BAC Information

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BAC

Clone NameB6Ng01-157E07
Chromosome7 (Build37)
Map Location 52,678,488 - 52,829,962
singlet/doubletdoublet
Overlap geneRuvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2
Upstream geneLrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb
Downstream geneFgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157E07.bB6Ng01-157E07.g
ACCDH951551DH951552
length3281,084
definitionDH951551|Mus musculus domesticus DNA, BAC clone: B6Ng01-157E07, 5' end.DH951552|Mus musculus domesticus DNA, BAC clone: B6Ng01-157E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,829,636 - 52,829,962)(52,678,488 - 52,679,574)
sequence
agggctggttgtgcacagggggggaggggggacgtgtcctggtattttgg
tgtcatgcttttctctgcagaccatggagaggcagctgagtccttagttt
gaggaagacaggataacagcctgttcccgctgctagaggccagtgagatg
gagaggcttgcagaggtcactgatcaatgggtgagtctcaaatgtcgtat
ggataagtctgggccaggacatgggtttgtttccttccttccttccttcc
ttccttacttccttccttccttccttccatttttggaggggagatggctt
aatacagggtctaagtttgccctctgac
gaattccaggtgaacatcagctagcaaaggggtccttagggctgcctccc
ctccaccttcaaatctatggccttgagcaagctgtccagctttgctggcc
tactctgtgaagtgggagtagtaaggtgaagtgcagggaaggtagccagg
tcccagcctgttaggcctgtctgccatctgccttcaccacaactacacct
aactctagttccaggggacctggagacttcttgtggcatctgtgggtacc
acatacgtgtgtacacataacatagacacacacataaaagtaaatcagag
aaggggctggagagatggttagaatacacactgttctgtaagaggaccca
cacctggtagctcacacctgctgctaagtctacctgcaggggatctgcca
tactattttggactctgcccacacttacattcatgcttgcaagtatcacc
tcccccaccttcacacaacaacaacaaaaaagatgtcatgctaagaccac
acgaggcagggtgatgtgcttgatgaagcccaggagccaccatcaaaggg
agtttggctccccacacttgggtttgtgtgctctcttaatctgggtctca
tgtatgtagcccaggctagcctagaactcaaactcctcctgtctcagcct
acacagcactacgactatggttggtagcgacatgcccagtgtccacagca
tctttaggtcaatacttgtgggctgtgatgattgagtggcggggtctgag
tgacaaattgatcataggcagtttgtgacatatctaggagatagccctgt
gctcagcacagggtctgcccaggactgtgagggccacactgtgtgagggc
cactttggaggcaagccagcaagacaatccatttaccttgaggccaccca
ccatcaacctctggctcagaactcgcttctccccagagtacctctaaagc
tgcttactcacgggtgatccctcggttggtggccatgatgaggacaggcg
tcatgtcgcttctcaaggcccggttgagaagagaacttctcaatgtccag
catggtggactcgtcgaatgacacgacctggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52829636_52829962
seq2: B6Ng01-157E07.b_52_379 (reverse)

seq1  GTCAGTGGGC-AACTTAGACCCTGTCTTAAGCCCTCTCCCCTCCAAAAAA  49
      ||||| |||| |||||||||||||| ||||||| ||||||||||||||| 
seq2  GTCAGAGGGCAAACTTAGACCCTGTATTAAGCCATCTCCCCTCCAAAAAT  50

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAC  99
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGTAAGGAAGGAAGGAAGGAAGGAAGGAAAC  100

seq1  AAACCCATGTCCTGGCCCAGACTTATCCATACGACATTTGAGACTCACCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCATGTCCTGGCCCAGACTTATCCATACGACATTTGAGACTCACCC  150

seq1  ATTGATCAGTGACCTCTGCAAGCCTCTCCATCTCACTGGCCTCTAGCAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCAGTGACCTCTGCAAGCCTCTCCATCTCACTGGCCTCTAGCAGC  200

seq1  GGGAACAGGCTGTTATCCTGTCTTCCTCAAACTAAGGACTCAGCTGCCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGGCTGTTATCCTGTCTTCCTCAAACTAAGGACTCAGCTGCCTC  250

seq1  TCCATGGTCTGCAGAGAAAAGCATGACACCAAAATACCAGGACACGTCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTCTGCAGAGAAAAGCATGACACCAAAATACCAGGACACGTCCC  300

seq1  CCCTCCCCCCCTGTGCACAACCAGCCCT  327
      ||||||||||||||||||||||||||||
seq2  CCCTCCCCCCCTGTGCACAACCAGCCCT  328

seq1: chr7_52678488_52679574
seq2: B6Ng01-157E07.g_69_1152

seq1  GAATTCCAGGTGAACATCAGCTAGCAAAGGGGTCCTTAGGGCTGCCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGAACATCAGCTAGCAAAGGGGTCCTTAGGGCTGCCTCCC  50

