BAC Information

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BAC

Clone NameB6Ng01-156M08
Chromosome7 (Build37)
Map Location 52,074,516 - 52,238,736
singlet/doubletdoublet
Overlap geneNup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1
Upstream geneKlk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5
Downstream geneBcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156M08.bB6Ng01-156M08.g
ACCDH951186DH951187
length8201,038
definitionDH951186|Mus musculus domesticus DNA, BAC clone: B6Ng01-156M08, 5' end.DH951187|Mus musculus domesticus DNA, BAC clone: B6Ng01-156M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,237,986 - 52,238,736)(52,074,516 - 52,075,566)
sequence
gaattcttccatctctccagaagccagtgcaagtgcttcctgccccagtg
taccacagacctagggatgaggtccggccctgtctgtctctggcgccctc
tagtgactggcagtggggctgcgtccatggctcatgctgcactacaaccc
tttttgataaaggagacaggacttggtgcaaatcaaatgacattctaaag
aatcctcgtcttttttccatggggctttaaaaacaacaacaacaaaaaaa
ctactagaggctgggattggggcaaagtggcggagtagttgcttagcacg
tgctggatagtggcctccatccccagcatcataaatggggaaaaaattgg
aaaatttgcataaaataattgagcttttggaggcctagggacgtacccca
gttattaaagggcttgccatgcaagcatgggtttcaggtttttttttttt
tttttttttggtttttcgagacagggtttctctttatagctctggctgtc
ctggagctcactttgtagaccaggctggccttgaactcagaaatccacct
acctctgcctcccgagtgctgggattaaaggcatgcgccaccacgcccgg
ttgggtttcagggtttaatccccaaaacccacttagaactggcagtggcg
ggctggtgagatggctcagtgggtaagagcacctgactgctcttccgaag
gtccggagttcaaatcccagcaaccacatggtggctcaaaccatctgtaa
caagatctgacgccctcttctggagtgtctgaagacagctacagtgtact
tacatataataaataaataa
gaattctctggggaccacagagcacctggcaacagctcctaggtagcaaa
gacctgtataggagccccctgggcagaacactgaaaatctggggctttgt
gctaagaaggggcctagcatcccaaaggcactagcttagttgtgaaagac
aagactggggcctgaaaaagggtaagaagaattttgcatggccacagttg
tctttgatagagcagagttccccaccctgtcctgtgaggcctcaaacctg
gactattacctagattttgttgttgctgttaaattgttttggttagtgtg
caaagaggttttgttgtgacgcttcgtatatctttatttttgtccacctg
gttgcttctcatccctgtactattgtggcaggccctggtttcccagttga
gagaacagccttgtgtgatggaaaaggattgggctttatgggttctgttt
gtgggcaggagttggtctgcctacttagattttggtggggtgtgcaccaa
cctgctacttgtcttcccagtgtgagtgtacatggtattgtgtgtctatc
cttttcctaataagtaaaagtatcccttccacttggtacagggaagggtg
agtcttcatcagtaccaggtaatgctaaaggggtagctgagggaaagctc
ttcctaggagctcagaatctggtgtagcttctcttcctgtccttccatac
ttgtgcatgactatctcctccagcacatagaggacaaggtcgggactttg
ttcatatagcccccagcactgtgctacccccacctcacccccttgggcag
cagcacacttctgaatcagttgcttgtgtggggacagaaaactcgaaagc
ataatctccacacagtgctagggaacaagtaaactgggtcacgaaaggca
gagggacaggagttggaggtgtgggtgtcctggcaaacaaggcaggaagc
cagccagtttgctggggaaaggcagtgccacgtgacagatgctcagagtc
tctagagccttgcccttctctaacacactccctttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52237986_52238736
seq2: B6Ng01-156M08.b_47_796 (reverse)

seq1  TTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGA  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGGTT-TGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGA  49

seq1  CCTTCGGAAGAGCAGTCAGGTGCTCTTACCCACTGAGCCATCTCACCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGGAAGAGCAGTCAGGTGCTCTTACCCACTGAGCCATCTCACCAGC  99

