BAC Information

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BAC

Clone NameB6Ng01-161B24
Chromosome7 (Build37)
Map Location 139,175,480 - 139,305,135
singlet/doubletdoublet
Overlap geneGpr26, Cpxm2
Upstream geneDmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679
Downstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161B24.bB6Ng01-161B24.g
ACCDH954325DH954326
length1,1551,072
definitionDH954325|Mus musculus domesticus DNA, BAC clone: B6Ng01-161B24, 5' end.DH954326|Mus musculus domesticus DNA, BAC clone: B6Ng01-161B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,175,480 - 139,176,655)(139,304,080 - 139,305,135)
sequence
gaattcagaataggagctggctctaaatgctgcctttatagttgattata
gctgcctttatagttgatagtcttatggttatcttggggatctgaggtag
tcatgtctttcagcttctctacagtaatgcagttgacacaatacttagaa
taagtgcctaatcaatgctcattgccaccatttttgttttcattgctttc
atgtaatattaattatagaggcatgtaaccatgttctgaacacatgccca
cagctccctcaagtaacacatcccccatctctccacaggctggtggaact
cttctccacagcacccattggctctcactggggagtgctgtccaagtgct
tggcctacagcaaggccgcttctgaccccttcgtgtattccttgctgcga
caccaataccgcaggagctgcaaggagctcctgaacaggatcttcaacag
acgctcccttcactctgtgggcctcacaggtgactctcacagccagaaca
ttctgccagtgtcggaatgaaggaccactctcctgatggggagttcagaa
cgaggtggccagagcaaagggaggtggtctgggactcctgggtggacaat
aactgccaccattgcctggtgattgccgtgatgctgacgtctgaacaaga
tctggggcctgcttcttggctcttccagggtagatgtcagactgtcccta
tttgtcgccaaaggatggccataggccacgccctggcctttctttctgag
agtgtgtattgagagcttagactcaccaaaggcctctcagaggacggtag
gccagttagtgtcaaagacacagagtgctggtggcaggtgtgggcatgat
atccacctgtctactaactactgctcatgggctccatgctccaagggaca
tcttagtgatgctgaagtgaggtgtctgtggccatctgctccagatctac
tatggcatctcttttcccttggtagttgtgctgctgtacccaaatatatc
agctgggtgcactacatcatgatcagctgatacctggggccctgcacatc
aatggaccatgttttaacaccagctggctacctacccagttgtcttagat
gataaatggaacacctttgtcctcttacatcaacctaggtgcagaatgac
aatct
gaattctgtgactcaaagtcaggtgacagtgcttgcctgacaagtacttt
attcactgacccatctcccagccattcttctctttgccttttgtgcattt
gtttcctgttcatgctcgatgcaagcgcggctccttctagcggcatccat
tacagtttcctaacaggcctttctgctcaccattgcattggtgttagcgt
ttggtaggtcctaagttcggctgtacggtgttctcatgcctggtaaagga
taggaagaatgagctgactctgcgtgtgtgttacattccccaaaacctgt
catagtttcccttctggccctggggtccacatatctaggcttcctgactg
tttttcatggacacaatttttcagtcacctgtggaccacgttgattcccc
atgaccactgggaagccgctcacgtcagtcttgcccacctcaccttcaag
acacccgcactcctctgagcttgtctggggttgggttctcagaggagttc
tgctagtgggttgtacttctgtcccctgccacaaaggacctctgtctttg
tatgttgtgatctaggggacacaatgtctttgaattttcccagaggctga
agctgtattttgtatcttgttttgttcagaagatttttgagggaaggaga
aaagaaagtggaagtgttttacccagcccctgttgggagcctctgcctct
gccatcttaagtggaccctgtcaggcggtgtctttattacagacctccag
ccacgttaacctttcacagaattgagtctgttaaggagccttgcaaattg
tctttgtataacttgatgccttgagaaaattacattattttctcaaacct
attttgctgcctttgttccaacatgttaatggtgttttccagacccgctt
atccttgaaggaatcaaattcttttattttcagcaacttcttactgaaac
atttccgaaaggtattccctaacttttttaatttttaggttttcttctca
aaatgaccatttatttagttaatgcacacggaggggtgattacagattca
gaaggacagcatggccaggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_139175480_139176655
seq2: B6Ng01-161B24.b_47_1201

