BAC Information

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BAC

Clone NameB6Ng01-153M03
Chromosome7 (Build37)
Map Location 17,397,427 - 17,535,810
singlet/doubletdoublet
Overlap geneFkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128
Upstream geneEG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5
Downstream gene0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153M03.bB6Ng01-153M03.g
ACCDH948979DH948980
length1,012943
definitionDH948979|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M03, 5' end.DH948980|Mus musculus domesticus DNA, BAC clone: B6Ng01-153M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,397,427 - 17,398,438)(17,534,868 - 17,535,810)
sequence
gaattcctaggttggttcatgcccctgctctaaacagaccacttgtaagc
atcacgtcatggggtcacttttcccactcagttacacagtgagttcttaa
attaatgtgtgagggcctgtttaaaactaaaaccaaaaattgaacccatc
acccctgcaaatgaaaaaaacaatgctggtcgctgccagagggtggaggg
agagctgtgaactggttgaacctggggccctacccaggacaaatgctcta
ccaccaagccccactcccagcccctcactggtggatccaggaaggtggtt
taagcacaaccccagcacccagttttagttttgtaaggtgaaacacttct
gacaccttacttgcctaacaatgtgagggtgtttagagggctgtagtttc
acacattatcccaggctacgcagcagaggccagtcttggactgttggtct
ttctgcagctacctcccgatgtggggtttccaggtgtggacaccacactg
ttgtagatgtacttagtactactgaactgtgagtgtgccagtgatgcatt
tgatttttggaatattagatcacaaattttaaaaaagatttatttattac
gtacacagcctgcatgtatgcctgcagaccagaagagggcaccagatctc
attataaatgagatataggccaccatggggacttgaactcaggacctctg
gaaagagccagtgctctaaacctctgagccatctcttcagcccaggatca
cagtgtttaaaagccatagtacatttctgtaattcagcccttggaaagag
gaggcatgaaggatgggaaaagcaagcatgtctcataattctaaacccaa
actccaccccacccaaaccaaacccaatccacaaaaatccaaagtaggaa
aggaggaaagaagcaaccgtggcttcccgttaccccagcactctgaggca
gaagcatgtggatctccatgagtttaaacaagtcgggttaggggggagtt
cccagctagcca
gaattctttacctgtggccccttccaggatcactactgcaagaggtccag
aaggaatccgcattgcgcagccggtgctgtggttgccttttccgccgcct
gagggcagccttgctccacccacctccgccatttagggctcactcaggtt
gccctgctcctccagcaaggaagagctgagggtctgaaaccttcctcctt
gcctcgcccccctacacacccccccggccttagtgcctccactcctcagc
tccttgctctccttttttcgaccctcaactccctccgtccagagaccata
tggttcctcgtcaatgcatctgggatctggttcatccgttgcgaccgttt
aacaaacagccaatcggcacgacgctgctagcagcgcacacatacgggcg
atacgcactgggggaacaggatatacccactcccactgcttggatctgac
tctgagagactctgctttccctccaccccattcatccccctttctggggc
caggtatgaccccaaaagcccagctccaaagttctttggcaaggccgctg
agtttgaatggggcactggggttggagaaggcagccgctcaatcctgaag
gctgcaacagaaacagccacagggacgacacagcctctggatggtcttca
gtaaaatcacctctgagtttgggggactccagactccaggctatcggctt
ctcagtggtacctcccccagcccagtaagagagccatatttcatcttttg
atcaatgtacccatcctcttgctgatctctaaaagagcccattgtgtgtg
gttgacacacaaatgtgccaaggggcagtcagagtcctgactatgggagc
gtcatcaggggacccttcctttgagaatgtgacatctgagaattctgagg
aaagacagtccatgcagcaggagcagtcatgcaaaggctcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17397427_17398438
seq2: B6Ng01-153M03.b_47_1058

seq1  GAATTCCTAGGTTGGTTCATGCCCCTGCCCTAAACAGACCACTTGTAAGC  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCCTAGGTTGGTTCATGCCCCTGCTCTAAACAGACCACTTGTAAGC  50

seq1  ATCACGTCATGGGGTCACTTTTCCCACTCAGTTACACAGTGAGTTCTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGTCATGGGGTCACTTTTCCCACTCAGTTACACAGTGAGTTCTTAA  100

seq1  ATTAATGTGTGAGGGCCTGTTTAAAACTAAAACCAAAAATTGAACCCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTGTGAGGGCCTGTTTAAAACTAAAACCAAAAATTGAACCCATC  150