seq1  CCGCCACTGCCAGTTCTAAGTGGGTTTTGGGGATTAAACCCTGAAACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCACTGCCAGTTCTAAGTGGGTTTTGGGGATTAAACCCTGAAACCCA  149

seq1  ACCGGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGG  199

seq1  TAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGCTCCA  249

seq1  GGACAGCCAGAGCTATAAAGAGAAACCCTGTCTCGAAAAACCAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAGAGCTATAAAGAGAAACCCTGTCTCGAAAAACCAAAAAAAA  299

seq1  AAAAAAAAAAAAACCTGAAACCCATGCTTGCATGGCAAGCCCTTTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACCTGAAACCCATGCTTGCATGGCAAGCCCTTTAATAA  349

seq1  CTGGGGTACGTCCCTAGGCCTCCAAAAGCTCAATTATTTTATGCAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTACGTCCCTAGGCCTCCAAAAGCTCAATTATTTTATGCAAATTT  399

seq1  TCCAATTTTTTCCCCATTTATGATGCTGGGGATGGAGGCCACTATCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTTTTCCCCATTTATGATGCTGGGGATGGAGGCCACTATCCAGC  449

seq1  ACGTGCTAAGCAACTACTCCGCCACTTTGCCCCAATCCCAGCCTCTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCTAAGCAACTACTCCGCCACTTTGCCCCAATCCCAGCCTCTAGTA  499

seq1  GTTTTTTTGTTGTTGTTGTTTTTAAAGCCCCATGGAAAAAAGACGAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTGTTGTTGTTGTTTTTAAAGCCCCATGGAAAAAAGACGAGGAT  549

seq1  TCTTTAGAATGTCATTTGATTTGCACCAAGTCCTGTCTCCTTTATCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAATGTCATTTGATTTGCACCAAGTCCTGTCTCCTTTATCAAAA  599

seq1  AGGGTTGTAGTGCAGCATGAGCCATGGACGCAGCCCCACTGCCAGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGTAGTGCAGCATGAGCCATGGACGCAGCCCCACTGCCAGTCACT  649

seq1  AGAGGGCGCCAGAGACAGACAGGGCCGGACCTCATCCCTAGGTCTGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCGCCAGAGACAGACAGGGCCGGACCTCATCCCTAGGTCTGTGGT  699

seq1  ACACTGGGGCAGGAAGCACTTGCACTGGCTTCTGGAGAGATGGAAGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGGCAGGAAGCACTTGCACTGGCTTCTGGAGAGATGGAAGAATT  749

seq1  C  751
      |
seq2  C  750

seq1: chr7_52074516_52075566
seq2: B6Ng01-156M08.g_71_1108

seq1  GAATTCTCTGGGGACCACAGAGCACCTGGCAACAGCTCCTAGGTAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGGACCACAGAGCACCTGGCAACAGCTCCTAGGTAGCAAA  50

seq1  GACCTGTATAGGAGCCCCCTGGGCAGAACACTGAAAATCTGGGGCTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTATAGGAGCCCCCTGGGCAGAACACTGAAAATCTGGGGCTTTGT  100

seq1  GCTAAGAAGGGGCCTAGCATCCCAAAGGCACTAGCTTAGTTGTGAAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAGGGGCCTAGCATCCCAAAGGCACTAGCTTAGTTGTGAAAGAC  150

seq1  AAGACTGGGGCCTGAAAAAGGGTAAGAAGAATTTTGCATGGCCACAGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGGGCCTGAAAAAGGGTAAGAAGAATTTTGCATGGCCACAGTTG  200

seq1  TCTTTGATAGAGCAGAGTTCCCCACCCTGTCCTGTGAGGCCTCAAACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATAGAGCAGAGTTCCCCACCCTGTCCTGTGAGGCCTCAAACCTG  250

