BAC Information

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BAC

Clone NameB6Ng01-158L02
Chromosome7 (Build37)
Map Location 26,000,002 - 26,183,301
singlet/doubletdoublet
Overlap geneDedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe
Upstream geneZfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2
Downstream geneBC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158L02.bB6Ng01-158L02.g
ACCDH952575DH952576
length1,057655
definitionDH952575|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L02, 5' end.DH952576|Mus musculus domesticus DNA, BAC clone: B6Ng01-158L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,182,237 - 26,183,301)(26,000,002 - 26,000,653)
sequence
gaattccagcaggaacagggaatccaacaatccgctctgcttcagaaatt
tctcaccccattcgccttccctgcaccacagcaatcatccccaagccaga
aagtacacttggatcaacaggaagccatctcccctaatggacctggggca
ggaaaagtgtatacaactccacaggaaccacaactcggagaagaacatat
ggggatgacaaaatctggaccagcagaaccacctccagctacagaagcag
agactacatctacagcccaggctgtatctggaccggacaagaaaccctct
acccaaactaacttggtatcccaagaggggcctgaacagtcagaccctac
agcccagcaaacacctctagtccaaggagccaagtctaagcagggatctt
tgactgagtcagggtttctaacaaggctgcatgacctatccatacagcag
acatctccagagtggaagtcattttttgactgtgttaccgtgtctgacat
agagaaatgcttgagttcatcctcaaagtcaaattctccaaagccaagtt
acggaacagcgatcccggaaatggcactgctctccaaaaagaaacctgag
tttgaaaagctgtcaggatatggcggtaaattaccacacgggaagaagac
tagcatccagaaacacaaacactactgggacacaggtgagtctgaacctg
gaagactagacagagccttcccgggccagtcatttagttgtgctaagtat
tttctgtatctgcgatcataacgctcaggtcatctctgaaggattctgta
aaataaagcgcacccctcatccccagcccagtctgtcgagaaggaatgaa
cgctgaggtatataaacaatgagggtcttacaaacggccctacagtttgg
gaacagcaacacgggagtaaaacaggtttgtctccctttacaccgggctg
cccctacaaagagttgaggaaatcaagtgaagtgggaagagctctactca
gatcagtcaagaatcaccctcttcctgcattcatttggagaaagaaggaa
gaaggga
gaattccatgcggaggaggcatagactggggcttccccagggcaagttgg
ctagctggactaaccttattagaaagccctaggttcagccagagaccctg
tctcagcgaacagagggaattaggaaaacacctggtatcaacttctgcat
acatgaacacaggtgaatgtgtacctacacacacacacacaagcccacca
cataccaatacacacaccccaaagaagaagtctcttcccaatgtataaat
ctggccaatgtgaccataagtgcctgaccgcacttccctattcatggtga
aaacttcagcacaggcatggtgcccattgtagctacctggatgctggggg
gatgggggtggggaccaagtagcaggacaccatcatgtgacaccggcatg
tgacaaccagaaagactctcagaacattgctcacactgaccaaccctgta
gggtggacaataccagaagactctgggctggggaggaggccagcacacac
agttgtggtttggtggtatagaggcagtcagcatactggaggtccagcct
cacacagagagagggaggaagatggctctgtctgtcaagaaaaaaaagtt
cctactctactgatgttacagaagtaaatactgaacgccagttgggcaca
ggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_26182237_26183301
seq2: B6Ng01-158L02.b_45_1101 (reverse)

seq1  TCCCT--TTCCTTC-----CCAAATGAATGCAGGGAAGAGGGTGGTTTCT  43
      |||||  |||||||     ||||||||||||| ||||||||||| ||   
seq2  TCCCTTCTTCCTTCTTTCTCCAAATGAATGCA-GGAAGAGGGTGATT--C  47

seq1  TTGACCTGATTCCTGAGTTAGAGCTCTTTCCCACTTCACTTTGATTTCCT  93
      |||| |||||  ||||| |||||||| |||||||||||| ||||||||| 
seq2  TTGA-CTGAT--CTGAG-TAGAGCTC-TTCCCACTTCAC-TTGATTTCC-  90

