BAC Information

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BAC

Clone NameB6Ng01-159N18
Chromosome7 (Build37)
Map Location 152,139,635 - 152,245,346
singlet/doubletdoublet
Overlap genenone
Upstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1
Downstream gene1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159N18.bB6Ng01-159N18.g
ACCDH953401DH953402
length2361,036
definitionDH953401|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N18, 5' end.DH953402|Mus musculus domesticus DNA, BAC clone: B6Ng01-159N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,139,635 - 152,139,870)(152,244,298 - 152,245,346)
sequence
agttcatcaggcctggcagaaagcactttttacccactgagccatcacac
tggtcctgatccagtctgttttagcatctttgggccagagagagacccaa
acatttcaaggaacttacttggaaaccctgtgacatagagaagtcttggg
caatccgagaccactgttggatcatggtcttttatcagcaccaactagcg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattccacagaacatgatcatacctctctcttctgcctccttaacagtc
ttaagggttaggggcagacatggtggctgtcacattctaccaaccacata
caccagggattgagcttagggtacagtgaacaaacaaatcaaacaaaaca
aaacccttcccagatgggattggaagaccagagtcatagatgtccttacc
ccccaatgtcctccatcattccgggaaaccaggacgatgcagctgacatg
ggctgagatgacctgagcctggaccctgggtctggctctccctgtgtcct
tctgtccttccttaatgaaagcactaggccttccccacagaggagggtcc
aactggcccctttcttcctcatcttccacagcacacagagacaagacagc
acttggtatagcctgtgaggctggtgtgggaagggcaaagagccagggtc
agacagggtgaaccagggaagatgggataggagaaagtcacatcatttga
acagacgatcaaacagaactatgactgtgagcaggcattgtggttctgcc
caagctacatccagatcacccaggcctctgggtcttttgggctccctgga
gtgtcagatctccaggggagcatcatctgtccagaactttggggaagatg
agagaagcaggtccctgaagcggcgggtcacccctgaatgtgggcaaagt
ttattctgctttgaagatcagatcttcccagagacctgtctgggcaggat
ctgggtattcacctctcgcttcctgcccctcatctctttctgtgctggga
gtggtgggactggggacagttaactccgaaggaataggttgtagggaatg
gttagtgtcttgaaaggctggtatgctggaaatagggtctgtcctacaga
gcaagatgttgagactccccacgtacacagtaactgaagctagaggtggt
tcagctgaccacgtctctaggcatacccacacagtagttaatacttgggg
gtcttgacaggacccagaattgatgagggagccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_152139635_152139870
seq2: B6Ng01-159N18.b_53_288

seq1  AGTTCATCAGGCCTGGCAGAAAGCACTTTTTACCCACTGAGCCATCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCAGGCCTGGCAGAAAGCACTTTTTACCCACTGAGCCATCACAC  50

seq1  TGGTCCTGATCCAGTCTGTTTTAGCATCTTTGGGCCAGAGAGAGACCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGATCCAGTCTGTTTTAGCATCTTTGGGCCAGAGAGAGACCCAA  100

seq1  ACATTTCAAGGAACTTACTTGGAAACCCTGTGACATAGAGAAGTCTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAAGGAACTTACTTGGAAACCCTGTGACATAGAGAAGTCTTGGG  150

seq1  CAATCCGAGACCACTGTTGGATCATGGTCTTTTATCAGCACCAACTAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCGAGACCACTGTTGGATCATGGTCTTTTATCAGCACCAACTAGCG  200

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  236
      ||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  236

seq1: chr7_152244298_152245346
seq2: B6Ng01-159N18.g_68_1103 (reverse)

seq1  CAGGGCTCCCTTCATCCATGTCTTGGTCCTGCTCAGA-CCCCAAGTATTT  49
      |||||||||| ||||| || ||| |||||||   ||| ||||||||| ||
seq2  CAGGGCTCCC-TCATCAAT-TCTGGGTCCTGTCAAGACCCCCAAGTA-TT  47

seq1  AACTACTTGTTTGTGGGTATGCCTAGAGACGTGGTCAGCTGAACACCCTC  99
      ||||||   | |||||||||||||||||||||||||||||||||  ||||
seq2  AACTAC---TGTGTGGGTATGCCTAGAGACGTGGTCAGCTGAACCACCTC  94

