BAC Information

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BAC

Clone NameB6Ng01-154P06
Chromosome7 (Build37)1 (Build37)
Map Location 27,942,938 - 27,944,02536,545,563 - 36,545,961
singlet/doubletsingletsinglet
Overlap geneGm1450, Egln2
Upstream geneCyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2
Downstream geneRab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154P06.bB6Ng01-154P06.g
ACCDH949862DH949863
length1,080459
definitionDH949862|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P06, 5' end.DH949863|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,942,938 - 27,944,025)(36,545,563 - 36,545,961)
sequence
gaattctgcactggggagaaggggacaattcagagactaggttcggtgag
ggctaacacaaccagtacctggggctccctcccaggctctgccaaccacc
ttaggggctggggtgtagctatgtgagatcacttgcccagcaccgcaggg
ccctgtgttaggtgccaacaacagaaagagtctgggtgaggggctcacac
tcaagtctgtgggtcacactgttttacccacagggcacattcgtgattcc
cctacttgtgtctgcacaccgggatcccacccaattcaaggaccctgacc
atttcaatcccaccaatttcctggatgaccatggcgagttccagaacaac
gatgccttcatgccctttgccttaggtctggggtaggagggaggggacct
gagtggctagcactgggggactggcaggggcttgctcatcccacacctgc
acccacacccacaggaaagcggatgtgcctgggtgctggcctagcccgtt
ccgagatcttcctcttcctgacggctatcctgcagaagttctccctgctc
cctgtgggaagtcctgccaacatcaaccttaacccacagtgtactggtct
gggtaatgtgcccccagccttccagctccgcttggtggcccgctgagctt
gggcttcactggtgatctcagtggccctgatatccttacctgccctaact
gtatgtgtaaatctctttacagagaggaatacaagtgtgtgcagctctga
ggtaaacttttatttcttggctggcagaacctccatacccatgctcgtca
tggcaccctactctgcccagacagtggcagcccagtccatacactgccac
agccaaaggggctggggagtcacttcacattccaggccggaggagtgggg
acgagggtgagatgacacccacaccccaacacacctttccagcaagaggc
catgactcacctcaccccaaatcctgcctcttctcagtttaacattcaac
ggacagaccagccacaatcatgaccgcagccacactggccactgcccagg
tcaaacccagcccgtcgctcacggggcacc
gaattcccaagagaaagttagggattctaacaagaagagaagtagacaat
agggtctgagctgttgagaaatagtgaggctggggatggagagtcggttc
agcagttaagagtactggcttctctttcagaggaactggatttaattccc
aggattcacatggtggctcataatcacctataatccagttcccgggaccc
agtgctctctcctggtctccactggaatcttgtgcatggcccacatacaa
acatgtaaacacacacttaagtacctctcttaaaaatttacattgcgccg
ggcgtggtggcgcacacctttaatcccagcacttgggaggcagaggcagg
tggatttctgagttcgaggccagcctggtctgcagagtgagttctaggac
agccagggctacacagagaaaccctgtctcgaaaaacaaaaaaaaaaaca
aaaacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_27942938_27944025
seq2: B6Ng01-154P06.b_47_1126

seq1  GAATTCTGCACTGGGGAGAAGGGGACAATTCAGAGACTAGGTTCGGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTGGGGAGAAGGGGACAATTCAGAGACTAGGTTCGGTGAG  50

seq1  GGCTAACACAACCAGTACCTGGGGCTCCCTCCCAGGCTCTGCCAACCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACACAACCAGTACCTGGGGCTCCCTCCCAGGCTCTGCCAACCACC  100

seq1  TTAGGGGCTGGGGTGTAGCTATGTGAGATCACTTGCCCAGCACCGCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCTGGGGTGTAGCTATGTGAGATCACTTGCCCAGCACCGCAGGG  150

seq1  CCCTGTGTTAGGTGCCAACAACAGAAAGAGTCTGGGTGAGGGGCTCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTTAGGTGCCAACAACAGAAAGAGTCTGGGTGAGGGGCTCACAC  200

seq1  TCAAGTCTGTGGGTCACACTGTTTTACCCACAGGGCACATTCGTGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTGTGGGTCACACTGTTTTACCCACAGGGCACATTCGTGATTCC  250

seq1  CCTACTTGTGTCTGCACACCGGGATCCCACCCAATTCAAGGACCCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTGTGTCTGCACACCGGGATCCCACCCAATTCAAGGACCCTGACC  300

seq1  ATTTCAATCCCACCAATTTCCTGGATGACCATGGCGAGTTCCAGAACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATCCCACCAATTTCCTGGATGACCATGGCGAGTTCCAGAACAAC  350

seq1  GATGCCTTCATGCCCTTTGCCTTAGGTCTGGGGTAGGAGGGAGGGGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTTCATGCCCTTTGCCTTAGGTCTGGGGTAGGAGGGAGGGGACCT  400

seq1  GAGTGGCTAGCACTGGGGGACTGGCAGGGGCTTGCTCATCCCACACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCTAGCACTGGGGGACTGGCAGGGGCTTGCTCATCCCACACCTGC  450

seq1  ACCCACACCCACAGGAAAGCGGATGTGCCTGGGTGCTGGCCTAGCCCGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACCCACAGGAAAGCGGATGTGCCTGGGTGCTGGCCTAGCCCGTT  500