seq1  TCAACTCTTTTGTAGGGGGCAGCCCGGTGTAAAGGGAGACAAACCCTGTT  143
      ||||||| |||||| |||||||||||||||||||||||||||| |||| |
seq2  TCAACTC-TTTGTA-GGGGCAGCCCGGTGTAAAGGGAGACAAA-CCTG-T  136

seq1  TTTACTCCCGTGTTTGCTGTTCCCAAACTGTAGGGCCGTTTGTAAGACCC  193
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCCGTG-TTGCTGTTCCCAAACTGTAGGGCCGTTTGTAAGACCC  185

seq1  TCATTGTTTATATACCTCAGCGTTCATTCCTTCTCGACAGACTGGGCTGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTTATATACCTCAGCGTTCATTCCTTCTCGACAGACTGGGCTGG  235

seq1  GGATGAGGGGTGCGCTTTATTTTACAGAATCCTTCAGAGATGACCTGAGC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGGGGTGCGCTTTATTTTACAGAATCCTTCAGAGATGACCTGAGC  285

seq1  GTTATGATCGCAGATACAGAAAATACTTAGCACAACTAAATGACTGGCCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGATCGCAGATACAGAAAATACTTAGCACAACTAAATGACTGGCCC  335

seq1  GGGAAGGCTCTGTCTAGTCTTCCAGGTTCAGACTCACCTGTGTCCCAGTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCTCTGTCTAGTCTTCCAGGTTCAGACTCACCTGTGTCCCAGTA  385

seq1  GTGTTTGTGTTTCTGGATGCTAGTCTTCTTCCCGTGTGGTAATTTACCGC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTTTCTGGATGCTAGTCTTCTTCCCGTGTGGTAATTTACCGC  435

seq1  CATATCCTGACAGCTTTTCAAACTCAGGTTTCTTTTTGGAGAGCAGTGCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCTGACAGCTTTTCAAACTCAGGTTTCTTTTTGGAGAGCAGTGCC  485

seq1  ATTTCCGGGATCGCTGTTCCGTAACTTGGCTTTGGAGAATTTGACTTTGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGGGATCGCTGTTCCGTAACTTGGCTTTGGAGAATTTGACTTTGA  535

seq1  GGATGAACTCAAGCATTTCTCTATGTCAGACACGGTAACACAGTCAAAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAACTCAAGCATTTCTCTATGTCAGACACGGTAACACAGTCAAAAA  585

seq1  ATGACTTCCACTCTGGAGATGTCTGCTGTATGGATAGGTCATGCAGCCTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCCACTCTGGAGATGTCTGCTGTATGGATAGGTCATGCAGCCTT  635

seq1  GTTAGAAACCCTGACTCAGTCAAAGATCCCTGCTTAGACTTGGCTCCTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAACCCTGACTCAGTCAAAGATCCCTGCTTAGACTTGGCTCCTTG  685

seq1  GACTAGAGGTGTTTGCTGGGCTGTAGGGTCTGACTGTTCAGGCCCCTCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAGGTGTTTGCTGGGCTGTAGGGTCTGACTGTTCAGGCCCCTCTT  735

seq1  GGGATACCAAGTTAGTTTGGGTAGAGGGTTTCTTGTCCGGTCCAGATACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACCAAGTTAGTTTGGGTAGAGGGTTTCTTGTCCGGTCCAGATACA  785

seq1  GCCTGGGCTGTAGATGTAGTCTCTGCTTCTGTAGCTGGAGGTGGTTCTGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGCTGTAGATGTAGTCTCTGCTTCTGTAGCTGGAGGTGGTTCTGC  835

seq1  TGGTCCAGATTTTGTCATCCCCATATGTTCTTCTCCGAGTTGTGGTTCCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAGATTTTGTCATCCCCATATGTTCTTCTCCGAGTTGTGGTTCCT  885

