BAC Information

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BAC

Clone NameB6Ng01-158D20
Chromosome7 (Build37)17 (Build37)
Map Location 7,385,767 - 7,386,52382,000,457 - 82,001,351
singlet/doubletsingletsinglet
Overlap geneVmn2r-ps36
Upstream geneOlfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
Downstream geneV2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158D20.bB6Ng01-158D20.g
ACCDH952248DH952249
length1,0131,113
definitionDH952248|Mus musculus domesticus DNA, BAC clone: B6Ng01-158D20, 5' end.DH952249|Mus musculus domesticus DNA, BAC clone: B6Ng01-158D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,385,767 - 7,386,523)(82,000,457 - 82,001,351)
sequence
gaattcctggtctttcctgaacttttagcgcgaatgggtgttggatcttg
ccgatgctgaagggggagtgtgggtgtgatcttggcttttttggctttaa
cttgatgtctttgcagcatcacatcgtggcattgacgcatgattaacccc
cccggaatccctggaataaaacctccttggatgtgatggatgattgctgg
aggtagttcttgcatcccgctcttcagaattccatcgacgagtcctgcag
cgatcttcatcaaaaaattgggccctgcactctctatctttgttggatct
ttctgtggtttactgagcaagtaatagaggcttcctgaatgatgtgggaa
gacaacttcctacttctaacttgtgaacaaacttgtgaagaactggaact
gcatcttctaaggaggcctgatctaactcagaaaccaacttctttggtcc
tgggcttactttggatggcagactgtatacaactgcttctatttcctctt
gggatatgggactggactcttggtcctctatgtcctgactggatgttgtg
ccacgcacttcttattgaggaataacacttgatgggtacggaacatagtt
atttttcaaagtaactgctgaccaaggatctgagtgtgaaaagtgatggt
cactgatctggggcatagtctatcctttgtgacaccatatgacaaaattt
ccagggtgagtgcaaatgaccctaatgacttcagctgattcaccttcaat
cctagtgatatattgaggtatgtgatatgtgtgtgtgtgtattctttgaa
tagttcttcttgtttccacttggttgatttcaccctgagtttgattattt
cctgctgtctactcctcttgggtgaatttacttccttttttactagagct
tttagatggtgttgtcaagctgctagtatgtgctctctctgtttcttcat
ggaggcactcagagctatgagtttttctcttagaaatgctttcattgtgt
ctaaaggtttggg
gaattcacggttttaacatacctcatgcatctagggcactaaagctgttt
ccaactgctgcttctgtccttggaggaatttacctgcagactagggagtg
aaagaaactgacccattctttaaattggctttgtcaaggaacaacaaaat
aaatgtcgatgctatcacttctttcatatgacctcttatcctgcttttct
tatttctaggatgtgaagagagagtgagagaaaaagagagagaattttag
agatttcccgagagagtgaggtaatccagagtctgtccagtaacaatgct
aactcagaatattcacttgatcgcaaaataaaaaatctgggtcaaaagga
actaaacgaagaggttctcccagctccatgtccaatgcatttatttttat
ttttggcttagttagtcatcggaagacagaacccagaaaaggtttactca
gttaaaaggaagcatgtgacttggatactgagctggattttctgtatgtg
cacgtctataaaacatttggataatccgtgcactatcgaaccgtgaatgc
ctcatagagagcacgttgagacgttgtccttaccaccagtgtccatcatg
tttttttaccagtgactcagtgaagcacaggaatgaatccttaatcagat
ctgcacgtaagaaacgttggggggaaagtaagtgtgtatgatgggtgaaa
acttcaaaatgcccttcagaggctgatctttaagcaaagaagtaaggttt
tttccctcttgatatcttaaagcatatttttaattaaaatatgattgtca
cttcccttttcccttttcctcctccagacccctcccatgtgccatccatc
tagttcctctcacccccatcactgcccctcaatggatgaccgatagatgt
acatagatagaactacaacttgctgagtccattttgttgctatgtgatta
tggctttcttgcaatattttttttccttgcaagaacagaatttcagatgg
aaacagcaaatgagttgaaactggacttgtggcttcatgacgagaaatga
ttgagttaccaatatggcttgaatcatcagtaagggtccaaaggacaaat
aactctctattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_7385767_7386523
seq2: B6Ng01-158D20.b_322_1054 (reverse)

seq1  CCCAAACTTATGGGACACAATGCAAGCATTTCTAAGAGGTAAACTCATAG  50
      ||||||| | |  ||||||||| |||||||||||||||  ||||||||||
seq2  CCCAAACCT-TTAGACACAATGAAAGCATTTCTAAGAGAAAAACTCATAG  49

