This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
B6Ng01-161A17
Chromosome
7 (Build37)
Map Location
103,393,935 - 103,507,885
singlet/doublet
doublet
Overlap gene
Odz4
,
LOC670727
Upstream gene
LOC666823
,
Frda-ps
,
EG666836
Downstream gene
LOC666858
,
Nars2
,
Gab2
,
LOC100040457
,
Usp35
,
EG622320
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC666823
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666823
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins
pseudo
: _no_value
name
Frda-ps
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:260347
definition
note
: frataxin pseudogene
pseudo
: _no_value
name
EG666836
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666836
MGI:3646693
definition
note
: predicted gene, EG666836
pseudo
: _no_value
name
Odz4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:23966
MGI:2447063
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC670727
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:670727
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
LOC666858
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666858
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Nars2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:244141
MGI:2142075
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gab2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14389
MGI:1333854
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100040457
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040457
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein
name
Usp35
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:244144
MGI:2685339
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 1 Protein
name
EG622320
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:622320
MGI:3643121
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Odz4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803394
GeneID:23966
MGI:2447063
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: odd Oz/ten-m homolog 4 (Drosophila)
transcript_id
: NM_011858.3
name
LOC670727
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149257601
GeneID:670727
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: hypothetical LOC670727
transcript_id
: XM_001474199.1
name
Nars2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802200
GeneID:244141
MGI:2142075
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)
transcript_id
: NM_153591.3
name
Gab2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6753931
GeneID:14389
MGI:1333854
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: growth factor receptor bound protein 2-associated protein 2
transcript_id
: NM_010248.1
name
LOC100040457
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149257603
GeneID:100040457
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein
product
: hypothetical protein LOC100040457
transcript_id
: XM_001474288.1
name
Usp35
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149257588
GeneID:244144
MGI:2685339
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 1 Protein
product
: ubiquitin specific peptidase 35, transcript variant 3
transcript_id
: XM_886523.3
name
EG622320
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142352170
GeneID:622320
MGI:3643121
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: predicted gene, EG622320
transcript_id
: NM_001039039.2
name
LOC670727
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149257602
GeneID:670727
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001474249.1
name
Odz4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:124248484
GeneID:23966
MGI:2447063
definition
GO_process
: GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP]
codon_start
: 1
note
: lethal, Chr 7, Rinchik 3
product
: odd Oz/ten-m homolog 4
protein_id
: NP_035988.2
name
Nars2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31543189
CCDS:CCDS21454.1
GeneID:244141
MGI:2142075
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IEA]
GO_function
: GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO_process
: GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]; GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)
protein_id
: NP_705819.2
name
Gab2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753932
CCDS:CCDS21455.1
GeneID:14389
MGI:1333854
definition
GO_function
: GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0016477 - cell migration [Evidence IDA]; GO:0007229 - integrin-mediated signaling pathway [Evidence IDA]
codon_start
: 1
exception
: mismatches in translation
product
: growth factor receptor bound protein 2-associated protein 2
protein_id
: NP_034378.1
name
LOC100040457
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149257604
GeneID:100040457
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001474338.1
name
Usp35
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149257589
GeneID:244144
MGI:2685339
definition
codon_start
: 1
product
: ubiquitin specific peptidase 35 isoform 3
protein_id
: XP_891616.2
name
EG622320
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:85702330
CCDS:CCDS21456.1
GeneID:622320
MGI:3643121
definition
codon_start
: 1
exception
: mismatches in translation
product
: hypothetical protein LOC622320
protein_id
: NP_001034128.1
name
LOC666823
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666823
definition
number
: 1
pseudo
: _no_value
name
LOC666858
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666858
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-361D23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385N17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-092J07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-122A02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-168O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-390C20
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-072O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-408E04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448J03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-348M12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-492G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-473L05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296L08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-116D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-354H14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-166C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-546H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-272J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-317I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-548I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-536F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-450L08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275E10
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-408H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-124N03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-354I11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-049E13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-328D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-192B07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-467D06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-402N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-424G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-055L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-169E20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431K07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086A14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410M03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290D01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-054G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-137P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-340J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-123H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-089P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-341K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-534F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-063M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270P04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-398H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-392D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-312F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385C20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-402P21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-085P22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484E16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-276I18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424N10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389J06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-353P11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-070I19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-075G01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-520G10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-510K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537O22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-415L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-497D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-467K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-391J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066P19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-262I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-523M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-375P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-292L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-064M05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-135M13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-064N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-081I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-082D04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-092I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-325P05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-455H23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528L01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-069M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-111A04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-447A19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-464H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-088I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-093M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-381N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-365N01