BAC Information

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BAC

Clone NameB6Ng01-157I20
Chromosome7 (Build37)
Map Location 11,394,238 - 11,505,450
singlet/doubletdoublet
Overlap geneLOC637237, LOC236479, EG665879, Zscan4b
Upstream geneVmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217
Downstream geneLOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157I20.bB6Ng01-157I20.g
ACCDH951754DH951755
length1,102245
definitionDH951754|Mus musculus domesticus DNA, BAC clone: B6Ng01-157I20, 5' end.DH951755|Mus musculus domesticus DNA, BAC clone: B6Ng01-157I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,504,334 - 11,505,450)(11,394,238 - 11,394,482)
sequence
gaattcaaatgaatctgtctgcctctggctccagagagctggcatcaaag
gcctgtgtttccacaacacaaggccaatccaagtattataaccctcctta
tgcagtaaagtttttgtttccacaaaggctcactactttctttttttgtt
ttgttttttgttttgttttgttttttgttttgtttttgttattccagaca
gggtttctctgtgtagccctgtgtagctctgtaactcactctgttcaagc
ccaatctggccttgaactcagaaatctgcctgcctctgcctcccaagtgc
tgagattaaaggcaggctccactagtgcccagctgactcactgcttttaa
aggaaattgactgcctggagcagtgaccctttcctgttcttttcagagta
ggcaatgtgagtaaaattgtaaagaccaactccagctaaggggaaaaaac
aaaacaccacctgaaaaacaagcaaacacactggtctcccattgtattcc
cttctggatagttttgaactcacagagacacactcctcccctcctccctg
cactcccaatatgcacacacctctaccacccaggtgctgtcattatatgt
gtgccctaaagccagctagctaagagatatattttaagagtagtcactat
gccaaaaacaaaaatctatagccttctagtttttgtttttattgctgttt
ttattgtttgtttttttgtttgtttttttgttttttgagaccttgtctca
ctgtagcctaggttggtctggaattcactatgaagcccatgtcttgtcat
gtacccaatggacaccctgggctgtgcaagtagactggcctcaagcagta
catctttgtgggatagttttacataatgtgcattcaaatgctgatttctg
tgcaaggacacctaattgctattggctgttggcactgtcataatgttgaa
gcatctctgtctcagtgtgaaaattgttcttcatcacctctgattggcta
atgtgagagcttttggaggttgcttctaggagtcactgatcacccctaga
ccccggtagaatgggacttggttattgcctgttgatacctttgacaattg
tc
cagaccaacctaggctacagtgagacgcggtctcaaaaaacaaaaaaaca
acaacaacaactaaagaaaaatcaaacctcaagcaataaaaactaaaact
ggaaggctatagatttttgtttttagcatagtgactactcttaaaatata
tctcttagctggctggctgtagggcatgcctttaatcccagcacctgggt
ggcagaggtgtgtgcatattgggagtgcaggggggaggggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11504334_11505450
seq2: B6Ng01-157I20.b_49_1150 (reverse)

seq1  GACAATAGTCAAAGTAATCAAACAGGCAATAAACAAAGTCCCATTCTTAC  50
      |||||| |||||||  ||| |||||||||| ||| ||||||||||||  |
seq2  GACAATTGTCAAAGGTATC-AACAGGCAAT-AACCAAGTCCCATTCTACC  48

seq1  CGTGTCTAGGGGTTGATCAGGTTGACCTTCCTAGAAGCAACCT-CAAAAG  99
       | ||||||||| |||||||  ||||  ||||||||||||||| ||||||
seq2  GGGGTCTAGGGG-TGATCAG--TGAC--TCCTAGAAGCAACCTCCAAAAG  93

seq1  CTCTCCACATTTAGCCAATCAGAGGTGATGGAGAACAATTTTTCACAACC  149
      |||| |||| |||||||||||||||||||| ||||||| ||||||||   
seq2  CTCT-CACA-TTAGCCAATCAGAGGTGATGAAGAACAA-TTTTCACA---  137

seq1  TTGAGACAGGAGATGCTTCAACAATTATGACAGTGCCAACAGCCAATAGC  199
       ||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  CTGAGACA-GAGATGCTTCAAC-ATTATGACAGTGCCAACAGCCAATAGC  185

seq1  AATTAGGTGTCCTTGCACAGAAATCAGCATTTGAATGCACATTATGTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGTGTCCTTGCACAGAAATCAGCATTTGAATGCACATTATGTAAA  235

seq1  ACTATCCCACAAAGATGTACTGCTTGAGGCCAGTCTACTTTGCACAGCCC  299
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTATCCCACAAAGATGTACTGCTTGAGGCCAGTCTAC-TTGCACAGCCC  284

