BAC Information

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BAC

Clone NameB6Ng01-162C15
Chromosome7 (Build37)3 (Build37)
Map Location 76,179,744 - 76,180,92758,671,586 - 58,672,005
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162C15.bB6Ng01-162C15.g
ACCDH955072DH955073
length1,173397
definitionDH955072|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C15, 5' end.DH955073|Mus musculus domesticus DNA, BAC clone: B6Ng01-162C15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,179,744 - 76,180,927)(58,671,586 - 58,672,005)
sequence
gaattcagaaataaactatgctcatatatatatatatgtgtatatatata
tatacacatatatatattacaatactatatatacagtactacatactaag
tttttatatattatatatattaaatattatgcataaatgaattgttaatt
gaaatgaacaagagtttggaatttagaaaaaatcttggggtgggtaagga
aagagtgttgcatattaacatcaggggaaaagtaaaaacaggaagttgaa
gaaaattttgaagtcctttaaagaaaacagtcatctcagcagcaactatg
atgacctttaaaccagcagtcctcagccttcctagtgctgaaacccttga
atatagttcctcacattatggtgacccccaatcatcaaattatttcactg
caactccataactgtagttttgctactgttatgaatcatattgtaaatta
ctgatatgcagatatctgataggtaagccacaaagaggttgtggcccaca
ggttgagaactgctcatttaaatagttatcagaagagtagtaaacgcatg
ataaagaaaaattgtattgtgacatcaccaagaaattgagaagggaggga
agtgactgtgtatcttagaggagagagctgatgagtgttcaattcttacc
ttctggagcataaattctgcaattaagaaactgtaatgagaagttgtcat
ccgtaaatattgggaagatgtcagtagctataggtgaaggagttgagtgt
tggttctgaggaacaaggttttgtggatgaagagtgaagaaatactcatt
tttcctttaatggctttttcagagcatgtacattttgctgttatacagac
aagtgcttggtgacgttgaaataagataaacataaacatacacaaaagat
tggagtgaagcgcaaatgtattaacctttgttaattatattcattgtgta
aatacttgtttagaatgatcataacaagaagcaaaaaggatagagcctgc
agtcctggtgaagttctggttctctgtatgtgggaaggaaggcaactctc
attgactacttacgacgctgattccctgtttggaaaggcaatatgcttgc
tcgttcagtcagtagaggtctagaagtcttgtataccgaatgtacaagtt
ttcctcttgacttctgccaatga
ttagtttctgctctagctgagtcaaatgctcacacacaggctgtgaacca
attaaagaatggattgaggactggggagataagtcagtgcttgccgtgca
aacccaaggatctgagcaaaagccaggagttataatcccagcactaggga
ggaagacaatgaagaattcttacaacttgctacctactcagttccccaaa
tcagtgagttcctggtgagagactctgcttgaaaaaatatgatggagaac
aatcaaggccttttcattaatgtatacatgtgtgtatgtaaataaagaca
tacagagaaggaaggaaaacaagaagaatgggaaggaaggaaggaaggaa
ggaagaaggaagggaaggagggagggagacagggaggcaggaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_76179744_76180927
seq2: B6Ng01-162C15.b_42_1214

seq1  GAATTCAGAAATAAACTATGCTCATATATATATATATGTGTATATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATAAACTATGCTCATATATATATATATGTGTATATATATA  50

seq1  TATACACATATATATATTACAATACTATATATACAGTACTACATACTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATATATATATTACAATACTATATATACAGTACTACATACTAAG  100

seq1  TTTTTATATATTATATATATTAAATATTATGCATAAATGAATTGTTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATATTATATATATTAAATATTATGCATAAATGAATTGTTAATT  150

seq1  GAAATGAACAAGAGTTTGGAATTTAGAAAAAATCTTGGGGTGGGTAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAACAAGAGTTTGGAATTTAGAAAAAATCTTGGGGTGGGTAAGGA  200

seq1  AAGAGTGTTGCATATTAACATCAGGGGAAAAGTAAAAACAGGAAGTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTTGCATATTAACATCAGGGGAAAAGTAAAAACAGGAAGTTGAA  250

seq1  GAAAATTTTGAAGTCCTTTAAAGAAAACAGTCATCTCAGCAGCAACTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTTGAAGTCCTTTAAAGAAAACAGTCATCTCAGCAGCAACTATG  300

seq1  ATGACCTTTAAACCAGCAGTCCTCAGCCTTCCTAGTGCTGAAACCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTTAAACCAGCAGTCCTCAGCCTTCCTAGTGCTGAAACCCTTGA  350

seq1  ATATAGTTCCTCACATTATGGTGACCCCCAATCATCAAATTATTTCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTCCTCACATTATGGTGACCCCCAATCATCAAATTATTTCACTG  400