seq1  GAATTCAGAATAGGAGCTGGCTCTAAATGCTGCCTTTATAGTTGATTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATAGGAGCTGGCTCTAAATGCTGCCTTTATAGTTGATTATA  50

seq1  GCTGCCTTTATAGTTGATAGTCTTATGGTTATCTTGGGGATCTGAGGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTTATAGTTGATAGTCTTATGGTTATCTTGGGGATCTGAGGTAG  100

seq1  TCATGTCTTTCAGCTTCTCTACAGTAATGCAGTTGACACAATACTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTTTCAGCTTCTCTACAGTAATGCAGTTGACACAATACTTAGAA  150

seq1  TAAGTGCCTAATCAATGCTCATTGCCACCATTTTTGTTTTCATTGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCCTAATCAATGCTCATTGCCACCATTTTTGTTTTCATTGCTTTC  200

seq1  ATGTAATATTAATTATAGAGGCATGTAACCATGTTCTGAACACATGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATATTAATTATAGAGGCATGTAACCATGTTCTGAACACATGCCCA  250

seq1  CAGCTCCCTCAAGTAACACATCCCCCATCTCTCCACAGGCTGGTGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCCTCAAGTAACACATCCCCCATCTCTCCACAGGCTGGTGGAACT  300

seq1  CTTCTCCACAGCACCCATTGGCTCTCACTGGGGAGTGCTGTCCAAGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCACAGCACCCATTGGCTCTCACTGGGGAGTGCTGTCCAAGTGCT  350

seq1  TGGCCTACAGCAAGGCCGCTTCTGACCCCTTCGTGTATTCCTTGCTGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTACAGCAAGGCCGCTTCTGACCCCTTCGTGTATTCCTTGCTGCGA  400

seq1  CACCAATACCGCAGGAGCTGCAAGGAGCTCCTGAACAGGATCTTCAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATACCGCAGGAGCTGCAAGGAGCTCCTGAACAGGATCTTCAACAG  450

seq1  ACGCTCCCTTCACTCTGTGGGCCTCACAGGTGACTCTCACAGCCAGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCCCTTCACTCTGTGGGCCTCACAGGTGACTCTCACAGCCAGAACA  500

seq1  TTCTGCCAGTGTCGGAATGAAGGACCACTCTCCTGATGGGGAGTTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAGTGTCGGAATGAAGGACCACTCTCCTGATGGGGAGTTCAGAA  550

seq1  CGAGGTGGCCAGAGCAAAGGGAGGTGGTCTGGGACTCCTGGGTGGACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGGCCAGAGCAAAGGGAGGTGGTCTGGGACTCCTGGGTGGACAAT  600

seq1  AACTGCCACCATTGCCTGGTGATTGCCGTGATGCTGACGTCTGAACAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCACCATTGCCTGGTGATTGCCGTGATGCTGACGTCTGAACAAGA  650

seq1  TCTGGGGCCTGCTTCTTGGCTCTTCCAGGGTAGATGTCAGACTGTCCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCCTGCTTCTTGGCTCTTCCAGGGTAGATGTCAGACTGTCCCTA  700

seq1  TTTGTCGCCAAAGGATGGCCATAGGCCACGCCCTGGCCTTTCTTTCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCGCCAAAGGATGGCCATAGGCCACGCCCTGGCCTTTCTTTCTGAG  750

seq1  AGTGTGTATTGAGAGCTTAGACTCACCAAAGGCCTCTCAGAGGACGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTATTGAGAGCTTAGACTCACCAAAGGCCTCTCAGAGGACGGTAG  800

seq1  GCCAGTTAGTGTCAAAGACACAGAGTGCTGGTGGCAGGTGTGGGCATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTAGTGTCAAAGACACAGAGTGCTGGTGGCAGGTGTGGGCATGAT  850