seq1  ACCCCTGCAAATGAAAAAAACAATGCTGGTCGCTGCCAGAGGGTGGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCAAATGAAAAAAACAATGCTGGTCGCTGCCAGAGGGTGGAGGG  200

seq1  AGAGCTGTGAACTGGTTGAACCTGGGGCCCTACCCAGGACAAATGCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTGAACTGGTTGAACCTGGGGCCCTACCCAGGACAAATGCTCTA  250

seq1  CCACCAAGCCCCACTCCCAGCCCCTCACTGGTGGATCCAGGAAGGTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGCCCCACTCCCAGCCCCTCACTGGTGGATCCAGGAAGGTGGTT  300

seq1  TAAGCACAACCCCAGCACCCAGTTTTAGTTTTGTAAGGTGAAACACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACAACCCCAGCACCCAGTTTTAGTTTTGTAAGGTGAAACACTTCT  350

seq1  GACACCTTACTTGCCTAACAATGTGAGGGTGTTTAGAGGGCTGTAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTACTTGCCTAACAATGTGAGGGTGTTTAGAGGGCTGTAGTTTC  400

seq1  ACACATTATCCCAGGCTACGCAGCAGAGGCCAGTCTTGGACTGTTGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTATCCCAGGCTACGCAGCAGAGGCCAGTCTTGGACTGTTGGTCT  450

seq1  TTCTGCAGCTACCTCCCGATGTGGGGTTTCCAGGTGTGGACACCACACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGCTACCTCCCGATGTGGGGTTTCCAGGTGTGGACACCACACTG  500

seq1  TTGTAGATGTACTTAGTACTACTGAACTGTGAGTGTGCCAGTGATGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATGTACTTAGTACTACTGAACTGTGAGTGTGCCAGTGATGCATT  550

seq1  TGATTTTAGGAATATTAGATCACAAATTTTAAAAAAGATTTATTTATTAC  600
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTGGAATATTAGATCACAAATTTTAAAAAAGATTTATTTATTAC  600

seq1  GTACACAGCCTGCATGTATGCCTGCAGACCAGAAGAGGGCACCAGATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGCCTGCATGTATGCCTGCAGACCAGAAGAGGGCACCAGATCTC  650

seq1  ATTATAAATGAGATATAGGCCACCAT-GGGACTTGAACTCAGGACCTCTG  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTATAAATGAGATATAGGCCACCATGGGGACTTGAACTCAGGACCTCTG  700

seq1  G-AAGAGCCAGTGCTCTAAACCTCTGAGCCATCTCTTCAGCCCAGGATCA  748
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCCAGTGCTCTAAACCTCTGAGCCATCTCTTCAGCCCAGGATCA  750

seq1  CAGTGTTTAAAAGCCATAGTACA-TTCTGTAATTCAGCCCTTGGAAAGAG  797
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGTGTTTAAAAGCCATAGTACATTTCTGTAATTCAGCCCTTGGAAAGAG  800

seq1  GAGGCA-GGAGGATGGGAAAGGCAAGCATGTCTCAAAAATCTAAA-CCAA  845
      |||||| | ||||||||||| |||||||||||||| || |||||| ||||
seq2  GAGGCATGAAGGATGGGAAAAGCAAGCATGTCTCATAATTCTAAACCCAA  850

seq1  ACT-CAACCCAACCAAACCAAA-CCAAACCACAAAAATCCAAAAGTAGGA  893
      ||| || |||| |||||||||| |||| |||||||||||| |||||||| 
seq2  ACTCCACCCCACCCAAACCAAACCCAATCCACAAAAATCC-AAAGTAGG-  898

seq1  AAAGGAGGAAAGAAGCAACAGTGGCTTCCCGTTAACCCCAGCACTCAGGA  943
      ||||||||||||||||||| ||||||||||||| ||||||||||||  ||
seq2  AAAGGAGGAAAGAAGCAACCGTGGCTTCCCGTT-ACCCCAGCACTC-TGA  946

seq1  GGCAGAGGCAGGTGGATCTCCATGAGTTTGAAGCAAGTCTGGTTTATGGG  993
      |||||| ||| |||||||||||||||||| || |||||| ||||   |||
seq2  GGCAGAAGCATGTGGATCTCCATGAGTTT-AAACAAGTCGGGTT--AGGG  993

seq1  GTGAGTTCCAGGCTAGCCA  1012
      | |||||||  ||||||||
seq2  GGGAGTTCCCAGCTAGCCA  1012

seq1: chr7_17534868_17535810
seq2: B6Ng01-153M03.g_70_1012 (reverse)

