BAC Information

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BAC

Clone NameB6Ng01-160E22
Chromosome7 (Build37)
Map Location 24,208,336 - 24,209,409
singlet/doubletsinglet
Overlap geneNlrp5
Upstream geneLOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261
Downstream geneLOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160E22.bB6Ng01-160E22.g
ACCDH953719DH953720
length1,1961,050
definitionDH953719|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E22, 5' end.DH953720|Mus musculus domesticus DNA, BAC clone: B6Ng01-160E22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagcctggccttgaactttctaacgaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctggtgttagg
agcccttttgttccttttcacatgttatcaagtggttaaggcagggcgga
ttctagatgaaattcaggacaagctatcagaagtaaagcggggagagaga
gtaggagcaaagagaaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagttaaggttaggtaggaatacctgga
gagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaatta
gcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcgg
ggagccagctcttagtagttctgaagcagatgaagaattctcctctgagg
aaacagactgggaggaagaagcagcccattaccagccagctaattggtca
agaaaaaagccaaaagcggctggcgaaggccagtttgctgattggcctca
gggcagtcggcttcaaggtccgccctatgcggagtccccgccctgcgtag
tgcgtcagccctgcgcagagaggcagtgcgcagactcattcattcccaga
gaggaacaaaggaaaatacaacaggcatttccggtctttgaaggagccga
gggtgggcgtgtccacgctccgggtagaatacttacaaattaaagaaatt
gccgagtcggtccgtaaatatggaaccaatgctaattttaccttggtgca
gttagacaggctcgccggcatggcactaactcctgctgactggcaacggg
tgtaaaagccgctctcctagtatgggcaaatatatggaatggagagcgct
ttggcacgagctgcacagcgcaagcccgagcaacgcagctgctttgactc
cagagcagagaagattgaactttgactgtacggtcaggagcttattctgc
tgatcagaacactaccattggggagcttatgcccagattctccagggcta
ttaggcttgaaggccctcttcgagccagtgaaaccatgtcaggttacaag
atatccaagaacctagatctatctcagacatgtgtgcctggagtac
gaattcttgtgtggcatgcaataaggcagacttcaaccaccagaatcacg
taaactatacatgagggcacaagcctataatcctagcacttgggcagtgc
tggaaggtggacctgaagtccaaggtcagtagcatcttgcagaagaccag
agttgggttcctatcctgtaaatccagctctggtgagctagcgccctctg
ctggcctccatgggcaccggatgcacatgcgcacaaaaacctttaagatt
gttaaaaagctgctcagcatcacccacagctacacagtgagtatgagacc
agcttaggataaattagagcccatctcagaaaagggaaacttaactgaca
ggagagttcacacaggaacgcagtcccagcacttgagtaacagtttcaca
cagtataggctacgtctcagaaactctgtctcagaaacaaactgtatgca
aagagctacagctttgagagctggcaagatgggtaaacagaagagtgtta
ttgattaaatgtgattaataactaaatgaacaattaaatatgaccattct
ctctctctcaccccctcccacttctgtaggtttaagagtgcagaggtagt
gtctggcctgaaacatctctggaagctcctttttagcaatcaaaacttaa
agtacctcaatctagggaacactcccatgaaggatgatgacatgaagtta
gcctgcgaagcgctgaaacatccaaagtgctccgtggagactctgaggtg
agggtgtgactttttactttgaaatttggaatgacttccaggaagttgaa
aaatacagcaacttgtgggtggtgaactgtggttaaaaggtggcctgcat
ccactctgccccagggctctggctactagtgaagtgggagcagactttta
gctacactacccttgctggtgctggctggtgtgctatgtgagacgctgga
cactgctcaaagtggggagcgcagtctgagtctcggagcttcggagctgc
tcgggttcccaggcctgcacaaagctggacctatagttctcagacctggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24208336_24209409
seq2: B6Ng01-160E22.g_68_1117

seq1  GAATTCTTGTGTGGCATGCAATAAGGCAGACTTCAACCACCAGAATCACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGTGGCATGCAATAAGGCAGACTTCAACCACCAGAATCACG  50

seq1  TAAACTATACATGAGGGCACAAGCCTATAATCCTAGCACTTGGGCAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATACATGAGGGCACAAGCCTATAATCCTAGCACTTGGGCAGTGC  100

seq1  TGGAAGGTGGACCTGAAGTCCAAGGTCAGTAGCATCTTGCAGAAGACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTGGACCTGAAGTCCAAGGTCAGTAGCATCTTGCAGAAGACCAG  150