seq1  CTCTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTG  100
      |||||||||||||||  |||||||  ||||||||||| ||||||||||||
seq2  CTCTGAGTGCCTCCATGAAGAAAC-AGAGAGAGCACATACTAGCAGCTTG  98

seq1  ACAACA-TATGTAAAAGCTCTAGAAAAAAAGCAAGCAAATTCACCCAAGA  149
      ||||||  || |||||||||||| ||||||| ||| ||||||||||||||
seq2  ACAACACCATCTAAAAGCTCTAGTAAAAAAGGAAGTAAATTCACCCAAGA  148

seq1  GGAGTAGACGGCAGGAAATAATCAAACTCAGAGGTGAAATCAACCAAGTG  199
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  GGAGTAGACAGCAGGAAATAATCAAACTCAG-GGTGAAATCAACCAAGTG  197

seq1  GAAACAAGAAGAACTATTCAACGAATCAACA-AAATGAGTACCTGGTTCT  248
      ||||||||||||||||||||| ||||  ||| | |    || |   | | 
seq2  GAAACAAGAAGAACTATTCAAAGAATACACACACACACATATCACATAC-  246

seq1  TTGAGAAAATCCACAAGAT---AGATAAACTCTTATCCAGACTCACTAGA  295
       | |  | |||   | |||   || | ||   | | |   | ||| ||| 
seq2  CTCAATATATCACTAGGATTGAAGGTGAA---TCAGCTGAAGTCATTAG-  292

seq1  GGGCACAGGGACAGCATCCT---AATTAACAAAATCAGA-AGTG----AA  337
      || ||   | ||  || |||   ||||       ||| |  |||    ||
seq2  GGTCATTTGCAC-TCACCCTGGAAATT----TTGTCATATGGTGTCACAA  337

seq1  AAGAGAGACATAACAACAGATCCTGAAGAAATAAAAAACACCATCAGATT  387
      | || ||||    |  ||||||    |  |  |     |||  |||||| 
seq2  AGGATAGACTATGCCCCAGATCAGTGACCATCACTTTTCACACTCAGATC  387

seq1  CTTCTACAAAATGTTATACTCAACAA-AACTGGAAAACGTGGGCGGAATG  436
      |||   ||  | ||||   | || || ||||      |||   |   | |
seq2  CTTGGTCAGCA-GTTACTTTGAAAAATAACTATGTTCCGTACCCATCAAG  436

seq1  ---GACACATTTATAGACAGTTACCATGTACCAAAGTTAAACCAGGATCA  483
          |  | |  |||   |||   | ||   |||     | ||||  |||
seq2  TGTTATTCCTCAATAAGAAGT--GCGTGGCACAA----CATCCAG--TCA  478

seq1  GGTCA---ATGATCTAAA---CAGTCCCATATCCCGCAAAGAAATAGAAG  527
      || ||   | || | | |   ||||||||||||||   | ||||||||||
seq2  GGACATAGAGGACCAAGAGTCCAGTCCCATATCCCAAGAGGAAATAGAAG  528

seq1  CAGTCATTAATAGTCTCCCAACCAAAAAAAAAAAAAAAAAAAAAAAAAAA  577
      ||||  |  | ||||| ||| ||                      |||  
seq2  CAGTTGTATACAGTCTGCCATCC----------------------AAAGT  556

seq1  AAGCCCAGGA-AGAAGAAG--GGTTTAGTGCAGAGTTCTATGAGATCTTC  624
      ||||||||||   ||||||  |||||    | |||||  || ||  || |
seq2  AAGCCCAGGACCAAAGAAGTTGGTTT----CTGAGTTAGATCAGGCCTCC  602

seq1  AAAGAAGACCTAATTCTAGTTCTGCATAAACTATTCCACAAAATAGAAGT  674
        ||||||   | ||| |||||| || ||  |  | |||||  |||||||
seq2  TTAGAAGATGCAGTTCCAGTTCTTCACAAGTTTGTTCACAAGTTAGAAGT  652

seq1  AGAAGGTACTCTAGCCAACTAATTCTATGAAGCCACAATTACTCTGATAC  724
      || | ||  |||  |||  | |||| | |||||| | |||||| || |  
seq2  AGGAAGTTGTCTTCCCACATCATTC-AGGAAGCCTCTATTACT-TGCTCA  700

seq1  CTAAACCACAGAAAGATCCAACAAAGATAGAGA  757
       ||||||||||||||||||||||||||||||||
seq2  GTAAACCACAGAAAGATCCAACAAAGATAGAGA  733

seq1: chr17_82000457_82001351
seq2: B6Ng01-158D20.g_310_1180 (reverse)

