BAC Information

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BAC

Clone NameB6Ng01-153D13
Chromosome7 (Build37)
Map Location 7,078,833 - 7,193,989
singlet/doubletdoublet
Overlap gene2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik
Upstream geneZfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik
Downstream geneClcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153D13.bB6Ng01-153D13.g
ACCDH948596DH948597
length727888
definitionDH948596|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D13, 5' end.DH948597|Mus musculus domesticus DNA, BAC clone: B6Ng01-153D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,193,384 - 7,193,989)(7,078,833 - 7,079,696)
sequence
gaattctctctgaatcatgacaaagcgtggcagtttcccaaaaacccaca
tttgcatgtctatagatcttccaaaacattgaaatctctgacacagctcg
atttttttctcgagaacttgaagatgatttttatattaactcataggatt
aagactaccattgatatcaaaaatcctaacctcttctttcccaagctttt
cttgtaggaacttgtttgacaagtcccttccttctatatctttcttgctg
caaaactgaatatattatctctaacaaattattattatcttgcccgttat
gaagtctttcctgtggtgtggggggggggctcaaaatgtatatctgtgtc
actccacggaaaattttcaacatacgtgtaactctctatatgaaagtgga
actaaccaggggagtattactatgtatgaatttcgttagatgtgtttgtt
tatgtatgtgcatatgtttctttgtggttttgtcagagtaggtttctttg
tgtacattgtatgtattttgtgagtgtttataagtacttattcggatttg
tacctgctttgctgtgtatgagtctgcctatttcttcttacttggcatgg
acattgcctgccattttgtatttaggtatgagtataaatttctctgagtg
tcaatatcattcatggctggtgcttatatatttatgtctctcccagtatt
ttgctgtcatgagtgtgtgtgtgtgtg
gaattcaaatgctgagacatgggtgtgatggatcatcccgttgacagagt
ccttacgcctcctcaagagaaaactgaaactgctgtgcctgctagagctg
attttttctcatctgttttgatactgaagaggaaacaaaatgatgggatg
acatgatggggtcaacaacgagcttgaagaggaaaaaaaaaggaccaata
aaatttgatatttttctcaaaaatacccaaaactttcaaaacagattcag
aaaacgaggttttctcctttcatgatacatcccagcattctggcctctta
ggttaaataggatggaagtgtgggtgaaggttctccacattctcttcctc
tgtgtgtggggatagggcattcatactctgaggcactgggattcactttg
tagaccagactgcacttgaactctcagatccacctgtctgtgtctcctga
gtacttggactgaagacaagtgcctccacttcccagcttggaaaccacaa
ttcctttttgcttgtttgtttgtgttttgaataagcacacatataaacaa
aaattgaaaaagtaaatagtaaaagaaaattagcaaaaccaaaatgtggg
taccaggtgggatggttcccatcttttaccccctttcttgggaggcagag
ggtgtgtggtccactgtgtgttctagaccagcctggtcttcagagggcat
tccaggccagtaggactacacagcgagacactgactaggaaagaataaag
cacgaaagaaagaaagataagatagggaaaataaggataataagagaaaa
caaaatgaaaaggaagtaaggcacctggtgatgagcacaaaaaaggcctg
tctaacagcagtgcttgttctaatgaaacctggtttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7193384_7193989
seq2: B6Ng01-153D13.b_161_768 (reverse)

seq1  CACACACACACACAC---TGACAGCAAAATACTGGGAGAGACATAAATAT  47
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  CACACACACACACACTCATGACAGCAAAATACTGGGAGAGACATAAATAT  50

seq1  ATAAGCACCAGCCATGAATGATATTGACACACAGAGAAATTTATACTCAT  97
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATAAGCACCAGCCATGAATGATATTGACACTCAGAGAAATTTATACTCAT  100

seq1  ACCTAAATACAAAATGGCAGGCAATGTCCATGCCAAGTAAGAAGAAATAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAATACAAAATGGCAGGCAATGTCCATGCCAAGTAAGAAGAAATAG  150