seq1  ATCCACCTGTCTACTAACTACTGCTCATGGGGCTCCATGCTCCAAGGGAC  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCCACCTGTCTACTAACTACTGCTCAT-GGGCTCCATGCTCCAAGGGAC  899

seq1  ATCTTAGTGATGCTGAAAGTGAGGTTGTCTGTGGCCATCTGGCTCCAGAT  950
      ||||||||||||||| |||||||| ||||||||||||||| |||||||||
seq2  ATCTTAGTGATGCTG-AAGTGAGG-TGTCTGTGGCCATCT-GCTCCAGAT  946

seq1  CTACTATGGCATCTCTTTTCCCCTTGGTAGTGTTTGCTGCTGTAACCCAA  1000
      ||||||||||||||||||| ||||||||||| | ||||||||| ||||||
seq2  CTACTATGGCATCTCTTTT-CCCTTGGTAGT-TGTGCTGCTGT-ACCCAA  993

seq1  ATATTATCCAGCT-GGTGCCAACTACATCATGATCAGCTGATACCCTTGG  1049
      ||| ||| ||||| |||||  |||||||||||||||||||||| ||| ||
seq2  ATA-TAT-CAGCTGGGTGC--ACTACATCATGATCAGCTGATA-CCTGGG  1038

seq1  GCCCTGCAC-TCAATGGGAACATGTTTAACAACCAGTTTGCTACCTA-CC  1097
      ||||||||| ||||| ||| ||||||| |  ||||| | |||||||| ||
seq2  GCCCTGCACATCAAT-GGACCATGTTTTAACACCAGCTGGCTACCTACCC  1087

seq1  AGTTGTCTTAGGAATGATAAATTGGACTCACCTTTTGTCCCTCTTTCATC  1147
      |||||||||||  ||||||||| | |  |||| ||||| |||||| ||||
seq2  AGTTGTCTTAG--ATGATAAATGGAA--CACC-TTTGT-CCTCTTACATC  1131

seq1  AAACTAATGTTTGCGTGTATTGACAATCT  1176
      || |||      | |   | |||||||||
seq2  AACCTA-----GGTGCAGAATGACAATCT  1155

seq1: chr7_139304080_139305135
seq2: B6Ng01-161B24.g_67_1138 (reverse)

seq1  ACCCCTG--CATGCTGTCC-TCTGACTCTGTACTCA--CCTCCCTGTGCA  45
      |||||||  |||||||||| ||||| |||||| |||  ||||| ||||||
seq2  ACCCCTGGCCATGCTGTCCTTCTGAATCTGTAATCACCCCTCCGTGTGCA  50

seq1  TTAACT-AATAAAT-GTCATTTTGAGAAGAAAAACTAAAAA-TAAAAAAG  92
      |||||| ||||||| |||||||||||||||||| ||||||| ||||||||
seq2  TTAACTAAATAAATGGTCATTTTGAGAAGAAAACCTAAAAATTAAAAAAG  100

seq1  TTA-GGAATACATTTCGAAAATTGTTCAGTAAGAAGTTGCTG-AAATAAA  140
      ||| ||||||| ||||| ||||  |||||||||||||||||| |||||||
seq2  TTAGGGAATACCTTTCGGAAATGTTTCAGTAAGAAGTTGCTGAAAATAAA  150

seq1  AG-ATTTGATTCCTTCAAGGATAAGCGGGTCTGGAAAACACCATTAACAT  189
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGATTCCTTCAAGGATAAGCGGGTCTGGAAAACACCATTAACAT  200

seq1  GGTGTGAAC-AAGGCAGC-AAATAGG-TTGAG-AAATAATGTAATTTTCT  235
      | || |||| |||||||| ||||||| ||||| |||||||||||||||||
seq2  GTTG-GAACAAAGGCAGCAAAATAGGTTTGAGAAAATAATGTAATTTTCT  249

