BAC Information

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BAC

Clone NameB6Ng01-157P07
Chromosome7 (Build37)
Map Location 29,250,859 - 29,361,008
singlet/doubletdoublet
Overlap geneLOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4
Upstream geneBlvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1
Downstream geneC330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157P07.bB6Ng01-157P07.g
ACCDH952044DH952045
length1,041441
definitionDH952044|Mus musculus domesticus DNA, BAC clone: B6Ng01-157P07, 5' end.DH952045|Mus musculus domesticus DNA, BAC clone: B6Ng01-157P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,359,961 - 29,361,008)(29,250,859 - 29,251,305)
sequence
gaattctccctggtgcctcccaagcttcctccaccaggctacgctgcgac
ttgtgtttgaggggcaggagctcagctctgagcttacctcatcatgctgt
acagtaagcactggcccaaccaccgcctcccggctcacgcccccatgaca
gctgtcactcacatgcttagtttgctgtaagatagagaatgggggactat
gatttccagctagtcatggtaactgcgtgtatcttgagatccagtacgcc
catctgtctgtgggcttgtttgggttactgttgcagggtctgtgatatga
cagtgtacgttgtactaatagttatcactggctgcatggcaagcgccgag
gtgtgtgaggtgccgagtgttgtgtggcatggcagggctgtggacaggag
cctcctttctacctgtccttcctccagggattcaggggactcttaggttt
tctgtggcagccatcacatcctgggcactaaccaggcactatggggatga
gtccaggatgcctgcgcctggccagatcggaggcagtagctggccagaca
gcttctcttcagccttcctctgcagttcactcttctcgcccatgatgcat
acagctggggatacaacattccccatcctaacccccaggcaaagtgtggt
actggaggggactgtaaccggggttgtcactggtgtgcatattcagcctc
tctctgctgcagaagcagcagcaggaatggaaacagcagcagctgtgtga
gccccatggcagaccctgttctacatatgtgacttgtgtcgtctaaatat
tcccagcaggtagagactatcacagtctgccgtttgcagacagaacactg
aggtccagagaggttagatgacttgtccacatgtgtgcggctggaatggc
tgagccagcacctgggtctggacagtctgctcataggcccacagagcacc
ttgtactgagtgccagagagacagccctgtgcaatggggctgtccttcta
gcagaagatgtccatagagatcacccagacagatgagaaga
tggtggtacaacgaagagcgttcatagaacagccggttgcctctagagga
gctgtcccaaggtgcctcgaagggcttgtaagccagagtgcaacttagaa
gggcagtgagtgggaatatgtagcttaggtgctttggaaactgagccagg
agctggggctggccttgcagcatgctcccttccggaaaggtaagagtgta
tcaaagaggagagtggagtgcttgcaggaagtcctggatttgttccctat
caccacaaaaacaaacaaacaaacaaacaaacaaaacccagacaaaccaa
tatgtacacatctgtaagcctgaaattccagcattcaggaggtggaggct
ggttgaagaccagggactaccagtccaccacccttaactccaatgtccat
ctgaatggaggaagggcacacagattgggggggggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_29359961_29361008
seq2: B6Ng01-157P07.b_47_1087 (reverse)

seq1  TCTTCTCATCCTGTCTGGGTGATCTTCTATGGACATCTTCCTGCTAGAAG  50
      ||||||||| |||||||||||||| |||||||||||||| ||||||||||
seq2  TCTTCTCAT-CTGTCTGGGTGATC-TCTATGGACATCTT-CTGCTAGAAG  47

seq1  GACAGCCCCATTTGCACAGGGCCTGTCTCTCTTGGCCACTCAGTACAAGG  100
      |||||||||| |||||||||| ||||||||||  | ||||||||||||||
seq2  GACAGCCCCA-TTGCACAGGG-CTGTCTCTCT--GGCACTCAGTACAAGG  93

seq1  TGCTCTGTGGGCCTATGAGCAGACTGTCCAGACCCAGGTGCTGGCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTGGGCCTATGAGCAGACTGTCCAGACCCAGGTGCTGGCTCAGC  143

seq1  CATTCCAGCCGCACACATGTGGACAAGTCATCTAACCTCTCTGGACCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGCCGCACACATGTGGACAAGTCATCTAACCTCTCTGGACCTCA  193

seq1  GTGTTCTGTCTGCAAACGGCAGACTGTGATAGTCTCTACCTGCTGGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGTCTGCAAACGGCAGACTGTGATAGTCTCTACCTGCTGGGAAT  243

seq1  ATTTAGACGACACAAGTCACATATGTAGAACAGGGTCTGCCATGGGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACGACACAAGTCACATATGTAGAACAGGGTCTGCCATGGGGCTC  293

seq1  ACACAGCTGCTGCTGTTTCCATTCCTGCTGCTGCTTCTGCAGCAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTGCTGCTGTTTCCATTCCTGCTGCTGCTTCTGCAGCAGAGAGA  343

seq1  GGCTGAATATGCACACCAGTGACAACCCCGGTTACAGTCCCCTCCAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAATATGCACACCAGTGACAACCCCGGTTACAGTCCCCTCCAGTAC  393