seq1  GCAGACTCATACACAGCAAAGCAGGTACAAATCCGAATAAGTACTTATAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTCATACACAGCAAAGCAGGTACAAATCCGAATAAGTACTTATAA  200

seq1  ACACTCACAAAATACATACAATGTACACAAAGAAACCTACTCTGACAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACAAAATACATACAATGTACACAAAGAAACCTACTCTGACAAAA  250

seq1  CCACAAAGAAACATATGCACATACATAAACAAACACACTTAAAGAAATTC  297
      |||||||||||||||||||||||||||||||||||||  ||| |||||||
seq2  CCACAAAGAAACATATGCACATACATAAACAAACACATCTAACGAAATTC  300

seq1  ATACATAGAAAAAATCTGTTGCTTACTTCCACTTTCATATAGAGATAAAC  347
      |||||||| || | ||   || ||| |||||||||||||||||||   ||
seq2  ATACATAGTAATACTCCCCTGGTTAGTTCCACTTTCATATAGAGAGTTAC  350

seq1  ATGTATGTTGAAAATATCACAAATATAAACACAGATATACATAAAGAGTA  397
      | ||||||||||||| |  |    |   ||||||||||||||   |||  
seq2  ACGTATGTTGAAAATTTTCCGTGGAGTGACACAGATATACATTTTGAGCC  400

seq1  GAAAATATACATATACACAGTGAGAAACAT----ACACTCACACATATAA  443
              |||    ||||| || | || |    ||   || | |||  |
seq2  CCCCCCCCACA---CCACAG-GAAAGACTTCATAACGGGCA-AGATAATA  445

seq1  ACACTTTTCTACAGACAGAACTGAATACCAACACTATTTC--TTGTTTAG  491
      | | |||  || |||        ||||    || | || |        ||
seq2  ATAATTTGTTAGAGA-------TAATATATTCAGTTTTGCAGCAAGAAAG  488

seq1  TTACTCTCAGAAAGCCACAATGTTCTC-CACA---GCCTAC-----ACTC  532
       || |   || |||  ||    || ||  |||    |||||     |  |
seq2  ATA-TAGAAGGAAGGGAC----TTGTCAAACAAGTTCCTACAAGAAAAGC  533

seq1  TTGGCAGAATCACTGGAGACCATTT---ATTAAAATGTTTTCCATATAAC  579
      |||| | ||  |  ||  |  ||||   ||   |||| |   | || | |
seq2  TTGGGA-AAGAAGAGGTTAGGATTTTTGATATCAATGGTAGTCTTA-ATC  581

seq1  TGAAAAATATAGATAAAAATCATCTTC  606
        |  | |  | |||||||||||||||
seq2  CTATGAGTTAATATAAAAATCATCTTC  608

seq1: chr7_7078833_7079696
seq2: B6Ng01-153D13.g_108_956

seq1  GTTGACAGAAATGCCTACGCCTCCTCAAGAGATCAAAGGAAACAGCTGTG  50
      |||||||| | | | |||||||||||||||||  ||  ||||| ||||||
seq2  GTTGACAG-AGTCCTTACGCCTCCTCAAGAGA-AAACTGAAACTGCTGTG  48

seq1  CATGCTAGCACAGATGCAATCTCAGTTTTTATGAGACTGAAAAAGGAGAC  100
      | ||||||  | |||    |||||  | || ||| |||| || |||| ||
seq2  CCTGCTAGAGCTGATTTTTTCTCATCTGTTTTGATACTG-AAGAGGAAAC  97

seq1  AGAAGAGTTTGAGGACATCTTGGGGTCAACAGTGAGCTTCCATAAAAGAA  150
      | ||   |  || |||||  |||||||||||  ||||||    || || |
seq2  AAAATGATGGGATGACATGATGGGGTCAACAACGAGCTT---GAAGAGGA  144

