BAC Information

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BAC

Clone NameB6Ng01-158C15
Chromosome7 (Build37)
Map Location 21,309,709 - 21,310,923
singlet/doubletsinglet
Overlap geneEG381936
Upstream genePvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980
Downstream geneLOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574, LOC100043576, Gm1447, LOC100043006, LOC100043583, EG435953, LOC673902, EG667240, EG435951, Gm1446, LOC381937, LOC100043588, LOC670764, EG667215, LOC100043013, LOC621561, EG667199, EG621510, LOC667186, EG628475, LOC100043595, LOC100043596, LOC667358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158C15.bB6Ng01-158C15.g
ACCDH952193DH952194
length1,1951,099
definitionDH952193|Mus musculus domesticus DNA, BAC clone: B6Ng01-158C15, 5' end.DH952194|Mus musculus domesticus DNA, BAC clone: B6Ng01-158C15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagcccagggccagctcaagactagggcattgttgaaggccag
ggagcaaagttcgatttggcttagatattgagcaagtcattgcttggagg
cacctataataaaacaatactgaaagaaaacacacagatccattcgcaag
gacaagtttggagcatttattatacgggatgctatggttccaggagacta
agtttccgtgaaactctttgcctcaggactgcttccaggtttctaagcct
gtcaagtgagtcactactagagtagatgtagcagggtggctccacctcca
tcctgaggctggccaccaataatgggttcttctcaaatgacagcaacttt
ctgatggacaacctcttcttgtttgatgtcctcttcctgggtgaggttct
tttttccatgagggtctctttctctaagatatccccagaggaggatcctg
gaacacctacactcttaggtggctgcaggtatccacagagctcctcttgg
ggactgcaggaggacatattcctgtcaggcttctatgtgatgactctcat
ggtcctgacaatgctgtggcttggggtgcctgggaaatctgtgtggaagt
aggtggtaaacatgcctcactgcccctgatcatggggtgcctcatgattt
ggtggatggtgggcctcctgctgggattgatcatcagcagttcaatgatg
acattgagaatatcaatggaaacatgggaagggatgctgaagtttgcaga
gatgatctcctgctttaagtccacaaaatacctgccttggaaaggcaagt
tctcagataccatgaggaacaggaggactcctaaactccagatatctaca
ggggggccctcatatttctctgcttgcagagtttccggggcacagtaggg
cagcgtgccacagaaacctgccagcttttgtccaggaatcacttcagcag
ccaagccaaaatcacacagcttggcatttccctgtagtcgatcagatgtg
ctggccttatgtctctatggacatgtgatgtcatgcagtactgcaccgca
tgtactatctggcaacggcttcgagtctcgcctctccttaaagatcccac
tttgatgatgcgatcttgtagctctcctcctgagcaacttcatcacagaa
gtagtcctccttctctgcaacaatgaaagcttgaatgttaggatg
gaattcacttagtattatgaaagtgggaagggtctttattggggtttgga
tattgtaatggctattcctggtggtcatgttgactatatttggaataaac
caaaatccagaattggagggctcacctgtgatccagatcttgaggctgga
agacacaagtttctgacttggatcttggcatggagatcttgatgcaaagt
gactatgaaaagattaggctaaggcaagatagtacacacctttaatccca
ggagactaaagccaagagatctctgagttcaaggtcagcctgagataaat
ccctgttccagggactgtagtacacacctttaatcttggccacaccttct
gagggagacctacataaggacggtggaagaaggaagattcactcttttta
accacttgcatttacttgccagcatacctgttggaatctacttcaacaga
agaccagctgaaacaactagcctcgtgggactgagcaactactagattct
tggacttcccattcacagctgaccactgttgggaagttagactacagact
gtaagttgccataatgaattacttcaatatagaaagacattccatatgtt
ctgtaactctagagattccccaagcaatagagatatcaactatccaagaa
agggtcctgagtttgaacattggtccctagcatgtggccctgttggtcca
gttgccaaaaatcttgaaaatatagcctggcagatagagttggtcatagg
gggtagggttgtgagtcctgtgtccactctaacacagggatcggctgctt
gagaaggtaggacaaagggagtttgtgctagtcccatgccattgctgagt
gggtattgggctgtggggaactacagtctgaggtgcgtggcagtcacagc
tggcttgaaggtcctgggcctgagagagctagagccatggagttctcaaa
ttcttggacacttcagcacttctgcaatagagaagatctgagaacagatc
tgggcctgtggatggagctagcctgggcttgtgcgtgggaaggggagaac
ttggctggcctttgtgggaagatctttggcttgaaggagagccacactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_21309709_21310923
seq2: B6Ng01-158C15.b_44_1238

seq1  GAATTCCAAGCCCAGGGCCAGCTCAAGACTAGGGCATTGTTGAAGGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAGGGCCAGCTCAAGACTAGGGCATTGTTGAAGGCCAG  50

seq1  GGAGCAAAGTTCGATTTGGCTTAGATATTGAGCAAGTCATTGCTTGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAAGTTCGATTTGGCTTAGATATTGAGCAAGTCATTGCTTGGAGG  100

seq1  CACCTATAATAAAACAATACTGAAAGAAAACACACAGATCCATTCGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATAATAAAACAATACTGAAAGAAAACACACAGATCCATTCGCAAG  150

