BAC Information

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BAC

Clone NameB6Ng01-153J03
Chromosome7 (Build37)
Map Location 3,046,304 - 3,194,013
singlet/doubletdoublet
Overlap geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503
Upstream genenone
Downstream geneNlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153J03.bB6Ng01-153J03.g
ACCDH948845DH948846
length1,019696
definitionDH948845|Mus musculus domesticus DNA, BAC clone: B6Ng01-153J03, 5' end.DH948846|Mus musculus domesticus DNA, BAC clone: B6Ng01-153J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,192,988 - 3,194,013)(3,046,304 - 3,046,998)
sequence
gaattcttgaccccctggaaatgctgctgagcacgttttttgtgaagact
tgtctctaaagagcatagattttgctcttgcctctcttttgcctctttcc
ccaccttgctccccctctctccacgtggtcatggctgacctctcctctct
ctctctctctctctctctctctctctctctctccctttctctgcctctac
tactctactactcttttttaactcccctccccatgccctaaataaactct
attctatgctaaaaaaaagaaaagaagcatagatttttacaagcacttct
gggacagattctagaatccagagctccctgaatggattctagcttttgtt
ctcatgtttatttgaatatggggtctcactgtgccagttcatccggatga
ctttcatcccatgaccctccaccctcattgtagtacactgcatagtcagc
tactattccttactggcttgggtggtgtaagctggcaggtgcatttttcc
ttctcaaaataggacttcagaagcctcattattttcaggcagaattcccc
taatctgctgagcatcagttagcacggggcccttctgaggctgcatccta
tccgtctctccagccctagacctaaaccttttgttaacctttggtgttgt
ctgggaactcagaacccctgagatggtaatagcccacacacttaaaggaa
taaatgaagaattaaaatttgtatagcaccaattaccccactttgttgtg
ttcactaccaccctcctgttctccactgctagccaacaatgtaggaccct
cccatggctgcagagaaatgtcaggaagaaaatctcccctcctctactct
cctagacacaggatacatatatgaagacattatagagtgatgttgggttg
gagagatggcttagtggtgtaagagcaccaactgtcttccgaagtctggg
ttcaaatccagcaaccactgggtagttcatcacccgtgaggaatcttatg
ccctcttctgtgtggctga
gaattctttggcttgcacacactcttttgagcatctgctgactgttgtat
gtttgttgtttcctacaggatatgatgtttcagcttctccaaggtctgga
cttttttcattctcacagagtagtgccttgcaatctgaaaccgcagaaca
ttctggtaaccagcagtggacagataaagcttgccatatctatagttttc
agatggcccttacctcggtagtaagtgatatcattgtcctggcattaaat
gtagttttcctgttttaattgacaaactgccctcttcgtgatcctcctgc
tgtttctgctcacacttagtctgtgaacggaatgtctgtgtgcttttttc
actagctttggctaagaggaaagtaagggccttgcttactatgacctcag
atgcatctgactgggtttgttatggatgggaaccaatcacagaaatagcc
tgttggcaccttagccactagggaggagtcagttagacatttctaaatga
gttttgctataacctggctttttaagttgcatacataatgtggaagggca
ggaggagtgccacctgtgttctgtggtgtaacttgagaaacagccacacc
attggcccaggcaggccagataatacactcttcataaactgtgatgcttc
agggattagagaaaatgaactgaattgacctgagtgactaccactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3192988_3194013
seq2: B6Ng01-153J03.b_43_1061 (reverse)

seq1  TCAGCCGCACCAGAAGAGGGCATCAGATTCCTCACGGGTGGTGAGCTACC  50
      |||||| || ||||||||||||| |||||||||||||||| ||| |||||
seq2  TCAGCCACA-CAGAAGAGGGCATAAGATTCCTCACGGGTGATGAACTACC  49

seq1  ATGTGGTTGCTGGGATTTGAACCCAGGACCTTCGGAAGAACAGTTGGTGC  100
        ||||||||| ||||||||||||||   ||||||||| |||||||||||
seq2  CAGTGGTTGCT-GGATTTGAACCCAG--ACTTCGGAAG-ACAGTTGGTGC  95