seq1  CAAGGCAATCAAGTTATAC-AAGAC-ATTTGCAAGGCTCC-TAACAGACT  282
      |||||| |||||||||||| ||||| |||||||||||||| |||||||||
seq2  CAAGGC-ATCAAGTTATACAAAGACAATTTGCAAGGCTCCTTAACAGACT  298

seq1  CAATTCTGTGAAGGTTAAACGTGGCTGGAGGTCTGTAATAAAGACACCGC  332
      |||||||||||| | | |||||||||||||||||||||||||||||||||
seq2  CAATTCTGTGAAAGGTTAACGTGGCTGGAGGTCTGTAATAAAGACACCGC  348

seq1  CTGACAGGGTCCACTTAAGATGGCAGAGGCAGAGGCTCCCTACAGGGGCT  382
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGACAGGGTCCACTTAAGATGGCAGAGGCAGAGGCTCCCAACAGGGGCT  398

seq1  GGGTAAAACACTTCCACTTTCTTTTCTCCTTCCCTCAAAAATCTTCTGAA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAACACTTCCACTTTCTTTTCTCCTTCCCTCAAAAATCTTCTGAA  448

seq1  CAAAACAAGATACAAAATACAGCTTCAGCCTCTGGGAAAATTCAAAGACA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAGATACAAAATACAGCTTCAGCCTCTGGGAAAATTCAAAGACA  498

seq1  TTGTGTCCCCTAGATCACAACATACAAAGACAGAGGTCCTTTGTGGCAGG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCCCTAGATCACAACATACAAAGACAGAGGTCCTTTGTGGCAGG  548

seq1  GGACAGAAGTACAACCCACTAGCAGAACTCCTCTGAGAACCCAACCCCAG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAGTACAACCCACTAGCAGAACTCCTCTGAGAACCCAACCCCAG  598

seq1  ACAAGCTCAGAGGAGTGCGGGTGTCTTGAAGGTGAGGTGGGCAAGACTGA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCAGAGGAGTGCGGGTGTCTTGAAGGTGAGGTGGGCAAGACTGA  648

seq1  CGTGAGCGGCTTCCCAGTGGTCATGGGGAATCAACGTGGTCCACAGGTGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGCGGCTTCCCAGTGGTCATGGGGAATCAACGTGGTCCACAGGTGA  698

seq1  CTGAAAAATTGTGTCCATGAAAAACAGTCAGGAAGCCTAGATATGTGGAC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATTGTGTCCATGAAAAACAGTCAGGAAGCCTAGATATGTGGAC  748

seq1  CCCAGGGCCAGAAGGGAAACTATGACAGGTTTTGGGGAATGTAACACACA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCCAGAAGGGAAACTATGACAGGTTTTGGGGAATGTAACACACA  798

seq1  CGCAGAGTCAGCTCATTCTTCCTATCCTTTACCAGGCATGAGAACACCGT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAGTCAGCTCATTCTTCCTATCCTTTACCAGGCATGAGAACACCGT  848

seq1  ACAGCCGAACTTAGGACCTACCAAACGCTAACACCAATGCAATGGTGAGC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCGAACTTAGGACCTACCAAACGCTAACACCAATGCAATGGTGAGC  898

seq1  AGAAAGGCCTGTTAGGAAACTGTAATGGATGCCGCTAGAAGGAGCCGCGC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCCTGTTAGGAAACTGTAATGGATGCCGCTAGAAGGAGCCGCGC  948

seq1  TTGCATCGAGCATGAACAGGAAACAAATGCACAAAAGGCAAAGAGAAGAA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCGAGCATGAACAGGAAACAAATGCACAAAAGGCAAAGAGAAGAA  998

seq1  TGGCTGGGAGATGGGTCAGTGAATAAAGTACTTGTCAGGCAAGCACTGTC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGAGATGGGTCAGTGAATAAAGTACTTGTCAGGCAAGCACTGTC  1048

seq1  ACCTGACTTTGAGTCACAGAATTC  1056
      ||||||||||||||||||||||||
seq2  ACCTGACTTTGAGTCACAGAATTC  1072