BAC Information

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BAC

Clone NameB6Ng01-154N16
Chromosome7 (Build37)
Map Location 148,081,590 - 148,081,906
singlet/doubletsinglet
Overlap genePsmd13
Upstream geneKndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, LOC100043546
Downstream geneCox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154N16.bB6Ng01-154N16.g
ACCDH949786DH949787
length971615
definitionDH949786|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N16, 5' end.DH949787|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatcttaaaaggcacttataataaaataatactaaaagagagca
cgtggatccatacaccagactaacgcgaggatagggtatgagtatatggg
ttatgagaacgccaaagttccaggaggtgagtttctgtgaaactctttgc
ctcgtgagtgctcccaagcctctcagcctgccaagcaaacttcactggag
tgtgcgtagcagttggctaattggatttctgcttgattgttttttgatga
cctgttcattgataagagtggggtatttcataaattcattgtttttaata
gctgcatagtgctccattgtgtaaatgtaccacattttctgtatccatta
ctctattggggaacatgtgggttctttccagcttctggctattataaata
aggctgctataaacatagtggagcatgtgtccttattacatattggagca
tcttctgggtgtacgcccaggagagctattgctggatcctctggtaatac
tatgtccaattttctgaggaaccaccagattgatttccagagtggttgta
caagcttgcaatcccatcggcaatggagaagtgttcctctttctccacat
cctcgccagcatctgctgtcacctgagttttttatcttagccattctgac
tggtgtgaggtggaatctcagggttgttttgatttgcatttccctgatga
gtagggatgttgaacatttttttaggtgtttctcaaccattaggtattcc
tcagttgagaattcttttgtttagctctgtaccccatttttaataggatt
tcatcccataaacaaccacccaaaaccagacactatttatggatgccaaa
caagagctttgctgacaggagtcttgatatagctgtctccttggtcctgt
gaaggttctatgccccagtataggggactgcataggctaggagaaggaat
ggggtgggttggtgaatacgg
gaattcctaatgattgtctgttatactcatagattgccgtctagcccaac
agtcaatgcacccagcaactgatggaaacagatgcagagacccacagcca
aatattaggtagaacctgggcaaatcccaaggaaaagggtggggaaaacc
cacaaatcacgcaacccgagcccacaggggctcacagagactgacctgct
gaccaggaagcctgagaggggctggcctaggccctatgcatatgttccag
ttgtgtagcttggtcttcctgtagggttgctaacagagggagcaggagct
gtctccgactctgctgcctgcctctgggctctttccccttctgtgttacc
tcatcaggccttaaagaaggggagtactagccttatacaatctgatctgc
aatggctaactgagagccactgaggccggcccttttctgaagagggagga
ggagtggatgaggtgcgggctgggagacggaaagtaagggggagacctgg
gagggggaactgaagtttggatagaaaataaacaaaattaaaaaaaaaaa
aatttttttttttggtcagaagttgtggttgttctgtgggagcttggctg
cctctaatcccagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148081590_148081906
seq2: B6Ng01-154N16.g_367_684 (reverse)

seq1  TACTGGGATTAGAGGCAGCCAAGCTCCCACAGAACAACCACAACTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGATTAGAGGCAGCCAAGCTCCCACAGAACAACCACAACTTCTGA  50

seq1  CC-AAAAAAAAAATTTTTTTTTTTTTAATTTTGTTTATTTTCTATCCAAA  99
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAAAATTTTTTTTTTTTTAATTTTGTTTATTTTCTATCCAAA  100

seq1  CTTCAGTTCCCCCTCCCAGGTCTCCCCCTTACTTTCCGTCTCCCAGCCCG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTCCCCCTCCCAGGTCTCCCCCTTACTTTCCGTCTCCCAGCCCG  150

seq1  CACCTCATCCACTCCTCCTCCCTCTTCAGAAAAGGGCCGGCCTCAGTGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATCCACTCCTCCTCCCTCTTCAGAAAAGGGCCGGCCTCAGTGGC  200

seq1  TCTCAGTTAGCCATTGCAGATCAGATTGTATAAGGCTAGTACTCCCCTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTAGCCATTGCAGATCAGATTGTATAAGGCTAGTACTCCCCTTC  250

seq1  TTTAAGGCCTGATGAGGTAACACAGAAGGGGAAAGAGCCCAGAGGCAGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGCCTGATGAGGTAACACAGAAGGGGAAAGAGCCCAGAGGCAGGC  300

seq1  AGCAGAGTCGGAGACAGC  317
      ||||||||||||||||||
seq2  AGCAGAGTCGGAGACAGC  318