BAC Information

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BAC

Clone NameB6Ng01-157A24
Chromosome7 (Build37)
Map Location 149,406,457 - 149,583,414
singlet/doubletdoublet
Overlap geneKrtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd
Upstream geneAA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305
Downstream geneSyt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157A24.bB6Ng01-157A24.g
ACCDH951398DH951399
length1,151277
definitionDH951398|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A24, 5' end.DH951399|Mus musculus domesticus DNA, BAC clone: B6Ng01-157A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,406,457 - 149,407,611)(149,583,173 - 149,583,414)
sequence
gaattctccttcgcctcggacgtgtcactccttgattggctgcagcccat
cggccgagttgacgtcacggggaaggcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacagctgtc
agcgccatcttgtaacggcgaatgtgggcgcggctcccaacagtcacctt
atctagcaaaaggatgaatgacagtactgtgagaaagggtctttggacca
agttaatgatcttaaggtgcagagaggtccctggtttatctgtgtggtct
ccacatgccacaaaaagagcttttacagagagcgcagacagatcgacaga
cagacatgtgggagagcatactgtgtgactgaggaggcaaattgcattca
tttgatcacaagtcagaaaatgtcaatcacctggaatggcctgtgctctc
cggcagaagggaccctgctaaaccacaacttcagacctctgtcaccagaa
tttaggagaaaatgtcaaaagacacaaagtgccacactggtgtcacttgt
taaggggtcatggaaaaatcaatgcaaactttggtatctgggagcagagg
gctgcttggatggtgttggatcacatgaacatgcgatacagctaagatag
tacctaaccgcacgacttggatttaggtaattagacatggaaacacatgt
aacacatcacagaaaaggccacaaagtctgtgagcctcttagaaaccagg
gggcaagcaattgtgttatatgcacgtgggtcctggtgccaaggaggtca
agaagcagatcttgtaagtggttaatgtagatatttagctaaggatattt
ccaggccaagtattagagatgtggcctgttttctcttttctgcttgcaag
aggtgaaagagaccaccgaggaatgagtcactaagccaaaacacggccta
tcaggactgcaaaagatgctgcgttatgttaaagaggcatgtcctgcaga
cacgctgattgatgatcagctgctgactgtctgtctggcatgcaatgcac
agagctggtcagctctcagaagcagcttggaacggacatggggcatggga
aagttctagaagtgctcttcttccggaatgtagttcctgtgatatgcatg
a
aggtttcctttttccctcattttccctcgctaaagtccatgacatgaagg
ttaactattttcccaagccttacaccctctttgtgacaactatccatagt
tcttgtccagagaccttgattccagcagggtttgtcccatatccccctat
agggaaggtactgctagcccctacttctagttccctaggtagacaagggt
gattttgaactactgaccctttgtctacacttccttggtgctaggattat
atgtttgccccactcccagattatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_149406457_149407611
seq2: B6Ng01-157A24.b_45_1195

seq1  GAATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCGCCTCGGACGTGTCACTCCTTGATTGGCTGCAGCCCAT  50

seq1  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGAGTTGACGTCACGGGGAAGGCAGAGCACAAGTAGTCATAAGATA  100

seq1  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTC  150

seq1  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGTCACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCATCTTGTAACGGCGAATGTGGGCGCGGCTCCCAACAGTCACCTT  200

seq1  ATCTAGCAAAAGGATGAATGACAGTACTGTGAGAAAGGGTCTTTGGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCAAAAGGATGAATGACAGTACTGTGAGAAAGGGTCTTTGGACCA  250

seq1  AGTTAATGATCTTAAGGTGCAGAGAGGTCCCTGGTTTATCTGTGTGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGATCTTAAGGTGCAGAGAGGTCCCTGGTTTATCTGTGTGGTCT  300

seq1  CCACATGCCACAAAAAGAGCTTTTACAGAGAGCGCAGACAGATCGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGCCACAAAAAGAGCTTTTACAGAGAGCGCAGACAGATCGACAGA  350

seq1  CAGACATGTGGGAGAGCATACTGTGTGACTGAGGAGGCAAATTGCATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGTGGGAGAGCATACTGTGTGACTGAGGAGGCAAATTGCATTCA  400

seq1  TTTGATCACAAGTCAGAAAATGTCAATCACCTGGAATGGCCTGTGCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCACAAGTCAGAAAATGTCAATCACCTGGAATGGCCTGTGCTCTC  450

seq1  CGGCAGAAGGGACCCTGCTAAACCACAACTTCAGACCTCTGTCACCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGAAGGGACCCTGCTAAACCACAACTTCAGACCTCTGTCACCAGAA  500

seq1  TTTAGGAGAAAATGTCAAAAGACACAAAGTGCCACACTGGTGTCACTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGAAAATGTCAAAAGACACAAAGTGCCACACTGGTGTCACTTGT  550