seq1  GACTATTACCTAGATTTTGTTGTTGCTGTTAAATTGTTTTGGTTAGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTACCTAGATTTTGTTGTTGCTGTTAAATTGTTTTGGTTAGTGTG  300

seq1  CAAAGAGGTTTTGTTGTGACGCTTCGTATATCTTTATTTTTGTCCACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGTTTTGTTGTGACGCTTCGTATATCTTTATTTTTGTCCACCTG  350

seq1  GTTGCTTCTCATCCCTGTACTATTGTGGCAGGCCCTGGTTTCCCAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCTCATCCCTGTACTATTGTGGCAGGCCCTGGTTTCCCAGTTGA  400

seq1  GAGAACAGCCTTGTGTGATGGAAAAGGATTGGGCTTTATGGGTTCTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGCCTTGTGTGATGGAAAAGGATTGGGCTTTATGGGTTCTGTTT  450

seq1  GTGGGCAGGAGTTGGTCTGCCTACTTAGATTTTGGTGGGGTGTGCACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGGAGTTGGTCTGCCTACTTAGATTTTGGTGGGGTGTGCACCAA  500

seq1  CCTGCTACTTGTCTTCCCAGTGTGAGTGTACATGGTATTGTGTGTCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTACTTGTCTTCCCAGTGTGAGTGTACATGGTATTGTGTGTCTATC  550

seq1  CTTTTCCTAATAAGTAAAAGTATCCCTTCCACTTGGTACAGGGAAGGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTAATAAGTAAAAGTATCCCTTCCACTTGGTACAGGGAAGGGTG  600

seq1  AGTCTTCATCAGTACCAGGTAATGCTAAAGGGGTAGCTGAGGGAAAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCATCAGTACCAGGTAATGCTAAAGGGGTAGCTGAGGGAAAGCTC  650

seq1  TTCCTAGGAGCTCAGAATCTGGTGTAGCTTCTCTTCCTGTCCTTCCATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGAGCTCAGAATCTGGTGTAGCTTCTCTTCCTGTCCTTCCATAC  700

seq1  TTGTGCATGACTATCTCCTCCAGCACATAGAGGACAAGGTCGGGACTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATGACTATCTCCTCCAGCACATAGAGGACAAGGTCGGGACTTTG  750

seq1  TTCATATAGCCCCCAGCACTGTGCTACCCCCACCTCACCCCCTTGGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAGCCCCCAGCACTGTGCTACCCCCACCTCACCCCCTTGGGCAG  800

seq1  CAGCACACTTCTGAATCAGTTGCTTGTGTGGGGACAGAAAACTCGAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACTTCTGAATCAGTTGCTTGTGTGGGGACAGAAAACTCGAAAGC  850

seq1  ATAATCTCCACACAGTGCTAGGGAACAAGTAAAACTGGGTCACGAAGGCC  900
      |||||||||||||||||||||||||||||| ||||||||||||||| | |
seq2  ATAATCTCCACACAGTGCTAGGGAACAAGT-AAACTGGGTCACGAAAGGC  899

seq1  AGAGGGACAGGAGTTGGAGGTGTGGGTGTCCTGGCAAACAAGGGCAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAGGGACAGGAGTTGGAGGTGTGGGTGTCCTGGCAAACAA-GGCAGGAA  948

seq1  GGCCAAGGCCAGTTTGGCTGGGGAAAGGGCAGTGCCACGTGGCCAGATGC  1000
       ||||  |||||||| |||||||||| ||||||||||||| | |||||||
seq2  -GCCA--GCCAGTTT-GCTGGGGAAA-GGCAGTGCCACGT-GACAGATGC  992

seq1  TCAGAGTTCTCTAGAGCCCCTGCCCTTCTCTTACAACACCTCCCCTTTAG  1050
      |||||| ||||||||| || |||||||||||   |||||   ||||||||
seq2  TCAGAG-TCTCTAGAG-CCTTGCCCTTCTCT---AACACACTCCCTTTAG  1037

seq1  A  1051
      |
seq2  A  1038