BAC Information

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BAC

Clone NameB6Ng01-160H16
Chromosome7 (Build37)
Map Location 53,290,056 - 53,290,996
singlet/doubletsinglet
Overlap geneNomo1
Upstream genePrr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6
Downstream geneKcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160H16.bB6Ng01-160H16.g
ACCDH953843DH953844
length617943
definitionDH953843|Mus musculus domesticus DNA, BAC clone: B6Ng01-160H16, 5' end.DH953844|Mus musculus domesticus DNA, BAC clone: B6Ng01-160H16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatttcaaagaaagcctgccaggctcaataaaaattgaaagac
accagactcagatatggtggtttgcaccataatcccagcacttgtgggac
tgagcagggcactctcaagttccagctaaacctggactatgccacaagac
tctgtttcaaaacaacagaaactagacctgtagccccagctacttgggag
actaaaccaagaggattacagttgaaggctagcctgagttaaagcgtgac
tcagcaccggatgcatacacagataacttagtgagaccttatctcaaaaa
taaaattttttaaaatgggccaagtggaaggatacaaaagagcacacctg
gatgatgtaggtcagtgatagagcattgggctagcatgtgagaggccctg
agttcaatcccccgtagcacaaaaggagatggtggtgggcaaggatacag
ttcagttggtagagtgcttgcctttgcctagcgtactgtagtcctagtgt
tgcacatggaggcaggaggatcagaacttcaagactgtcttcagctacac
agccagttcaaggccagtctggggtatatgagactctggatggatggatg
gatggatggatggatgg
gaattcctgtgggcgtagcctttcttcaaactacctttcttctaggtggg
gttagaggtggtgtaagatttcccgacgcggagaatcaactgtcatcttc
caggctttctctgtagagtccctctacctcgttggttgatttataattga
ttttccaattttttgagacacagtatggccttagatttacaatataccca
aggctggctttgaactctggacactcttgcctctgtttcccacagtgctg
gattacaggagtatgtcctggttccatgtcaccaggggccgtgccaccta
ctggctttgtagcattgggcatctcagaagctgccctggaaggcttttca
gcttgagctttctgcagctttgagaggaaggagaggacagtcaggggtgt
cagaggacagtcacctcacccctaagcactaacagggattacgagagcag
agagtaggttttgtggtccattgtgaactgtggtgctccagccttagggc
tccttgtcctcctctctgaagcaacccatccttttgtaatctctgcttac
aacatcagacatctcatgcatgttatctccacggagggttttctgagctg
tacttcacaaaagacttgtactgcatggtccagagagaagtatggcagcc
atgcttttgattttgaattaatgggcttcttaaatacatgtatagtgaga
gtttgagttttttttttttatcacaaaaaatattatatgttgtcatttta
atcccatgtgtgggacatgggggctgcctcagattgtccccagtatctga
tgatgatctcccttcaggcactagcaggacaaattttgccagctgcagat
aagtttctgtgagtgtggtgaaattggaattctgggactctcagagggaa
tataaattgctaaggtcttgagaggtgggggtttggttggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53290056_53290996
seq2: B6Ng01-160H16.g_67_1009

seq1  GAATTCCTGTGGGCGTAGCCTTTCTTCAAACTACCTTTCTTCTAGGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGGGCGTAGCCTTTCTTCAAACTACCTTTCTTCTAGGTGGG  50

seq1  GTTAGAGGTGGTGTAAGATTTCCCGACGCGGAGAATCAACTGTCATCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGGTGGTGTAAGATTTCCCGACGCGGAGAATCAACTGTCATCTTC  100

seq1  CAGGCTTTCTCTGTAGAGTCCCTCTACCTCGTTGGTTGATTTATAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTCTCTGTAGAGTCCCTCTACCTCGTTGGTTGATTTATAATTGA  150

seq1  TTTTCCAATTTTTTGAGACACAGTATGGCCTTAGATTTACAATATACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAATTTTTTGAGACACAGTATGGCCTTAGATTTACAATATACCCA  200

seq1  AGGCTGGCTTTGAACTCTGGACACTCTTGCCTCTGTTTCCCACAGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCTTTGAACTCTGGACACTCTTGCCTCTGTTTCCCACAGTGCTG  250

seq1  GATTACAGGAGTATGTCCTGGTTCCATGTCACCAGGGGCCGTGCCACCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGGAGTATGTCCTGGTTCCATGTCACCAGGGGCCGTGCCACCTA  300

seq1  CTGGCTTTGTAGCATTGGGCATCTCAGAAGCTGCCCTGGAAGGCTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTGTAGCATTGGGCATCTCAGAAGCTGCCCTGGAAGGCTTTTCA  350

seq1  GCTTGAGCTTTCTGCAGCTTTGAGAGGAAGGAGAGGACAGTCAGGGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCTTTCTGCAGCTTTGAGAGGAAGGAGAGGACAGTCAGGGGTGT  400

seq1  CAGAGGACAGTCACCTCACCCCTAAGCACTAACAGGGATTACGAGAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACAGTCACCTCACCCCTAAGCACTAACAGGGATTACGAGAGCAG  450

seq1  AGAGTAGGTTTTGTGGTCCATTGTGAACTGTGGTGCTCCAGCCTTAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGTTTTGTGGTCCATTGTGAACTGTGGTGCTCCAGCCTTAGGGC  500

seq1  TCCTTGTCCTCCTCTCTGAAGCAACCCATCCTTTTGTAATCTCTGCTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTCCTCCTCTCTGAAGCAACCCATCCTTTTGTAATCTCTGCTTAC  550

seq1  AACATCAGACATCTCATGCATGTTATCTCCACGGAGGGTTTTCTGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGACATCTCATGCATGTTATCTCCACGGAGGGTTTTCTGAGCTG  600

seq1  TACTTCACAAAAGACTTGTACTGCATGGTCCAGAGAGAAGTATGGCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACAAAAGACTTGTACTGCATGGTCCAGAGAGAAGTATGGCAGCC  650

seq1  ATGCTTTTGATTTTGAATTAATGGGCTTCTTAAATACATGTATAGTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTGATTTTGAATTAATGGGCTTCTTAAATACATGTATAGTGAGA  700

seq1  GTTTGAGTTTTTTTTTTTTATCACAAAAAATATTATATGTTGTCATTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTTTTTTTTTTTTATCACAAAAAATATTATATGTTGTCATTTTA  750

seq1  ATCCCATGTGTGGGACAT-GGGGCTGCCTCAGATTGTCCCCAGTATCTGA  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCCCATGTGTGGGACATGGGGGCTGCCTCAGATTGTCCCCAGTATCTGA  800

seq1  TGATGATCTCCC-TCAGGCACTAGCAGGACAAATTTTGCCAGCTGCAGAT  848
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGATGATCTCCCTTCAGGCACTAGCAGGACAAATTTTGCCAGCTGCAGAT  850

seq1  -AGTTTCTGTGAGTGT-GTGACATTTGGAATTCTGGGGACTCTTCAGAGG  896
       ||||||||||||||| |||| | |||||||||| ||||||| |||||||
seq2  AAGTTTCTGTGAGTGTGGTGA-AATTGGAATTCT-GGGACTC-TCAGAGG  897

seq1  GAATATAAA-TGCTAGGGCCCTGAGAGGTGGGGTGTTGGTTGGTTG  941
      ||||||||| ||||| || | ||||||||||||  |||||||||||
seq2  GAATATAAATTGCTAAGGTCTTGAGAGGTGGGGGTTTGGTTGGTTG  943