seq1  TCTTAC-CCACTAAGCCATCTCTCC-AGCCAACATCACTCTTTAATGTCT  148
      |||||| |||||||||||||||||| | ||||||||||||| ||||||||
seq2  TCTTACACCACTAAGCCATCTCTCCAACCCAACATCACTCTATAATGTCT  145

seq1  TCATCTATGTATCCTTGTGTCTAAGGAGAGTAGAGGAGGGGAGATTTTCT  198
      |||| ||||||||| ||||||| |||||||||||||||||||||||||||
seq2  TCATATATGTATCC-TGTGTCT-AGGAGAGTAGAGGAGGGGAGATTTTCT  193

seq1  TCCTGACATTTCTCTGCAGCCATGGGAGGGTCCTACATTGTGGGCTAGCA  248
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCTGACATTTCTCTGCAGCCATGGGAGGGTCCTACATTGTTGGCTAGCA  243

seq1  GTGGAG-ACAGGAGGGTGGTAGTGAACACAACAAAGTGGGGTAATTGGTG  297
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAACAGGAGGGTGGTAGTGAACACAACAAAGTGGGGTAATTGGTG  293

seq1  CTATACAAATTTTAATTCTTCATTTATTCCTTTAAGTGTGTGGGCTATTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAAATTTTAATTCTTCATTTATTCCTTTAAGTGTGTGGGCTATTA  343

seq1  CCATCTCAGGGGTTCTGAGTTCCCAGACAACACC-AAGGTTAACAAAAGG  396
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCATCTCAGGGGTTCTGAGTTCCCAGACAACACCAAAGGTTAACAAAAGG  393

seq1  TTTAGGTCTAGGGCTGGAGAGACGGATAGGATGCAGCCTCAGAAGGGCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTCTAGGGCTGGAGAGACGGATAGGATGCAGCCTCAGAAGGGCCC  443

seq1  CGTGCTAACTGATGCTCAGCAGATTAGGGGAATTCTGCCTGAAAATAATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTAACTGATGCTCAGCAGATTAGGGGAATTCTGCCTGAAAATAATG  493

seq1  AGGCTTCTGAAGTCCTATTTTGAGAAGGAAAAATGCACCTGCCAGCTTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTGAAGTCCTATTTTGAGAAGGAAAAATGCACCTGCCAGCTTAC  543

seq1  ACCACCCAAGCCAGTAAGGAATAGTAGCTGACTATGCAGTGTACTACAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCAAGCCAGTAAGGAATAGTAGCTGACTATGCAGTGTACTACAAT  593

seq1  GAGGGTGGAGGGTCATGGGATGAAAGTCATCCGGATGAACTGGCACAGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGAGGGTCATGGGATGAAAGTCATCCGGATGAACTGGCACAGTG  643

seq1  AGACCCCATATTCAAATAAACATGAGAACAAAAGCTAGAATCCATTCAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCATATTCAAATAAACATGAGAACAAAAGCTAGAATCCATTCAGG  693

seq1  GAGCTCTGGATTCTAGAATCTGTCCCAGAAGTGCTTGTAAAAATCTATGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGGATTCTAGAATCTGTCCCAGAAGTGCTTGTAAAAATCTATGC  743

seq1  TTCTTTTCTTTTTTTTAGCATAGAATAGAGTTTATTTAGGGCATGGGGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTTTTTTTTAGCATAGAATAGAGTTTATTTAGGGCATGGGGAG  793

seq1  GGGAGTTAAAAAAGAGTAAGTAGAGTAGTAGAGGCAGAGCAAAGGGAGAG  846
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  GGGAGTTAAAAAAGAGT-AGTAGAGTAGTAGAGGCAGAG-AAAGGGAGAG  841

