BAC Information

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BAC

Clone NameB6Ng01-157G09
Chromosome7 (Build37)
Map Location 11,403,280 - 11,404,315
singlet/doubletsinglet
Overlap geneLOC637237
Upstream geneVmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217
Downstream geneLOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157G09.bB6Ng01-157G09.g
ACCDH951643DH951644
length1,1491,033
definitionDH951643|Mus musculus domesticus DNA, BAC clone: B6Ng01-157G09, 5' end.DH951644|Mus musculus domesticus DNA, BAC clone: B6Ng01-157G09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ctcagcttcattaatcatcagagatatgcaaatcaaaacaaccctgagac
tccatctcacattagtcagaatggccaagatcaaaaattcaggtgacagc
agatgttggcaaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaagcttgtacaaccaatctggaaatcggtctggtggttcctca
gaaaattctacatagtactactggaggatcccacaatacctctcctgggc
atatatccagaagatgtcccaacctgtaagaaggacacatgctccactat
gttcatagcagccttattcataatagccagaagttggaaagaacccagat
gcccctcaacagaggaatggatacacaaaatgtggtacatttcacaatgg
agtactactcagctattaaaaagaattaatttatgaaattcctaggcaaa
tggttggacctgaagggcatcatcctgagtgaggtaacacaatcacaaaa
gaactcaaatgatatgtactcactgataagtggatattagcccagaaaca
tagtatacctgagatataagagacaatttgtaaaacacatgacactgaag
aagaagaccaaagtgtggacactgtgccccttcttagaattggaaacaat
cacccatggaaggagttacagaaacaaagttttgagctgagacaaaagga
tggaccatgtagagactgccatatccagggatccatcccataattagcct
ccaaatgatgacactattgcatatactagcaagcgtttcctgaaaggacc
ctgatatagctgtctcttatgagactaggccgtggcctaacaaacacata
agtggatgctcacagtcaactattggatggatcacagggcccccaatcga
ggagctactagagatagtatccaaggagctaaagtagtgcaacattatga
ctaccagatcccggaactcttgtctctagtgcatatatatcaaagatgct
agcggcatcactggaaagagaaggccattggacttgcaaactttaagccc
agtacagggaaatgtcagggccaaaaggggaatgtgttggtaggggagt
gaattcatctcacatggaaggcccagatacaaactgggccttggggttaa
caagcaccttttccaaatacaaacttttcaaatgcacttgcaaattgaaa
gaattgggtgggtggggtgatgaactcagtagataagaacaggtcctttg
tgatcaggaaacctgactttaaatgaaatgaacctgcaaatacctgacca
tgactctggattaatttaacccctgccttgagtgatggagacaagcagat
cctaaaagctggccagacactggcagaaatgactgggtgaggtccaatga
gagaccttgccttaaaggaatatagttaataaagacactgaatgtcatcc
tctgtctttgttagtatgtgtctgtaggcatgtacacacacacagacaca
cacacacacacacacacacatacacaacacaaatagagttttgctttcct
agtctttatcagtgtttgcctttgccagtaggattccatgaaaattagca
accatcccaggaaggaatttccccatgttgatgagctacatttccttggt
tcctcttgagacacacaccatcattatgtacatcttaaatcttcctcaga
caaaaggatagaccatctagagactgccatacccacggatctaccccata
atcagcctccaaactctgacaccattgcatacaccagcaagattttgctg
aaaggaccctgatatagctgtctcttgtgaggctatgccagggacgggta
aacacagaagtggaggctcacggtcagctattggatggatcacagggcct
ccaatggaagagttagagaaagtactcaagagctaaagggagtctgcacc
atataggtagaacaacatatgaactacccagtacttcagagctcatgtct
ctagctgcatatatatagagatggcctaagtcggccatcattgggagaga
ggctccttggtcttgcaaactttatataccttcatacagggcgatgctca
gactcaagaagtggggagtggggggggggtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11403280_11404315
seq2: B6Ng01-157G09.g_68_1100

seq1  GAATTCATCTCACATGGAAGGCCCAGATACAAACTGGGCCTTGGGGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCACATGGAAGGCCCAGATACAAACTGGGCCTTGGGGTTAA  50

seq1  CAAGCACCTTTTCCAAATACAAACTTTTCAAATGCACTTGCAAATTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCTTTTCCAAATACAAACTTTTCAAATGCACTTGCAAATTGAAA  100