seq1  CTCCACCTTCAAATCTATGGCCTTGAGCAAGCTGTCCAGCTTTGCTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTTCAAATCTATGGCCTTGAGCAAGCTGTCCAGCTTTGCTGGCC  100

seq1  TACTCTGTGAAGTGGGAGTAGTAAGGTGAAGTGCAGGGAAGGTAGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTGAAGTGGGAGTAGTAAGGTGAAGTGCAGGGAAGGTAGCCAGG  150

seq1  TCCCAGCCTGTTAGGCCTGTCTGCCATCTGCCTTCACCACAACTACACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCTGTTAGGCCTGTCTGCCATCTGCCTTCACCACAACTACACCT  200

seq1  AACTCTAGTTCCAGGGGACCTGGAGACTTCTTGTGGCATCTGTGGGTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGTTCCAGGGGACCTGGAGACTTCTTGTGGCATCTGTGGGTACC  250

seq1  ACATACGTGTGTACACATAACATAGACACACACATAAAAGTAAATCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACGTGTGTACACATAACATAGACACACACATAAAAGTAAATCAGAG  300

seq1  AAGGGGCTGGAGAGATGGTTAGAATACACACTGTTCTGTAAGAGGACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTGGAGAGATGGTTAGAATACACACTGTTCTGTAAGAGGACCCA  350

seq1  CACCTGGTAGCTCACACCTGCTGCTAAGTCTACCTGCAGGGGATCTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTAGCTCACACCTGCTGCTAAGTCTACCTGCAGGGGATCTGCCA  400

seq1  TACTATTTTGGACTCTGCCCACACTTACATTCATGCTTGCAAGTATCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTTGGACTCTGCCCACACTTACATTCATGCTTGCAAGTATCACC  450

seq1  TCCCCCACCTTCACACAACAACAACAAAAAAGATGTCATGCTAAGACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCTTCACACAACAACAACAAAAAAGATGTCATGCTAAGACCAC  500

seq1  ACGAGGCAGGGTGATGTGCTTGATGAAGCCCAGGAGCCACCATCAAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGCAGGGTGATGTGCTTGATGAAGCCCAGGAGCCACCATCAAAGGG  550

seq1  AGTTTGGCTCCCCACACTTGGGTTTGTGTGCTCTCTTAATCTGGGTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGCTCCCCACACTTGGGTTTGTGTGCTCTCTTAATCTGGGTCTCA  600

seq1  TGTATGTAGCCCAGGCTAGCCTAGAACTCAAACTCCTCCTGTCTCAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAGCCCAGGCTAGCCTAGAACTCAAACTCCTCCTGTCTCAGCCT  650

seq1  ACACAGCACTACGACTATGGTTGGTAGCGACATGCCCAGTGTCCACAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCACTACGACTATGGTTGGTAGCGACATGCCCAGTGTCCACAGCA  700

seq1  TCTTTAGGTCAATACTTGTGGGCTGTGATGATTGAGTGGCGGGGTCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGTCAATACTTGTGGGCTGTGATGATTGAGTGGCGGGGTCTGAG  750

seq1  TGACAAATTGATCATAGGCAGTTTGTGACATATCTAGGAGATAGCCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATTGATCATAGGCAGTTTGTGACATATCTAGGAGATAGCCCTGT  800

seq1  GCTCAGCACAGGGTCTGCCCAGGACTGTGAGGGCCACACTGTGTGAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCACAGGGTCTGCCCAGGACTGTGAGGGCCACACTGTGTGAGGGC  850

seq1  CACATTGGAGGCAAGCCCAGCAAGACAATCCATTTACCTTGAGGCCACCC  900
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACTTTGGAGGCAAG-CCAGCAAGACAATCCATTTACCTTGAGGCCACCC  899

seq1  ACCATCAACCCCTGGCCCAGAACGCGCTTCCCCCCAGAG-ACCTCTAAAG  949
      |||||||||| ||||| |||||| |||||| |||||||| ||||||||||
seq2  ACCATCAACCTCTGGCTCAGAACTCGCTTCTCCCCAGAGTACCTCTAAAG  949

seq1  CTGCTTACTCACCGGGTGATCCCTCGGTTGGTGGCCATGATGAGGACAGG  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTACTCA-CGGGTGATCCCTCGGTTGGTGGCCATGATGAGGACAGG  998

seq1  CGCCATGTCGCTCTCCAGGGCCCGGTTGAGGAAAGAGAAACTCTCAATGT  1049
      || |||||||||   || ||||||||||||  |||||||  |||||||||
seq2  CGTCATGTCGCTTCTCAAGGCCCGGTTGAG--AAGAGAACTTCTCAATGT  1046

seq1  CCAGCAT-GTGGACCTCGTCGATGAACAGCACCTGGAAG  1087
      ||||||| ||||| ||||||||   |||  |||||||||
seq2  CCAGCATGGTGGA-CTCGTCGAATGACACGACCTGGAAG  1084