTTGGTAATTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTTAACAGGCAAGTTCAGTCTGTCACCAGGAGTTTGGTAATTAA  1029

seq1  CAAAACGCCACAGCTCTAATGGTTTATCAAAAGGCTAGTAAGCAAGCAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGCCACAGCTCTAATGGTTTATCAAAAGGCTAGTAAGCAAGCAAG  1079

seq1  AGACATGATACAGGAAACAGATCTGGCATGTTCACTGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGATACAGGAAACAGATCTGGCATGTTCACTGAATTC  1121