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-185L20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-198P23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-392N04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-118L12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-276O13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-115D23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-182J20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-045C08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-021K18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-142I04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-060H16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-221C01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-304I08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-123J21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-341H14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-310P18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-304O13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-174H10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-106O06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-273C20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-183B04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-056O01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-166A06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-323M09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-328H16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-229F10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-307C19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-153J20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-149P03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-008P13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-346N06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-258I03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-339C11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-297E04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-344N02
singlet/doublet
doublet
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unique
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doublet
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unique
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B6Ng01-309B04
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doublet
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unique
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B6Ng01-121D14
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doublet
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B6Ng01-134P11
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doublet
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B6Ng01-198G03
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doublet
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B6Ng01-200F03
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singlet
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unique
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B6Ng01-325A07
singlet/doublet
doublet
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unique
clone name
B6Ng01-325A09
singlet/doublet
doublet
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unique
clone name
B6Ng01-156G05
singlet/doublet
doublet
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unique
clone name
B6Ng01-279J09
singlet/doublet
singlet
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unique
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B6Ng01-173F23
singlet/doublet
doublet
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unique
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B6Ng01-289I22
singlet/doublet
doublet
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unique
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B6Ng01-155A11
singlet/doublet
doublet
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unique
clone name
B6Ng01-001K04
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doublet
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unique
clone name
B6Ng01-191D19
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doublet
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unique
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B6Ng01-324C07
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singlet
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unique
clone name
B6Ng01-133H23
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doublet
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unique
clone name
B6Ng01-186F10
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doublet
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unique
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B6Ng01-285O03
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doublet
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unique
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B6Ng01-161A17
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doublet
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B6Ng01-278P11
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doublet
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B6Ng01-087N23
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doublet
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doublet
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B6Ng01-234F03
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doublet
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B6Ng01-022E08
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doublet
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B6Ng01-261J01
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doublet
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B6Ng01-075C11
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doublet
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B6Ng01-221M03
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doublet
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B6Ng01-246B14
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doublet
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B6Ng01-310J19
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B6Ng01-014A20
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doublet
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B6Ng01-204O09
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singlet
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B6Ng01-295G04
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doublet
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unique
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B6Ng01-194B16
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doublet
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unique
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B6Ng01-189F24
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doublet
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B6Ng01-291N19
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doublet
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B6Ng01-233J22
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doublet
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B6Ng01-171F03
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singlet
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unique
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B6Ng01-167E09
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B6Ng01-159P15
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doublet
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B6Ng01-182C14
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singlet
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unique
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B6Ng01-169P18
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doublet
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unique
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B6Ng01-239B04
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doublet
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unique
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B6Ng01-131K04
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doublet
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B6Ng01-251G10
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B6Ng01-071N20
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doublet
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unique
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B6Ng01-077C24
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singlet
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B6Ng01-044M11
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singlet
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B6Ng01-318N15
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B6Ng01-126L12
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doublet
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B6Ng01-275F08
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B6Ng01-143G06
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B6Ng01-261K18
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doublet
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B6Ng01-140P15
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B6Ng01-223K03
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B6Ng01-212J07
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doublet
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B6Ng01-251C05
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B6Ng01-253O11
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B6Ng01-211A22
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B6Ng01-031C08
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B6Ng01-120P09
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B6Ng01-256G06
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doublet
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B6Ng01-256G07
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B6Ng01-014E09
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B6Ng01-282P21
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doublet
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B6Ng01-217H19
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B6Ng01-055P04
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doublet
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B6Ng01-068K22
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B6Ng01-314E20
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B6Ng01-251N04
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