seq1  AGTTGGGTTCCTATCCTGTAAATCCAGCTCTGGTGAGCTAGCGCCCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGTTCCTATCCTGTAAATCCAGCTCTGGTGAGCTAGCGCCCTCTG  200

seq1  CTGGCCTCCATGGGCACCGGATGCACATGCGCACAAAAACCTTTAAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCCATGGGCACCGGATGCACATGCGCACAAAAACCTTTAAGATT  250

seq1  GTTAAAAAGCTGCTCAGCATCACCCACAGCTACACAGTGAGTATGAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAGCTGCTCAGCATCACCCACAGCTACACAGTGAGTATGAGACC  300

seq1  AGCTTAGGATAAATTAGAGCCCATCTCAGAAAAGGGAAACTTAACTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGATAAATTAGAGCCCATCTCAGAAAAGGGAAACTTAACTGACA  350

seq1  GGAGAGTTCACACAGGAACGCAGTCCCAGCACTTGAGTAACAGTTTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTTCACACAGGAACGCAGTCCCAGCACTTGAGTAACAGTTTCACA  400

seq1  CAGTATAGGCTACGTCTCAGAAACTCTGTCTCAGAAACAAACTGTATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAGGCTACGTCTCAGAAACTCTGTCTCAGAAACAAACTGTATGCA  450

seq1  AAGAGCTACAGCTTTGAGAGCTGGCAAGATGGGTAAACAGAAGAGTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTACAGCTTTGAGAGCTGGCAAGATGGGTAAACAGAAGAGTGTTA  500

seq1  TTGATTAAATGTGATTAATAACTAAATGAACAATTAAATATGACCATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAAATGTGATTAATAACTAAATGAACAATTAAATATGACCATTCT  550

seq1  CTCTCTCTCACCCCCTCCCACTTCTGTAGGTTTAAGAGTGCAGAGGTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCACCCCCTCCCACTTCTGTAGGTTTAAGAGTGCAGAGGTAGT  600

seq1  GTCTGGCCTGAAACATCTCTGGAAGCTCCTTTTTAGCAATCAAAACTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCCTGAAACATCTCTGGAAGCTCCTTTTTAGCAATCAAAACTTAA  650

seq1  AGTACCTCAATCTAGGGAACACTCCCATGAAGGATGATGACATGAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTCAATCTAGGGAACACTCCCATGAAGGATGATGACATGAAGTTA  700

seq1  GCCTGCGAAGCGCTGAAACATCCAAAGTGCTCCGTGGAGACTCTGAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGAAGCGCTGAAACATCCAAAGTGCTCCGTGGAGACTCTGAGGTG  750

seq1  AGGGTGTGACTTTTTACTTTGAAATTTGGAATGACTTCCAGGAAGTTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGACTTTTTACTTTGAAATTTGGAATGACTTCCAGGAAGTTGAA  800

seq1  AAATACAGCAACTTGTGGGTGGTGAACTGTGGGTTAAAAGGTGGCCTGCA  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAATACAGCAACTTGTGGGTGGTGAACTGT-GGTTAAAAGGTGGCCTGCA  849

seq1  TCCACTCTGCCCCAGGGCTCTGGCTACTAGTGGAAGTGGGAGGCAAGACT  900
      ||||||||||||||||||||||||||||||| ||||||||||   |||| 
seq2  TCCACTCTGCCCCAGGGCTCTGGCTACTAGT-GAAGTGGGAG--CAGAC-  895

seq1  TTTTAGCTACACCTACCCCTTGCTGGTGCTGGGCTGGTGTTGGCTATGTG  950
      ||||||||||| ||| |||||||||||||| |||||||||  ||||||||
seq2  TTTTAGCTACA-CTA-CCCTTGCTGGTGCT-GGCTGGTGT--GCTATGTG  940

seq1  AAGACGCTGGACACTGCTCCAAAGGTGGGGGAGCGCAGTCTGAAGTCTCG  1000
       ||||||||||||||||| |||||   ||||||||||||||| |||||| 
seq2  -AGACGCTGGACACTGCT-CAAAG--TGGGGAGCGCAGTCTG-AGTCTC-  984

seq1  GGAGCTTCGGGAGCTGGCTCGGGGGTCCCCAGGCCTGCACAGAGGCTGGA  1050
      |||||||| |||||| ||||  |||| |||||||||||||| | ||||||
seq2  GGAGCTTC-GGAGCT-GCTC--GGGTTCCCAGGCCTGCACA-AAGCTGGA  1029

seq1  GCTATTAGGTTCTCAGACTCTGGG  1074
       ||||   |||||||||| |||||
seq2  CCTAT--AGTTCTCAGAC-CTGGG  1050