BAC Information

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BAC

Clone NameB6Ng01-158I21
Chromosome7 (Build37)
Map Location 24,768,659 - 24,769,827
singlet/doubletsinglet
Overlap geneV1rd20
Upstream geneLOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575
Downstream geneV1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158I21.bB6Ng01-158I21.g
ACCDH952472DH952473
length1,2271,164
definitionDH952472|Mus musculus domesticus DNA, BAC clone: B6Ng01-158I21, 5' end.DH952473|Mus musculus domesticus DNA, BAC clone: B6Ng01-158I21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttctttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgattcgca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtatgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcaaattgctccttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttatttcttcagagacttgaatgttttatcatac
agatctttcacttccttagttagagtcacgccgagatatttatattattt
gtgactattgaaaggtgtcgtttccctaatttcttttctcagcctgttta
ttttttgtgtagagaaagggcaatgacttggttgaggtaaattttataat
ccagctacttccccgaagctgtttatcaggttacggagtctcttgtggga
atttaagggtccctattaatacaatcaatacaactcgcaaagagaatttg
actcctcctcaatggaatcctggatccttgtggcatgctcgccaactcaa
gacagttgaaagagtggaataggagag
gaattctgatgaaaaatctgatggacccttatttatcattgattaagtta
ttttattgattaagttacatcccatttgcagcatcccctccttcctaatt
gtattgaactctgatgatggaatcacatacaaaaaggagcctctttcctc
tctttatccatatgcaaagcccatggtgtgtccaaatgtgtgttattgtg
aaggttattcgccaacttgatcatatagatgtaggtgcaatacaaaattt
atcttggtgcaggagttatttgataagtaaaaaatatttttctgagttac
tgtccattcattgttttccaggcaaagttcctgtttgtgatagaaaagtg
tctcacttatcaagagaagaaattatcccaaatcaattgataagcatgga
caatagaacagactcctgatgatagcagtgtcctgcctaatcatcactct
agggttgtataaagccctctccatgtctgctcatgataaatccctgaaaa
ccaccgaggaagtggctcttcagattctcttgctttgccagtttggggtt
gggacttttgccaatgtatttctctttgtccataatttctttccaatcct
gactggttctaaacagaggcccagacaggtgattttaagccacatagctg
tggccaatgccttgactctcttcatcactacatttccaaacaacatggct
tttgctccaagaagtcctcaaaatgacctcaaatgtaaattggaattctt
cattcgcatggtggcaagaagcacaggcttatgttccacctgtgtcttga
gtatccatcaatttctcactcttgttcctgttaatagaggaaaacttata
ctcagaacaagtgtcccgaatttggtgagttattcttgttacagttgttg
gttcttcagtgtcttaaataacatctacattccaattaagtcactggtcc
acagataacagacagtaaaaatgactccaaaagcaagtgttctgttccac
ttcttggatttaatgtgggtattggcttcttgcaattggcccatgatgcc
acattcatgagcatcatggtcctggaccgagtgcttctggtactttctct
catagacattcgcccgcgaatgcagtactatttctctctcatcgacacag
aagccagcctgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24768659_24769827
seq2: B6Ng01-158I21.g_69_1232

seq1  GAATTCTGATGAAAAATCTGATGGACCCTTATTTATCATTGATTAAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGAAAAATCTGATGGACCCTTATTTATCATTGATTAAGTTA  50

seq1  TTTTATTGATTAAGTTACATCCCATTTGCAGCATCCCCTCCTTCCTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGATTAAGTTACATCCCATTTGCAGCATCCCCTCCTTCCTAATT  100

seq1  GTATTGAACTCTGATGATGGAATCACATACAAAAAGGAGCCTCTTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAACTCTGATGATGGAATCACATACAAAAAGGAGCCTCTTTCCTC  150

seq1  TCTTTATCCATATGCAAAGCCCATGGTGTGTCCAAATGTGTGTTATTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCCATATGCAAAGCCCATGGTGTGTCCAAATGTGTGTTATTGTG  200

seq1  AAGGTTATTCGCCAACTTGATCATATAGATGTAGGTGCAATACAAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATTCGCCAACTTGATCATATAGATGTAGGTGCAATACAAAATTT  250

seq1  ATCTTGGTGCAGGAGTTATTTGATAAGTAAAAAATATTTTTCTGAGTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTGCAGGAGTTATTTGATAAGTAAAAAATATTTTTCTGAGTTAC  300