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAGAGGAGAGGTCAGCCAT  896
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAG--AGAGAGGAGAGGTCAGCCAT  889

seq1  GACCACGTGGAGAGAGGGGGAGCAAGGTGGGGAAAGAGGCAAAAGAGAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACGTGGAGAGAGGGGGAGCAAGGTGGGGAAAGAGGCAAAAGAGAGG  939

seq1  CAAGAGCAAAATCTATGCTCTTTAGAGACAAGTCTTCACAAAAAACGTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAAAATCTATGCTCTTTAGAGACAAGTCTTCACAAAAAACGTGC  989

seq1  TCAGCAGCATTTCCAGGGGGTCAAGAATTC  1026
      ||||||||||||||||||||||||||||||
seq2  TCAGCAGCATTTCCAGGGGGTCAAGAATTC  1019

seq1: chr7_3046304_3046998
seq2: B6Ng01-153J03.g_72_767

seq1  GAATTCTTTGGCTTGCACACACTCTTTTGAGCATCTGCTGACTGTTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGCTTGCACACACTCTTTTGAGCATCTGCTGACTGTTGTAT  50

seq1  GTTTGTTGTTTCCTACAGGATATGATGTTTCAGCTTCTCCAAGGTCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGTTTCCTACAGGATATGATGTTTCAGCTTCTCCAAGGTCTGGA  100

seq1  CTTTTTTCATTCTCACAGAGTAGTGCCTTGCAATCTGAAACCGCAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCATTCTCACAGAGTAGTGCCTTGCAATCTGAAACCGCAGAACA  150

seq1  TTCTGGTAACCAGCAGTGGACAGATAAAGCTTGCCATATCTATAGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTAACCAGCAGTGGACAGATAAAGCTTGCCATATCTATAGTTTTC  200

seq1  AGATGGCCCTTACCTCGGTAGTAAGTGATATCATTGTCCTGGCATTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCCTTACCTCGGTAGTAAGTGATATCATTGTCCTGGCATTAAAT  250

seq1  GTAGTTTTCCTGTTTTAATTGACAAACTGCCCTCTTCGTGATCCTCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTCCTGTTTTAATTGACAAACTGCCCTCTTCGTGATCCTCCTGC  300

seq1  TGTTTCTGCTCACACTTAGTCTGTGAACGGAATGTCTGTGTGCTTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGCTCACACTTAGTCTGTGAACGGAATGTCTGTGTGCTTTTTTC  350

seq1  ACTAGCTTTGGCTAAGAGGAAAGTAAGGGCCTTGCTTACTATGACCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTTTGGCTAAGAGGAAAGTAAGGGCCTTGCTTACTATGACCTCAG  400

seq1  ATGCATCTGACTGGGTTTGTTATGGATGGGAACCAATCACAGAAATAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTGACTGGGTTTGTTATGGATGGGAACCAATCACAGAAATAGCC  450

seq1  TGTTGGCACCTTAGCCACTAGGGAGGAGTCAGTTAGACATTTCTAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCACCTTAGCCACTAGGGAGGAGTCAGTTAGACATTTCTAAATGA  500

seq1  GTTTTGCTATAACCTGGCTTTTTAAGTTGCATACATAATGTGGAAGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTATAACCTGGCTTTTTAAGTTGCATACATAATGTGGAAGGGCA  550

seq1  GGAGGAGTGCCACCTGTGTTCTGTGGTGTAACTTGAGAAACAGCCACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTGCCACCTGTGTTCTGTGGTGTAACTTGAGAAACAGCCACACC  600

seq1  ATTGGCCCAGGCAGGCCAGATAACACACTCTTCAGAAACTGTGATGCTTC  650
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  ATTGGCCCAGGCAGGCCAGATAATACACTCTTCATAAACTGTGATGCTTC  650

seq1  AGGGACTAGAG-AAATGAACTGAAATGACCTGAGTGACTACCACTT  695
      ||||| ||||| |||||||||||| |||||||||||||||||||||
seq2  AGGGATTAGAGAAAATGAACTGAATTGACCTGAGTGACTACCACTT  696