seq1  CCGAGATCTTCCTCTTCCTGACGGCTATCCTGCAGAAGTTCTCCCTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATCTTCCTCTTCCTGACGGCTATCCTGCAGAAGTTCTCCCTGCTC  550

seq1  CCTGTGGGAAGTCCTGCCAACATCAACCTTAACCCACAGTGTACTGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGAAGTCCTGCCAACATCAACCTTAACCCACAGTGTACTGGTCT  600

seq1  GGGTAATGTGCCCCCAGCCTTCCAGCTCCGCTTGGTGGCCCGCTGAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATGTGCCCCCAGCCTTCCAGCTCCGCTTGGTGGCCCGCTGAGCTT  650

seq1  GGGCTTCACTGGTGATCTCAGTGGCCCTGATATCCTTACCTGCCCTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCACTGGTGATCTCAGTGGCCCTGATATCCTTACCTGCCCTAACT  700

seq1  GTATGTGTAAATCTCTTTACAGAGAGGAATACAAGTGTGTGCAGCTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTAAATCTCTTTACAGAGAGGAATACAAGTGTGTGCAGCTCTGA  750

seq1  GGTAAACTTTTATTTCTTGGCTGGCAGAACCTCCATACCCATGCTCGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACTTTTATTTCTTGGCTGGCAGAACCTCCATACCCATGCTCGTCA  800

seq1  TGGCACCCTACTCTGCCCAGACAGTGGCAGCCCAGTCCATACACTGCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCCTACTCTGCCCAGACAGTGGCAGCCCAGTCCATACACTGCCAC  850

seq1  AGCCAAAGGGGCTGGGGAGTCACTTCACATTCCAGGCCGGAGGAGTGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAGGGGCTGGGGAGTCACTTCACATTCCAGGCCGGAGGAGTGGGG  900

seq1  ACGAGGGTGAGATGACACCCACACCCCAACACACCTTTCCAGCAAGAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGTGAGATGACACCCACACCCCAACACACCTTTCCAGCAAGAGGC  950

seq1  CATGACTCACCTCAACCCCAAATCCTGCCTCTTCTCAGCTCTACACTCAA  1000
      ||||||||||||| |||||||||||||||||||||||| |  ||| ||||
seq2  CATGACTCACCTC-ACCCCAAATCCTGCCTCTTCTCAGTTTAACATTCAA  999

seq1  CGGACCAGACACAGCCACCAGTCATGACCGCCAGCCACACTGGCCACTGC  1050
      |||| ||||| |||||| || ||||||||| |||||||||||||||||||
seq2  CGGA-CAGAC-CAGCCA-CAATCATGACCG-CAGCCACACTGGCCACTGC  1045

seq1  CCAGGTCAAAACCCAGCACCGCTCGCTCACGGGGCAGC  1088
      ||||||| ||||||||| ||| |||||||||||||| |
seq2  CCAGGTC-AAACCCAGC-CCG-TCGCTCACGGGGCACC  1080

seq1: chr1_36545563_36545961
seq2: B6Ng01-154P06.g_149_528

seq1  CTGGGGCTGGAGAGACGGCTCAGCAGTTAAGAGTCCT---TGCTCTTGCA  47
      |||||| ||||||| ||| ||||||||||||||| ||   | ||||| ||
seq2  CTGGGGATGGAGAGTCGGTTCAGCAGTTAAGAGTACTGGCTTCTCTTTCA  50

seq1  TAGGACCTGGGTTTGGATCGGAGCACCTACAGGATGGTCCACAACTGCCT  97
       |||| |||| |||   ||  || |   ||| | |||  || ||   |||
seq2  GAGGAACTGGATTTAATTCCCAGGATTCACATGGTGGCTCATAATCACCT  100

seq1  GTAATTCCAGCTCACTGGATCTGACGCCCTCTCCTGGGATTAAAGGGCAC  147
       ||| ||||| || | ||| |    || |||||||||  |       |||
seq2  ATAA-TCCAGTTCCCGGGACCCAGTGCTCTCTCCTGGTCT------CCAC  143

seq1  TGGATGCACGCAGTACATGGACATGCACACAGGTACATGTACAGATATGA  197
      ||||   |    || ||||| |   |||| |   ||||||| | |     
seq2  TGGA---ATCTTGTGCATGGCC---CACATACAAACATGTAAACA-----  182

seq1  GTGCAAACAGAACACCCACACACATAAAATAAAAATCAAAGTCGGGCATG  247
         || ||  ||   || | |  | ||| | | | |    | ||||| ||
seq2  ---CACACTTAAGTACCTCTCTTAAAAATTTACATT--GCGCCGGGCGTG  227

seq1  GTGGCGCACACCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCGGATT  297
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  GTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATT  277

seq1  TCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAG  347
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  TCTGAGTTCGAGGCCAGCCTGGTCTGCAGAGTGAGTTCTAGGACAGCCAG  327

seq1  GGCTATACAGAGAAACCCTGTCTTGAAAAAC-AAAACAAAAACAAAAACA  396
      ||||| ||||||||||||||||| ||||||| |||| |||||||||||||
seq2  GGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAAAAAAAACAAAAACA  377

seq1  AAA  399
      |||
seq2  AAA  380