seq1  GAATTGGGTGGGTGGGGTGATGAACTCAGTAGATAAGAACAGGTCCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGTGGGTGGGGTGATGAACTCAGTAGATAAGAACAGGTCCTTTG  150

seq1  TGATCAGGAAACCTGACTTTAAATGAAATGAACCTGCAAATACCTGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGGAAACCTGACTTTAAATGAAATGAACCTGCAAATACCTGACCA  200

seq1  TGACTCTGGATTAATTTAACCCCTGCCTTGAGTGATGGAGACAAGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGGATTAATTTAACCCCTGCCTTGAGTGATGGAGACAAGCAGAT  250

seq1  CCTAAAAGCTGGCCAGACACTGGCAGAAATGACTGGGTGAGGTCCAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGCTGGCCAGACACTGGCAGAAATGACTGGGTGAGGTCCAATGA  300

seq1  GAGACCTTGCCTTAAAGGAATATAGTTAATAAAGACACTGAATGTCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTGCCTTAAAGGAATATAGTTAATAAAGACACTGAATGTCATCC  350

seq1  TCTGTCTTTGTTAGTATGTGTCTGTAGGCATGTACACACACACAGACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTGTTAGTATGTGTCTGTAGGCATGTACACACACACAGACACA  400

seq1  CACACACACACACACACACATACACAACACAAATAGAGTTTTGCTTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACACAACACAAATAGAGTTTTGCTTTCCT  450

seq1  AGTCTTTATCAGTGTTTGCCTTTGCCAGTAGGATTCCATGAAAATTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTATCAGTGTTTGCCTTTGCCAGTAGGATTCCATGAAAATTAGCA  500

seq1  ACCATCCCAGGAAGGAATTTCCCCATGTTGATGAGCTACATTTCCTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCAGGAAGGAATTTCCCCATGTTGATGAGCTACATTTCCTTGGT  550

seq1  TCCTCTTGAGACACACACCATCATTATGTACATCTTAAATCTTCCTCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGAGACACACACCATCATTATGTACATCTTAAATCTTCCTCAGA  600

seq1  CAAAAGGATAGACCATCTAGAGACTGCCATACCCACGGATCTACCCCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGATAGACCATCTAGAGACTGCCATACCCACGGATCTACCCCATA  650

seq1  ATCAGCCTCCAAACTCTGACACCATTGCATACACCAGCAAGATTTTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCTCCAAACTCTGACACCATTGCATACACCAGCAAGATTTTGCTG  700

seq1  AAAGGACCCTGATATAGCTGTCTCTTGTGAGGCTATGCCAGGGACGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACCCTGATATAGCTGTCTCTTGTGAGGCTATGCCAGGGACGGGTA  750

seq1  AACACAGAAGTGGAGGCTCACGGTCAGCTATTGGATGGATCACAGGGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACACAGAAGTGGAGGCTCACGGTCAGCTATTGGATGGATCACAGGGCCT  800

seq1  CCAATGGAAGAGCTAGAGAAAGTACCCAAGGAGCTAAA-GGAGTCTGCAA  849
      |||||||||||| |||||||||||| ||| |||||||| ||||||||| |
seq2  CCAATGGAAGAGTTAGAGAAAGTACTCAA-GAGCTAAAGGGAGTCTGC-A  848

seq1  CCATATAGGTAGAACAACAATATGAACTAACCAGTACCTCCAGAGCTCAT  899
      |||||||||||||||||| |||||||||| |||||| || ||||||||||
seq2  CCATATAGGTAGAACAAC-ATATGAACTACCCAGTA-CTTCAGAGCTCAT  896

seq1  GTCTCTAGCTGCATATATATTAGAAGATGGCCT-AGTCGGCCATCATTGG  948
      ||||||||||||||||||| ||| ||||||||| ||||||||||||||||
seq2  GTCTCTAGCTGCATATATA-TAG-AGATGGCCTAAGTCGGCCATCATTGG  944

seq1  GAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATACCTCAGTACAGGCGA  998
      | |||||||| |||||||||||||||||||||||||||   ||||||   
seq2  G-AGAGAGGCTCCTTGGTCTTGCAAACTTTATATACCTTCATACAGGGCG  993

seq1  ATGCCAAGAC-CAAGAAGT-GGGAGTGGGGGGGGGGTATG  1036
      ||||  |||| |||||||| ||||||||||||||||||||
seq2  ATGCTCAGACTCAAGAAGTGGGGAGTGGGGGGGGGGTATG  1033