seq1  GTGGAGTTGTATACACTTTTCCTGCCCCAGGTCCATTAGGGGAGATGGCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTGTATACACTTTTCCTGCCCCAGGTCCATTAGGGGAGATGGCT  935

seq1  TCCTGTTGATCCAAGTGTACTTTCTGGCTTGGGGATGATTGCTGTGGTGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGATCCAAGTGTACTTTCTGGCTTGGGGATGATTGCTGTGGTGC  985

seq1  AGGGAAGGCGAATGGGGTGAGAAATTTCTGAAGCAGAGCGGATTGTTGGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGCGAATGGGGTGAGAAATTTCTGAAGCAGAGCGGATTGTTGGA  1035

seq1  TTCCCTGTTCCTGCTGGAATTC  1065
      ||||||||||||||||||||||
seq2  TTCCCTGTTCCTGCTGGAATTC  1057

seq1: chr7_26000002_26000653
seq2: B6Ng01-158L02.g_69_722

seq1  GAATTCCATGCGGAGGAGGCATAGACTGGGGCTTCCCCAGGGCAAGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCGGAGGAGGCATAGACTGGGGCTTCCCCAGGGCAAGTTGG  50

seq1  CTAGCTGGACTAACCTTATTAGAAAGCCCTAGGTTCAGCCAGAGACCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGGACTAACCTTATTAGAAAGCCCTAGGTTCAGCCAGAGACCCTG  100

seq1  TCTCAGCGAACAGAGGGAATTAGGAAAACACCTGGTATCAACTTCTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCGAACAGAGGGAATTAGGAAAACACCTGGTATCAACTTCTGCAT  150

seq1  ACATGAACACAGGTGAATGTGTACCTACACACACACACACAAGCCCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAACACAGGTGAATGTGTACCTACACACACACACACAAGCCCACCA  200

seq1  CATACCAATACACACACCCCAAAGAAGAAGTCTCTTCCCAATGTATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAATACACACACCCCAAAGAAGAAGTCTCTTCCCAATGTATAAAT  250

seq1  CTGGCCAATGTGACCATAAGTGCCTGACCGCACTTCCCTATTCATGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAATGTGACCATAAGTGCCTGACCGCACTTCCCTATTCATGGTGA  300

seq1  AAACTTCAGCACAGGCATGGTGCCCATTGTAGCTACCTGGATGCTGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAGCACAGGCATGGTGCCCATTGTAGCTACCTGGATGCTGGGGG  350

seq1  GATGGGGGTGGGGACCAAGTAGCAGGACACCATCATGTGACACCGGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGTGGGGACCAAGTAGCAGGACACCATCATGTGACACCGGCATG  400

seq1  TGACAACCAGAAAGACTCTCAGAACATTGCTCACACTGACCAACCCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACCAGAAAGACTCTCAGAACATTGCTCACACTGACCAACCCTGTA  450

seq1  GGGTGGACAATACCAGAAGACTCTGGGCTGGGGAGGAGGCCAGCACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGACAATACCAGAAGACTCTGGGCTGGGGAGGAGGCCAGCACACAC  500

seq1  AGTTGTGGTTTGGTGGTATAGAGGCAGTCAGCATACTGGAGGTCCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTTGTGGTTTGGTGGTATAGAGGCAGTCAGCATACTGGAGGTCCAGCCT  550

seq1  CACACAGAGAGAGGGAGGAAGATGGCTCTGTCTGTCAAG-AAAAAAAGTT  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACACAGAGAGAGGGAGGAAGATGGCTCTGTCTGTCAAGAAAAAAAAGTT  600

seq1  CCTACTCTACAGAGGTTACAGAGGTAAATACTGAACGCCAGTT-GGCACA  648
      |||||||||| || |||||||| |||||||||||||||||||| ||||||
seq2  CCTACTCTACTGATGTTACAGAAGTAAATACTGAACGCCAGTTGGGCACA  650

seq1  GGGG  652
      ||||
seq2  GGGG  654