seq1  CACACTTTGCCTGGGGGTTAGGATGGGGAATGTTGTATCCCCAGCTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTGCCTGGGGGTTAGGATGGGGAATGTTGTATCCCCAGCTGTAT  443

seq1  GCATCATGGGCGAGAAGAGTGAACTGCAGAGGAAGGCTGAAGAGAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATGGGCGAGAAGAGTGAACTGCAGAGGAAGGCTGAAGAGAAGCTG  493

seq1  TCTGGCCAGCTACTGCCTCCGATCTGGCCAGGCGCAGGCATCCTGGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCAGCTACTGCCTCCGATCTGGCCAGGCGCAGGCATCCTGGACTC  543

seq1  ATCCCCATAGTGCCTGGTTAGTGCCCAGGATGTGATGGCTGCCACAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCATAGTGCCTGGTTAGTGCCCAGGATGTGATGGCTGCCACAGAAA  593

seq1  ACCTAAGAGTCCCCTGAATCCCTGGAGGAAGGACAGGTAGAAAGGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGAGTCCCCTGAATCCCTGGAGGAAGGACAGGTAGAAAGGAGGCT  643

seq1  CCTGTCCACAGCCCTGCCATGCCACACAACACTCGGCACCTCACACACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCACAGCCCTGCCATGCCACACAACACTCGGCACCTCACACACCT  693

seq1  CGGCGCTTGCCATGCAGCCAGTGATAACTATTAGTACAACGTACACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGCTTGCCATGCAGCCAGTGATAACTATTAGTACAACGTACACTGTC  743

seq1  ATATCACAGACCCTGCAACAGTAACCCAAACAAGCCCACAGACAGATGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACAGACCCTGCAACAGTAACCCAAACAAGCCCACAGACAGATGGG  793

seq1  CGTACTGGATCTCAAGATACACGCAGTTACCATGACTAGCTGGAAATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTGGATCTCAAGATACACGCAGTTACCATGACTAGCTGGAAATCAT  843

seq1  AGTCCCCCATTCTCTATCTTACAGCAAACTAAGCATGTGAGTGACAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCCATTCTCTATCTTACAGCAAACTAAGCATGTGAGTGACAGCTG  893

seq1  TCATGGGGGCGTGAGCCGGGAGGCGGTGGTTGGGCCAGTGCTTACTGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGGGCGTGAGCCGGGAGGCGGTGGTTGGGCCAGTGCTTACTGTAC  943

seq1  AGCATGATGAGGTAAGCTCAGAGCTGAGCTCCTGCCCCTCAAACACAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATGAGGTAAGCTCAGAGCTGAGCTCCTGCCCCTCAAACACAAGT  993

seq1  CGCAGCGTAGCCTGGTGGAGGAAGCTTGGGAGGCACCAGGGAGAATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCGTAGCCTGGTGGAGGAAGCTTGGGAGGCACCAGGGAGAATTC  1041

seq1: chr7_29250859_29251305
seq2: B6Ng01-157P07.g_70_516

seq1  GAATTCTGGTGGTACAACGAAGAGCGTTCATAGAACAGCCGGTTGCCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTGGTACAACGAAGAGCGTTCATAGAACAGCCGGTTGCCTCT  50

seq1  AGAGGAGCTGTCCCAAGGTGCCTCGAAGGGCTTGTAAGCCAGAGTGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTGTCCCAAGGTGCCTCGAAGGGCTTGTAAGCCAGAGTGCAAC  100

seq1  TTAGAAGGGCAGTGAGTGGGAATATGTAGCTTAGGTGCTTTGGAAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGGCAGTGAGTGGGAATATGTAGCTTAGGTGCTTTGGAAACTGA  150

seq1  GCCAGGAGCTGGGGCTGGCCTTGCAGCATGCTCCCTTCCGGAAAGGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAGCTGGGGCTGGCCTTGCAGCATGCTCCCTTCCGGAAAGGTAAG  200

seq1  AGTGTATCAAAGAGGAGAGTGGAGTGCTTGCAGGAAGTCCTGGATTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATCAAAGAGGAGAGTGGAGTGCTTGCAGGAAGTCCTGGATTTGTT  250

seq1  CCCTATCACCACAAAAACAAACAAACAAACAAACAAACAAAACCCAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATCACCACAAAAACAAACAAACAAACAAACAAACAAAACCCAGACA  300

seq1  AACCAATATGTACACATCTGTAAGCCTGAAATTCCAGCATTCAGGAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATATGTACACATCTGTAAGCCTGAAATTCCAGCATTCAGGAGGTG  350

seq1  GAGGCTGGTTGAAGACCAGGGACTACCAGTCCACCACCCTTAACTCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGTTGAAGACCAGGGACTACCAGTCCACCACCCTTAACTCCAAT  400

seq1  GTCCATCTGAATGGAGGAAGGGCACACAGATTGGGGGGGGGGGGGTG  447
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCTGAATGGAGGAAGGGCACACAGATTGGGGGGGGGGGGGTG  447