seq1  TTTGGCCTTCAGTTACTGTGTTACGTGGGGATGTCTCAACATCTTTGCTT  149
      |     |||||||||||||| |||||||||| ||||||||||| |||| |
seq2  T---AGCTTCAGTTACTGTG-TACGTGGGGA-GTCTCAACATC-TTGC-T  137

seq1  CTGTAGGACAGACCCCTATTTCCAGCATACCAGCCTTTCAAGACACTAAC  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGACAGA-CCCTATTTCCAGCATACCAGCCTTTCAAGACACTAAC  186

seq1  CATTCCCTACAACCTATTCCTTCGGAGTTAACTGTCCCCAGTCCCACCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTACAACCTATTCCTTCGGAGTTAACTGTCCCCAGTCCCACCAC  236

seq1  TCCCAGCACAGAAAGAGATGAGGGGCAGGAAGCGAGAGGTGAATACCCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACAGAAAGAGATGAGGGGCAGGAAGCGAGAGGTGAATACCCAG  286

seq1  ATCCTGCCCAGACAGGTCTCTGGGAAGATCTGATCTTCAAAGCAGAATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCCCAGACAGGTCTCTGGGAAGATCTGATCTTCAAAGCAGAATAA  336

seq1  ACTTTGCCCACATTCAGGGGTGACCCGCCGCTTCAGGGACCTGCTTCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCCACATTCAGGGGTGACCCGCCGCTTCAGGGACCTGCTTCTCT  386

seq1  CATCTTCCCCAAAGTTCTGGACAGATGATGCTCCCCTGGAGATCTGACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCCCAAAGTTCTGGACAGATGATGCTCCCCTGGAGATCTGACAC  436

seq1  TCCAGGGAGCCCAAAAGACCCAGAGGCCTGGGTGATCTGGATGTAGCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGAGCCCAAAAGACCCAGAGGCCTGGGTGATCTGGATGTAGCTTG  486

seq1  GGCAGAACCACAATGCCTGCTCACAGTCATAGTTCTGTTTGATCGTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAACCACAATGCCTGCTCACAGTCATAGTTCTGTTTGATCGTCTGT  536

seq1  TCAAATGATGTGACTTTCTCCTATCCCATCTTCCCTGGTTCACCCTGTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGATGTGACTTTCTCCTATCCCATCTTCCCTGGTTCACCCTGTCT  586

seq1  GACCCTGGCTCTTTGCCCTTCCCACACCAGCCTCACAGGCTATACCAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGGCTCTTTGCCCTTCCCACACCAGCCTCACAGGCTATACCAAGT  636

seq1  GCTGTCTTGTCTCTGTGTGCTGTGGAAGATGAGGAAGAAAGGGGCCAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTGTCTCTGTGTGCTGTGGAAGATGAGGAAGAAAGGGGCCAGTT  686

seq1  GGACCCTCCTCTGTGGGGAAGGCCTAGTGCTTTCATTAAGGAAGGACAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTCCTCTGTGGGGAAGGCCTAGTGCTTTCATTAAGGAAGGACAGA  736

seq1  AGGACACAGGGAGAGCCAGACCCAGGGTCCAGGCTCAGGTCATCTCAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAGGGAGAGCCAGACCCAGGGTCCAGGCTCAGGTCATCTCAGCC  786

seq1  CATGTCAGCTGCATCGTCCTGGTTTCCCGGAATGATGGAGGACATTGGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGCTGCATCGTCCTGGTTTCCCGGAATGATGGAGGACATTGGGG  836

seq1  GGTAAGGACATCTATGACTCTGGTCTTCCAATCCCATCTGGGAAGGGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGACATCTATGACTCTGGTCTTCCAATCCCATCTGGGAAGGGTTT  886

seq1  TGTTTTGTTTGATTTGTTTGTTCACTGTACCCTAAGCTCAATCCCTGGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTGATTTGTTTGTTCACTGTACCCTAAGCTCAATCCCTGGTG  936

seq1  TATGTGGTTGGTAGAATGTGACAGCCACCATGTCTGCCCCTAACCCTTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTTGGTAGAATGTGACAGCCACCATGTCTGCCCCTAACCCTTAA  986

seq1  GACTGTTAAGGAGGCAGAAGAGAGAGGTATGATCATGTTCTGTGGAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTAAGGAGGCAGAAGAGAGAGGTATGATCATGTTCTGTGGAATTC  1036