seq1  TTAATAGAGTGGTA-TTGTCCTTTTGGGGCACTATACTTGAATGATTCCA  49
      ||||||||| | || |||||||||  || | || ||||   |||||| ||
seq2  TTAATAGAGAGTTATTTGTCCTTT--GGACCCT-TACT--GATGATT-CA  44

seq1  AGCCATACTCGTAACCTCTGATTCATCTTCTCTGTTCATGAGGCCCACAA  99
      ||||||| | ||||   || | |||| |||||   |||||| | ||||||
seq2  AGCCATATTGGTAA---CTCAATCAT-TTCTC--GTCATGAAG-CCACAA  87

seq1  GTCCCCGTTTCCAACCTCAATCTGCTTGTTTCCATCCTGGAAATCTGGTT  149
      || || |||||  | ||| || ||| ||||||||| ||| || ||| |||
seq2  GT-CCAGTTTC--AACTC-ATTTGC-TGTTTCCAT-CTGAAATTCT-GTT  130

seq1  CTTGCAAGAGAAAAAAAATATTTGCAAAGACAGGCCATATACACATAAGC  199
      |||||||| ||||||||||| |||| |||| | ||||||  ||||| |||
seq2  CTTGCAAG-GAAAAAAAATA-TTGC-AAGA-AAGCCATAATCACAT-AGC  175

seq1  AACAAAAATGGACTCAGCAGGTTGTAGTTCTATCTTTGTACATCTATCGG  249
      ||| ||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  AAC-AAAATGGACTCAGCAAGTTGTAGTTCTATCTATGTACATCTATCGG  224

seq1  TCATCCATTTGAGGGGCAGTGATGGGGGTGGGAGGAACTAGATGGATGGC  299
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TCATCCA-TTGAGGGGCAGTGATGGGGGTGAGAGGAACTAGATGGATGGC  273

seq1  ACATGGGAGGGGTCTGGAGGAGG-AAAGGGAAAAGGGAAGTGACAATCAT  348
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACATGGGAGGGGTCTGGAGGAGGAAAAGGGAAAAGGGAAGTGACAATCAT  323

seq1  ATTTTAATT-AAAATATGCTTTAAGATATCAAGAGGGAAAAAACCTTACT  397
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTAAAAATATGCTTTAAGATATCAAGAGGGAAAAAACCTTACT  373

seq1  TCTTTGCTT-AAGATCAGCCTCTGAAGGGCATTTTGAAGTTTTCACCCAT  446
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTTAAAGATCAGCCTCTGAAGGGCATTTTGAAGTTTTCACCCAT  423

seq1  CATACACACTTACTTTCCCCCCAACGTTTCTTACGTGCAGATCTGATTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACTTACTTTCCCCCCAACGTTTCTTACGTGCAGATCTGATTAA  473

seq1  GGATTCATTCCTGTGCTTCACTGAGTCACTGGTAAAAAAACATGATGGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATTCCTGTGCTTCACTGAGTCACTGGTAAAAAAACATGATGGAC  523

seq1  ACTGGTGGTAAGGACAACGTCTCAACGTGCTCTCTATGAGGCATTCACGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGTAAGGACAACGTCTCAACGTGCTCTCTATGAGGCATTCACGG  573

seq1  TTCGATAGTGCACGGATTATCCAAATGTTTTATAGACGTGCACATACAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATAGTGCACGGATTATCCAAATGTTTTATAGACGTGCACATACAGA  623

seq1  AAATCCAGCTCAGTATCCAAGTCACATGCTTCCTTTTAACTGAGTAAACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAGCTCAGTATCCAAGTCACATGCTTCCTTTTAACTGAGTAAACC  673

seq1  TTTTCTGGGTTCTGTCTTCCGATGACTAACTAAGCCAAAAATAAAAATAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGGTTCTGTCTTCCGATGACTAACTAAGCCAAAAATAAAAATAA  723

seq1  ATGCATTGGACATGGAGCTGGGAGAACCTCTTCGTTTAGTTCCTTTTGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGGACATGGAGCTGGGAGAACCTCTTCGTTTAGTTCCTTTTGAC  773

seq1  CCAGATTTTTTATTTTGCGATCAAGTGAATATTCTGAGTTAGCATTGTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTTTTATTTTGCGATCAAGTGAATATTCTGAGTTAGCATTGTTA  823

seq1  CTGGACAGACTCTGGATTACCTCATTTTTATTGGGAAATAATTAAAATT  895
      ||||||||||||||||||||||||  | | | |||||||   |||||||
seq2  CTGGACAGACTCTGGATTACCTCA-CTCTCTCGGGAAATCTCTAAAATT  871