seq1  AAAACAAA--ACCCATAGACTTTGATATTTTTCTCAGAAATACCCAAAAC  198
      |||| |||  ||| ||| | |||||||||||||||| |||||||||||||
seq2  AAAAAAAAGGACCAATAAAATTTGATATTTTTCTCAAAAATACCCAAAAC  194

seq1  TTTCAAAACAGATTCAGAAAACGAGGTTTTCTCCTTTCATGATACATCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAACAGATTCAGAAAACGAGGTTTTCTCCTTTCATGATACATCCC  244

seq1  AGCATTCTGGCCTCTTAGGTTAAATAGGATGGAAGTGTGGGTGAAGGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTGGCCTCTTAGGTTAAATAGGATGGAAGTGTGGGTGAAGGTTC  294

seq1  TCCACATTCTCTTCCTCTGTGTGTGGGGATAGGGCATTCATACTCTGAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTCTCTTCCTCTGTGTGTGGGGATAGGGCATTCATACTCTGAGG  344

seq1  CACTGGGATTCACTTTGTAGACCAGACTGCACTTGAACTCTCAGATCCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGATTCACTTTGTAGACCAGACTGCACTTGAACTCTCAGATCCAC  394

seq1  CTGTCTGTGTCTCCTGAGTACTTGGACTGAAGACAAGTGCCTCCACTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTGTCTCCTGAGTACTTGGACTGAAGACAAGTGCCTCCACTTCC  444

seq1  CAGCTTGGAAACCACAATTCCTTTTTGCTTGTTTGTTTGTGTTTTGAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGAAACCACAATTCCTTTTTGCTTGTTTGTTTGTGTTTTGAATA  494

seq1  AGCACACATATAAACAAAAATTGAAAAAGTAAATAGTAAAAGAAAATTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATATAAACAAAAATTGAAAAAGTAAATAGTAAAAGAAAATTAG  544

seq1  CAAAACCAAAATGTGGGTACCAGGTGGGATGGTTCCCATCTTTAACCCCA  598
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  CAAAACCAAAATGTGGGTACCAGGTGGGATGGTTCCCATCTTTTACCCCC  594

seq1  TTACTTGGGAGGCAGA-GGTGGGTGG-CCACTGTGTGTTCTAGACCAGCC  646
      || ||||||||||||| |||| |||| |||||||||||||||||||||||
seq2  TTTCTTGGGAGGCAGAGGGTGTGTGGTCCACTGTGTGTTCTAGACCAGCC  644

seq1  TGGTCTTCAGAGGGCATTCCAGGCCAGTTAGGACTACACAGTGAGACACT  696
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  TGGTCTTCAGAGGGCATTCCAGGCCAG-TAGGACTACACAGCGAGACACT  693

seq1  GACTAGGAAAGAAAAAAAGAAGGAAAGAAAGAAAGAAAAGAAAAGGAAAA  746
      ||||||||||| || |||| | |||||||||||||| |||| | ||||||
seq2  GACTAGGAAAG-AATAAAGCACGAAAGAAAGAAAGATAAGATAGGGAAAA  742

seq1  AAAGGAAAAGAAGAGAAAAGAAAAAGGGAAAGGAAAGTAAAGGCAACCTG  796
       ||||| || ||||||||| ||||   |||| | |||| ||||| |||| 
seq2  TAAGGATAATAAGAGAAAACAAAA--TGAAAAGGAAGT-AAGGC-ACCT-  787

seq1  GGTGAGGAGCACAGAGAAATGGCCCTGTCTAACAGCAGTTGCTGTTCTTA  846
      ||||| |||||||   |||  | ||||||||||||||||   |||||| |
seq2  GGTGATGAGCACA---AAAAAGGCCTGTCTAACAGCAGTGCTTGTTCTAA  834

seq1  TAGATAACCTTGGTTTCA  864
      | || |||| ||||||||
seq2  T-GA-AACC-TGGTTTCA  849