BAC Information

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BAC

Clone NameB6Ng01-154B06
Chromosome7 (Build37)
Map Location 52,012,031 - 52,012,788
singlet/doubletsinglet
Overlap geneVrk3
Upstream geneKlk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473
Downstream geneEG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154B06.bB6Ng01-154B06.g
ACCDH949219DH949220
length1,0681,026
definitionDH949219|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B06, 5' end.DH949220|Mus musculus domesticus DNA, BAC clone: B6Ng01-154B06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgaagtagatgtaggcaaaaatttttgcaacctacttgtaata
aggattcaccctctcctgtagcccaccatgctgcagaggcagtggaagag
aagagtttaggatgtgagggaagtggccttgttcagcaactgttccttgg
gggcgagctcgatctccttgggcagcagttcagtcctgtagcaaacacca
aatatgactcagcagctgcagaccagtcctctaggcaggcagacaccagg
cagctgtagttcaatcctgaagaaactgccaggcttgcctgctggcctga
ggtgagccctctgaagcagcagctgccacaggatcctcgtgagcagctct
tgggcaagtttctctcagtggtggtattatcacaagttgagctaaacaat
gagaaccaatacatgcatgtctttagggaagaatagtgaggcagaacaga
ccaaaccaatgctctgtgctcttcccactgtctgtggggacatacataca
ctccttcatcacaggctctttcacatgtctgtagcagaacatcctttcac
ctgggtctgcttcaggaaaacagcctttcacatgtttgctttagcaagac
atcctttcatctgtgtgccccagcaaaccagcatttgacataactgactt
tccaaagaagtagaagtttccacttcaagtagaagatagagctagagaat
ttattgaaaagcatgacacagtagcacatatgtgtaaccccagcccttag
gaggcctaggaaggacaactgtaaccttcttgagtttaagacttatcata
taagaaggccttagctctctttttggttttttgtttgtttgtttttttgg
gacaggatttatctgtgtagccctggctgtcctggaactcactctgtaga
ccaggctggcctcaaactcaagatcttcctgcctctacctcccaagtgct
gggattaaaggtggtgcccccactgccctgctgaaatctttctcttaacc
aaaccaatttgttgagccagcaaatagatcgaggatgaagcccttgctgc
acaaactgtagagaactg
gaattctgagtggatgaggaagcactggggaggtgaggagcaccagaaaa
agggagaacagaaaggctcagtcccggtgactgagcaagagattgggagt
tctccaaggaagaaagagaaaaagaacctgggctgaagagcagtaggatc
agagagaatgctggaggacaagctgatgaaacagcccgtttagagagaaa
gggttaatctcaaatcaaccgcaccaccagagttagagaaggggcagtca
ggggttaaggaatgaccatcagctttcccagtagcacatgcctgtgaatg
ctgtggagcaaagttataatgtcttatagaaataatagatctaaggtggt
ttaaagagtccatgattttatatgggatgcactctccttatgtgaaacaa
attctaaataactgagctactcaaaatagaattattcccaaaagctggaa
gggattggtaatggctgtcctagagactggtctgcagttgcaatggttaa
tatggtggagggaagaaactgtgactattagacagtgaaatagagtgagg
gaaatgaatgtggtaaaagaccagttgtacagattcaatttgatgatgtt
actatagaataatgtcacttagtggctttatgaaaaagcttaggaaaaag
ttgatgattcagggaaaagtctaccttgtttacaaagattatacctggct
ctggagaagtcttcactgtttttgttgttgttgttgggtttttttttttt
gttttgtttttttacaaagattagtctcagctatgaacaaagatgtatca
gaccctgatacaagatgggtttttacagagactttggcatatgaaaatgc
aaataccgaatgtaaaaatgtattagtctaattaaaggcttgggcagcac
aatgtatgaatggataaaggatatgactgatatgggtttaatatgtgcca
tgtgaatatcatagttggagctatagtagagtctcagatctcaaaattcc
tggtgttcaattgcaggaaatacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52012031_52012788
seq2: B6Ng01-154B06.b_362_1110

seq1  CAGCTGCCACAGGATCCTCGTGAGCAGCTCTTGGGCAAGTTTCTCTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCACAGGATCCTCGTGAGCAGCTCTTGGGCAAGTTTCTCTCAGT  50

seq1  GGTGGTATTATCACAAGTTGAGCTAAACAATGAGAACCAATACATGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTATTATCACAAGTTGAGCTAAACAATGAGAACCAATACATGCATG  100

seq1  TCTTTAGGGAAGAATAGTGAGGCAGAACAGACCAAACCAATGCTCTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGGAAGAATAGTGAGGCAGAACAGACCAAACCAATGCTCTGTGC  150

seq1  TCTTCCCACTGTCTGTGGGGACATACATACACTCCTTCATCACAGGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCACTGTCTGTGGGGACATACATACACTCCTTCATCACAGGCTCT  200

seq1  TTCACATGTCTGTAGCAGAACATCCTTTCACCTGGGTCTGCTTCAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGTCTGTAGCAGAACATCCTTTCACCTGGGTCTGCTTCAGGAAA  250

seq1  ACAGCCTTTCACATGTTTGCTTTAGCAAGACATCCTTTCATCTGTGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTTCACATGTTTGCTTTAGCAAGACATCCTTTCATCTGTGTGCC  300

seq1  CCAGCAAACCAGCATTTGACATAACTGACTTTCCAAAGAAGTAGAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAACCAGCATTTGACATAACTGACTTTCCAAAGAAGTAGAAGTTT  350

seq1  CCACTTCAAGTAGAAGATAGAGCTAGAGAATTTATTGAAAAGCATGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCAAGTAGAAGATAGAGCTAGAGAATTTATTGAAAAGCATGACAC  400

seq1  AGTAGCACATATGTGTAACCCCAGCCCTTAGGAGGCCTAGGAAGGACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCACATATGTGTAACCCCAGCCCTTAGGAGGCCTAGGAAGGACAAC  450

seq1  TGTAACCTTCTTGAGTTTAAGACTTATCATATAAGAAGGCCTTAGCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCTTCTTGAGTTTAAGACTTATCATATAAGAAGGCCTTAGCTCTC  500

seq1  TTTTTGGTTTTTTGTTTGTTTGTTTTTTTGGGACAGGATTTATCTGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTTTTGTTTGTTTGTTTTTTTGGGACAGGATTTATCTGTGTA  550

seq1  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTC  600

seq1  AGAGATCTTCCTGCCTCTACCTCCCAAGTGCTGGGATTAAAGGTGTGTGC  650
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  A-AGATCTTCCTGCCTCTACCTCCCAAGTGCTGGGATTAAAGGTG-GTGC  648

seq1  CCCCACTGCCCTGCTGAAAATCTTTCTCTTAAACAAAACCAAATTGCTGA  700
      |||||||||||||||| ||||||||||||| ||| ||||||| ||| |||
seq2  CCCCACTGCCCTGCTG-AAATCTTTCTCTT-AACCAAACCAATTTGTTGA  696

seq1  GCCAGCAGAATAGATCTGAGGATGAAAGCACTTGCTGCAGAAACCTGTAG  750
      ||||||| |||||||| ||||||| |||| ||||||||| ||| ||||||
seq2  GCCAGCA-AATAGATC-GAGGATG-AAGCCCTTGCTGCACAAA-CTGTAG  742

seq1  AAGAACTG  758
       |||||||
seq2  -AGAACTG  749