seq1  TAAGGGGTCATGGAAAAATCAATGCAAACTTTGGTATCTGGGAGCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGTCATGGAAAAATCAATGCAAACTTTGGTATCTGGGAGCAGAGG  600

seq1  GCTGCTTGGATGGTGTTGGATCACATGAACATGCGATACAGCTAAGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTGGATGGTGTTGGATCACATGAACATGCGATACAGCTAAGATAG  650

seq1  TACCTAACCGCACGACTTGGATTTAGGTAATTAGACATGGAAACACATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAACCGCACGACTTGGATTTAGGTAATTAGACATGGAAACACATGT  700

seq1  AACACATCACAGAAAAGGCCACAAAGTCTGTGAGCCTCTTAGAAACCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCACAGAAAAGGCCACAAAGTCTGTGAGCCTCTTAGAAACCAGG  750

seq1  GGGCAAGCAATTGTGTTATATGCACGT-GGTCCTGGTGCCAAGGAGGTCA  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGCAAGCAATTGTGTTATATGCACGTGGGTCCTGGTGCCAAGGAGGTCA  800

seq1  AGAAGCAGATCTTGTAAGTGGTTAATGTAGATATTTAGCTAAGGATATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGATCTTGTAAGTGGTTAATGTAGATATTTAGCTAAGGATATTT  850

seq1  CCAGGCCAAGTATTAGAGATGTGGCCTGTTTTCTC-TTTCTGCTTGCAAG  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAGGCCAAGTATTAGAGATGTGGCCTGTTTTCTCTTTTCTGCTTGCAAG  900

seq1  AGGTGAAAGAGACCACCGAGGAAGGAGTCACTAAGCC-AAACACAGCCTA  947
      ||||||||||||||||||||||| ||||||||||||| |||||| |||||
seq2  AGGTGAAAGAGACCACCGAGGAATGAGTCACTAAGCCAAAACACGGCCTA  950

seq1  TCAAGACTGCAAAAGATGCTGCGTTATGTTAAAGAAGCATGTCCTGCAGA  997
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCAGGACTGCAAAAGATGCTGCGTTATGTTAAAGAGGCATGTCCTGCAGA  1000

seq1  CACAGCCTGATTGATGATCAGCTGCTGACTTGTCTGTCTGGCATGCAATG  1047
      |||   ||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAC--GCTGATTGATGATCAGCTGCTGAC-TGTCTGTCTGGCATGCAATG  1047

seq1  CACAGAGCTGGTCAGCCTTCTCAGAAGCAGCCTGGAACAGACATGGGGCA  1097
      ||||||||||||||||  ||||||||||||| |||||| |||||||||||
seq2  CACAGAGCTGGTCAGC--TCTCAGAAGCAGCTTGGAACGGACATGGGGCA  1095

seq1  TTGGGGAATGTTCTAGAA-TGCTCTTCCTTCGTGATGTGAGTTCCTGTGG  1146
      |  ||||| ||||||||| |||||||| | ||  |||| |||||||||| 
seq2  T--GGGAAAGTTCTAGAAGTGCTCTTCTTCCGGAATGT-AGTTCCTGTGA  1142

seq1  TATGCATGA  1155
      |||||||||
seq2  TATGCATGA  1151

seq1: chr7_149583173_149583414
seq2: B6Ng01-157A24.g_35_277 (reverse)

seq1  CACATAAACTGGGTGTGGGGCACACATATAATCCTAGCACCAAGGAAGTG  50
      ||||||| ||||| |||||||| |||||||||||||||||||||||||||
seq2  CACATAATCTGGGAGTGGGGCAAACATATAATCCTAGCACCAAGGAAGTG  50

seq1  TAGGCAGTAGGGTCAGAAGTTCAAAATCACCCTTGTCTACCTAGGGAACT  100
      ||| ||  |||||||| |||||||||||||||||||||||||||||||||
seq2  TAGACA-AAGGGTCAGTAGTTCAAAATCACCCTTGTCTACCTAGGGAACT  99

seq1  AGAAGTAGGGGCTAGCAGTACCTTCCCTCTAGGGGGATCTGGGACAAACC  150
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  AGAAGTAGGGGCTAGCAGTACCTTCCCTATAGGGGGATATGGGACAAACC  149

seq1  CTGCTGGAATCAAGGTCTCAGGACAAGAACTCTGGATAGTTGTCACAAAG  200
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  CTGCTGGAATCAAGGTCTCTGGACAAGAACTATGGATAGTTGTCACAAAG  199

seq1  AGGGTGTAAGGCTTGGG-CAATAGTTAACCTTCATGTC-TGGAC  242
      |||||||||||||||||  ||||||||||||||||||| |||||
seq2  AGGGTGTAAGGCTTGGGAAAATAGTTAACCTTCATGTCATGGAC  243