seq1  CCAGAGCCTTTGCATGACTGCTCCTGCTGCCTGGACTGTCTTTCCTCAGA  50
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAAGAGCCTTTGCATGACTGCTCCTGCTGCATGGACTGTCTTTCCTCAGA  50

seq1  ATTCTTCAGATGTCACATTCTC-AAGGAAGGGTCCCCTGATGACGCTTCC  99
      |||| ||||||||||||||||| ||||||||||||||||||||||| |||
seq2  ATTC-TCAGATGTCACATTCTCAAAGGAAGGGTCCCCTGATGACGC-TCC  98

seq1  CATAGTCAGGACTCTGACTGCCCCTTGGCACATTTGTGTGTCAACCACAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCAGGACTCTGACTGCCCCTTGGCACATTTGTGTGTCAACCACAC  148

seq1  ACAATGGGCTCTTTTAGAGATCAGCAAGAGGATGGGTACATTGATC-AAA  198
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAATGGGCTCTTTTAGAGATCAGCAAGAGGATGGGTACATTGATCAAAA  198

seq1  GATGAAATATGGCTCTCTTACTGGGCTGGGGGAGGTACCTCTGAGAAGCC  248
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATGAAATATGGCTCTCTTACTGGGCTGGGGGAGGTACCACTGAGAAGCC  248

seq1  GATAGCCTGGAGTCTGGAGTCCCCCAAACTCAGAGGTGATTTTACTGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCTGGAGTCTGGAGTCCCCCAAACTCAGAGGTGATTTTACTGAAG  298

seq1  ACCATCCAGAGGCTGTGTCGTCCCTGTGGCTGTTTCTGTTGCAGCCTTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCAGAGGCTGTGTCGTCCCTGTGGCTGTTTCTGTTGCAGCCTTCA  348

seq1  GGATTGAGCGGCTGCCTTCTCCAACCCCAGTGCCCCATTCAAACTCAGCG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAGCGGCTGCCTTCTCCAACCCCAGTGCCCCATTCAAACTCAGCG  398

seq1  GCCTTGCCAAAGAACTTTGGAGCTGGGCTTTTGGGGTCATACCTGGCCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCCAAAGAACTTTGGAGCTGGGCTTTTGGGGTCATACCTGGCCCC  448

seq1  AGAAAGGGGGATGAATGGGGTGGAGGGAAAGCAGAGTCTCTCAGAGTCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGGGATGAATGGGGTGGAGGGAAAGCAGAGTCTCTCAGAGTCAG  498

seq1  ATCCAAGCAGTGGGAGTGGGTATATCCTGTTCCCCCAGTGCGTATCGCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCAGTGGGAGTGGGTATATCCTGTTCCCCCAGTGCGTATCGCCC  548

seq1  GTATGTGTGCGCTGCTAGCAGCGTCGTGCCGATTGGCTGTTTGTTAAACG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGCGCTGCTAGCAGCGTCGTGCCGATTGGCTGTTTGTTAAACG  598

seq1  GTCGCAACGGATGAACCAGATCCCAGATGCATTGACGAGGAACCATATGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAACGGATGAACCAGATCCCAGATGCATTGACGAGGAACCATATGG  648

seq1  TCTCTGGACGGAGGGAGTTGAGGGTCGAAAAAAGGAGAGCAAGGAGCTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGACGGAGGGAGTTGAGGGTCGAAAAAAGGAGAGCAAGGAGCTGA  698

seq1  GGAGTGGAGGCACTAAGGCCGGGGGGGTGTGTAGGGGGGCGAGGCAAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGAGGCACTAAGGCCGGGGGGGTGTGTAGGGGGGCGAGGCAAGGA  748

seq1  GGAAGGTTTCAGACCCTCAGCTCTTCCTTGCTGGAGGAGCAGGGCAACCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTTCAGACCCTCAGCTCTTCCTTGCTGGAGGAGCAGGGCAACCT  798

seq1  GAGTGAGCCCTAAATGGCGGAGGTGGGTGGAGCAAGGCTGCCCTCAGGCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGCCCTAAATGGCGGAGGTGGGTGGAGCAAGGCTGCCCTCAGGCG  848

seq1  GCGGAAAAGGCAACCACAGCACCGGCTGCGCAATGCGGATTCCTTCTGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAAAGGCAACCACAGCACCGGCTGCGCAATGCGGATTCCTTCTGGA  898

seq1  CCTCTTGCAGTAGTGATCCTGGAAGGGGCCACAGGTAAAGAATTC  943
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCAGTAGTGATCCTGGAAGGGGCCACAGGTAAAGAATTC  943