seq1  GACAAGTTTGGAGCATTTATTATACGGGATGCTATGGTTCCAGGAGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTTGGAGCATTTATTATACGGGATGCTATGGTTCCAGGAGACTA  200

seq1  AGTTTCCGTGAAACTCTTTGCCTCAGGACTGCTTCCAGGTTTCTAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCGTGAAACTCTTTGCCTCAGGACTGCTTCCAGGTTTCTAAGCCT  250

seq1  GTCAAGTGAGTCACTACTAGAGTAGATGTAGCAGGGTGGCTCCACCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTGAGTCACTACTAGAGTAGATGTAGCAGGGTGGCTCCACCTCCA  300

seq1  TCCTGAGGCTGGCCACCAATAATGGGTTCTTCTCAAATGACAGCAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGGCTGGCCACCAATAATGGGTTCTTCTCAAATGACAGCAACTTT  350

seq1  CTGATGGACAACCTCTTCTTGTTTGATGTCCTCTTCCTGGGTGAGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGACAACCTCTTCTTGTTTGATGTCCTCTTCCTGGGTGAGGTTCT  400

seq1  TTTTTCCATGAGGGTCTCTTTCTCTAAGATATCCCCAGAGGAGGATCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATGAGGGTCTCTTTCTCTAAGATATCCCCAGAGGAGGATCCTG  450

seq1  GAACACCTACACTCTTAGGTGGCTGCAGGTATCCACAGAGCTCCTCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCTACACTCTTAGGTGGCTGCAGGTATCCACAGAGCTCCTCTTGG  500

seq1  GGACTGCAGGAGGACATATTCCTGTCAGGCTTCTATGTGATGACTCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCAGGAGGACATATTCCTGTCAGGCTTCTATGTGATGACTCTCAT  550

seq1  GGTCCTGACAATGCTGTGGCTTGGGGTGCCTGGGAAATCTGTGTGGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGACAATGCTGTGGCTTGGGGTGCCTGGGAAATCTGTGTGGAAGT  600

seq1  AGGTGGTAAACATGCCTCACTGCCCCTGATCATGGGGTGCCTCATGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTAAACATGCCTCACTGCCCCTGATCATGGGGTGCCTCATGATTT  650

seq1  GGTGGATGGTGGGCCTCCTGCTGGGATTGATCATCAGCAGTTCAATGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATGGTGGGCCTCCTGCTGGGATTGATCATCAGCAGTTCAATGATG  700

seq1  ACATTGAGAATATCAATGGAAACATGGGAAGGGATGCTGAAGTTTGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGAATATCAATGGAAACATGGGAAGGGATGCTGAAGTTTGCAGA  750

seq1  GATGATCTCCTGCTTTAAGTCCACAAAATACCTGCCTTGGAAAGGCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTCCTGCTTTAAGTCCACAAAATACCTGCCTTGGAAAGGCAAGT  800

seq1  TCCCAGATACCATGAGGAACAGGAGGACCCCTAAACTCCAGATATCTACA  850
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTCAGATACCATGAGGAACAGGAGGACTCCTAAACTCCAGATATCTACA  850

seq1  GGGGGGCCCTCATATTTCTCTGCTTGCAAGAG-TTCCGGGGCACAGTAGG  899
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  GGGGGGCCCTCATATTTCTCTGCTTGC-AGAGTTTCCGGGGCACAGTAGG  899

seq1  GCAGCGTGCCACAGAAACCTGCCAGCTTTTGTCCAGGAATCACTTCAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGTGCCACAGAAACCTGCCAGCTTTTGTCCAGGAATCACTTCAGCA  949

seq1  GCCAAGCCAAAATCACACAGCTTGGCATTTCCCCTGTAGTCGATCAAGAT  999
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  GCCAAGCCAAAATCACACAGCTTGGCATTT-CCCTGTAGTCGATC-AGAT  997

seq1  GTTGCTGGCCTTTATGTCTCTATGGACAATGTGATGGTCATGGCAGTACT  1049
      | |||||||| |||||||||||||||| ||||||| ||||| ||||||||
seq2  G-TGCTGGCC-TTATGTCTCTATGGAC-ATGTGAT-GTCAT-GCAGTACT  1042

seq1  GCACCGCATGTACTATCTGGGCAAACAGCCTTCGAGTCTCG-CTCTCCTC  1098
      |||||||||||||||||| |||||   | |||||||||||| ||||||| 
seq2  GCACCGCATGTACTATCT-GGCAA--CGGCTTCGAGTCTCGCCTCTCCT-  1088

seq1  TAAAGACCCCACTTTGATGATGCGATCTTGTAGCTCTCCCTCTGAGGCAT  1148
      |||||| ||||||||||||||||||||||||||||||||  |||| ||| 
seq2  TAAAGATCCCACTTTGATGATGCGATCTTGTAGCTCTCCTCCTGA-GCA-  1136

seq1  ACTCCATCACCAGGTAGGTAGTCTCTCTTCTCTGGACCACATGAAACAGC  1198
      ||| ||||| |||  | ||||||   |||||||| | || |||||  |||
seq2  ACTTCATCA-CAG--AAGTAGTCCTCCTTCTCTGCAACA-ATGAA--AGC  1180

seq1  TTGATAATGTTAGGATG  1215
      |||  ||||||||||||
seq2  TTG--AATGTTAGGATG  1195