seq1  AGGGTGTCCATTGGGTACATGACAAGACATGGGCTTCATAGTGAATTCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTCCATTGGGTACATGACAAGACATGGGCTTCATAGTGAATTCCA  334

seq1  GACCAACCTAGGCTACAGTGAGACAAGGTCTCAAAAAACAAAAAAACAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACCTAGGCTACAGTGAGACAAGGTCTCAAAAAACAAAAAAACAAA  384

seq1  CAAAAAAACAAACAATAAAAACAGCAATAAAAACAAAAACTAGAAGGCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACAAACAATAAAAACAGCAATAAAAACAAAAACTAGAAGGCTA  434

seq1  TAGATTTTTGTTTTTGGCATAGTGACTACTCTTAAAATATATCTCTTAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTTGTTTTTGGCATAGTGACTACTCTTAAAATATATCTCTTAGC  484

seq1  TAGCTGGCTTTAGGGCACACATATAATGACAGCACCTGGGTGGTAGAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGCTTTAGGGCACACATATAATGACAGCACCTGGGTGGTAGAGGT  534

seq1  GTGTGCATATTGGGAGTGCAGGGAGGAGGGGAGGAGTGTGTCTCTGTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATATTGGGAGTGCAGGGAGGAGGGGAGGAGTGTGTCTCTGTGAG  584

seq1  TTCAAAACTATCCAGAAGGGAATACAATGGGAGACCAGTGTGTTTGCTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACTATCCAGAAGGGAATACAATGGGAGACCAGTGTGTTTGCTTG  634

seq1  TTTTTCAGGTGGTGTTTTGTTTTTTCCCCTTAGCTGGAGTTGGTCTTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGGTGGTGTTTTGTTTTTTCCCCTTAGCTGGAGTTGGTCTTTAC  684

seq1  AATTTTACTCACATTGCCTACTCTGAAAAGAACAGGAAAGGGTCACTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACTCACATTGCCTACTCTGAAAAGAACAGGAAAGGGTCACTGCT  734

seq1  CCAGGCAGTCAATTTCCTTTAAAAGCAGTGAGTCAGCTGGGCACTAGTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGTCAATTTCCTTTAAAAGCAGTGAGTCAGCTGGGCACTAGTGG  784

seq1  AGCCTGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCCTTTAATCTCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTG  834

seq1  AGTTCAAGGCCAGATTGGGCTTGAACAGAGTGAGTTACAGAGCTACACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGCCAGATTGGGCTTGAACAGAGTGAGTTACAGAGCTACACAG  884

seq1  GGCTACACAGAGAAACCCTGTCTGGAATAACAAAAACAAAACAAAAAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGAGAAACCCTGTCTGGAATAACAAAAACAAAACAAAAAACA  934

seq1  AAACAAAACAAAAAACAAAACAAAAAAAGAAAGTAGTGAGCCTTTGTGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAAAACAAAACAAAAAAAGAAAGTAGTGAGCCTTTGTGGA  984

seq1  AACAAAAACTTTACTGCATAAGGAGGGTTATAATACTTGGATTGGCCTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACTTTACTGCATAAGGAGGGTTATAATACTTGGATTGGCCTTG  1034

seq1  TGTTGTGGAAACACAGGCCTTTGATGCCAGCTCTCTGGAGCCAGAGGCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGAAACACAGGCCTTTGATGCCAGCTCTCTGGAGCCAGAGGCAG  1084

seq1  ACAGATTCATTTGAATTC  1117
      ||||||||||||||||||
seq2  ACAGATTCATTTGAATTC  1102

seq1: chr7_11394238_11394482
seq2: B6Ng01-157I20.g_73_317

seq1  CAGACCAACCTAGGCTACAGTGAGACGCGGTCTCAAAAAACAAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAACCTAGGCTACAGTGAGACGCGGTCTCAAAAAACAAAAAAACA  50

seq1  ACAACAACAACTAAAGAAAAATCAAACCTCAAGCAATAAAAACTAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAACTAAAGAAAAATCAAACCTCAAGCAATAAAAACTAAAACT  100

seq1  GGAAGGCTATAGATTTTTGTTTTTAGCATAGTGACTACTCTTAAAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTATAGATTTTTGTTTTTAGCATAGTGACTACTCTTAAAATATA  150

seq1  TCTCTTAGCTGGCTGGCTGTAGGGCATGCCTTTAATCCCAGCACCTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGCTGGCTGGCTGTAGGGCATGCCTTTAATCCCAGCACCTGGGT  200

seq1  GGCAGAGGTGTGTGCATATTGGGAGTGCAGGGGGGAGGGGAGGAG  245
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGTGTGTGCATATTGGGAGTGCAGGGGGGAGGGGAGGAG  245