seq1  TGTCCATTCATTGTTTTCCAGGCAAAGTTCCTGTTTGTGATAGAAAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTCATTGTTTTCCAGGCAAAGTTCCTGTTTGTGATAGAAAAGTG  350

seq1  TCTCACTTATCAAGAGAAGAAATTATCCCAAATCAATTGATAAGCATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTATCAAGAGAAGAAATTATCCCAAATCAATTGATAAGCATGGA  400

seq1  CAATAGAACAGACTCCTGATGATAGCAGTGTCCTGCCTAATCATCACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAACAGACTCCTGATGATAGCAGTGTCCTGCCTAATCATCACTCT  450

seq1  AGGGTTGTATAAAGCCCTCTCCATGTCTGCTCATGATAAATCCCTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGTATAAAGCCCTCTCCATGTCTGCTCATGATAAATCCCTGAAAA  500

seq1  CCACCGAGGAAGTGGCTCTTCAGATTCTCTTGCTTTGCCAGTTTGGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCGAGGAAGTGGCTCTTCAGATTCTCTTGCTTTGCCAGTTTGGGGTT  550

seq1  GGGACTTTTGCCAATGTATTTCTCTTTGTCCATAATTTCTTTCCAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTTTGCCAATGTATTTCTCTTTGTCCATAATTTCTTTCCAATCCT  600

seq1  GACTGGTTCTAAACAGAGGCCCAGACAGGTGATTTTAAGCCACATAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTTCTAAACAGAGGCCCAGACAGGTGATTTTAAGCCACATAGCTG  650

seq1  TGGCCAATGCCTTGACTCTCTTCATCACTACATTTCCAAACAACATGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAATGCCTTGACTCTCTTCATCACTACATTTCCAAACAACATGGCT  700

seq1  TTTGCTCCAAGAAGTCCTCAAAATGACCTCAAATGTAAATTGGAATTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCAAGAAGTCCTCAAAATGACCTCAAATGTAAATTGGAATTCTT  750

seq1  CATTCGCATGGTGGCAAGAAGCACAGGCTTATGTTCCACCTGTGTCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGCATGGTGGCAAGAAGCACAGGCTTATGTTCCACCTGTGTCTTGA  800

seq1  GTATCCATCAATTTCTCACTCTTGTTCCTGTTAATAGAGGAAAACTTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATCAATTTCTCACTCTTGTTCCTGTTAATAGAGGAAAACTTATA  850

seq1  CTCAGAACAAGTGTCCCGAATTTGGTGAGTTATTCTTGTTACAGTTGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACAAGTGTCCCGAATTTGGTGAGTTATTCTTGTTACAGTTGTTG  900

seq1  GTTCTTCAGTGTCTTAAATAACATCTACATTCCAATTAAGGTCACTGGTC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTCTTCAGTGTCTTAAATAACATCTACATTCCAATTAA-GTCACTGGTC  949

seq1  CACAGATAACAGACAGTAAAAATGACTCCAAAAGCAAGTTGTTCTGTTCC  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACAGATAACAGACAGTAAAAATGACTCCAAAAGCAAG-TGTTCTGTTCC  998

seq1  ACTTC-TGGATTTAATGTGGGTATTGTCTTCTTGCGATTTGCCCATGATG  1049
      ||||| |||||||||||||||||||| |||||||| ||| ||||||||||
seq2  ACTTCTTGGATTTAATGTGGGTATTGGCTTCTTGCAATTGGCCCATGATG  1048

seq1  CCACATTCATGAGCATCATGGT-CTGGACC-AGTGTCTCCATGGTACTTC  1097
      |||||||||||||||||||||| ||||||| ||||  ||  |||||||| 
seq2  CCACATTCATGAGCATCATGGTCCTGGACCGAGTGCTTC--TGGTACTT-  1095

seq1  TCCTCCATAGACA-TCGCCAGCGAATGCAGTACATATTCACTCTCAATCA  1146
      ||   |||||||| ||||| |||||||||||||   ||| ||||| ||| 
seq2  TCTCTCATAGACATTCGCCCGCGAATGCAGTACTATTTCTCTCTC-ATC-  1143

seq1  GGACCACAGAAGCCAAGCTGAGA  1169
       || |||||||||||  ||||||
seq2  -GA-CACAGAAGCCAGCCTGAGA  1164