seq1  CAACTCCATAACTGTAGTTTTGCTACTGTTATGAATCATATTGTAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCATAACTGTAGTTTTGCTACTGTTATGAATCATATTGTAAATTA  450

seq1  CTGATATGCAGATATCTGATAGGTAAGCCACAAAGAGGTTGTGGCCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGCAGATATCTGATAGGTAAGCCACAAAGAGGTTGTGGCCCACA  500

seq1  GGTTGAGAACTGCTCATTTAAATAGTTATCAGAAGAGTAGTAAACGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGAACTGCTCATTTAAATAGTTATCAGAAGAGTAGTAAACGCATG  550

seq1  ATAAAGAAAAATTGTATTGTGACATCACCAAGAAATTGAGAAGGGAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAAATTGTATTGTGACATCACCAAGAAATTGAGAAGGGAGGGA  600

seq1  AGTGACTGTGTATCTTAGAGGAGAGAGCTGATGAGTGTTCAATTCTTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGTGTATCTTAGAGGAGAGAGCTGATGAGTGTTCAATTCTTACC  650

seq1  TTCTGGAGCATAAATTCTGCAATTAAGAAACTGTAATGAGAAGTTGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGCATAAATTCTGCAATTAAGAAACTGTAATGAGAAGTTGTCAT  700

seq1  CCGTAAATATTGGGAAGATGTCAGTAGCTATAGGTGAAGGAGTTGAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAAATATTGGGAAGATGTCAGTAGCTATAGGTGAAGGAGTTGAGTGT  750

seq1  TGGTTCTGAGGAACAAGGTTTTGTGGATGAAGAGTGAAGAAATACTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGAGGAACAAGGTTTTGTGGATGAAGAGTGAAGAAATACTCATT  800

seq1  TTTCCTTTAATGGCTTTTTCAGAGCATGTACATTTTGCTGTTATACAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTAATGGCTTTTTCAGAGCATGTACATTTTGCTGTTATACAGAC  850

seq1  AAGTGCTTGGTGACGTTGAAATAAGATAAACATAAACATACACAAAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTGGTGACGTTGAAATAAGATAAACATAAACATACACAAAAGAT  900

seq1  TGGAGTGAAGCGCAAATGTAATTAACCTTTGTTAAATTATTATTCATTGT  950
      ||||||||||||||||||| ||||||||||||| ||||| ||||||||||
seq2  TGGAGTGAAGCGCAAATGT-ATTAACCTTTGTT-AATTA-TATTCATTGT  947

seq1  GTAAATACTTGTTATTAGAATGATCATAACAAGAAGCAAAAAGGATAGAG  1000
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  GTAAATACTTGT--TTAGAATGATCATAACAAGAAGCAAAAAGGATAGAG  995

seq1  CCTGCAGTCCTGTGGAAGTTCTGGTTCTCTGTATGTGGGAAGGAAAGGCA  1050
      ||||||||||||  ||||||||||||||||||||||||||||| ||||||
seq2  CCTGCAGTCCTGGTGAAGTTCTGGTTCTCTGTATGTGGGAAGG-AAGGCA  1044

seq1  A-TCTCATTGACTACTGAGGACGCTGATTCCCCTGTTTGGAAAGGCAATA  1099
      | |||||||||||||| | |||||||||| ||||||||||||||||||| 
seq2  ACTCTCATTGACTACTTACGACGCTGATT-CCCTGTTTGGAAAGGCAAT-  1092

seq1  ATGTCTGCCTGCTCAGTCAGTAGAGGTCTAGGAAGCTTTGTATACAGAAG  1149
      |||  |||  | |||||||||||||||||| ||||  |||||||| ||| 
seq2  ATGCTTGCTCGTTCAGTCAGTAGAGGTCTA-GAAGTCTTGTATACCGAA-  1140

seq1  TGTACAAAGTTTTCTCTTTGACTTTCTGCCAATGA  1184
      ||||| ||||||||   ||||| ||||||||||||
seq2  TGTAC-AAGTTTTCCTCTTGAC-TTCTGCCAATGA  1173

seq1: chr3_58671586_58672005
seq2: B6Ng01-162C15.g_122_442

seq1  CAATTAAAGAATGGATACATTTAATACATTTAATAAACATGTAACAATTC  50
      ||||||||||||||    ||| |  ||  |    | | | ||        
seq2  CAATTAAAGAATGG----ATTGAGGAC--TGGGGAGATAAGT--------  36

seq1  CTGTGACTGC--TGCAAATGGAAAGA------CACA---TAGGAGGTCTA  89
      | |||  |||  ||||||   || ||      || |    |||||   ||
seq2  CAGTGCTTGCCGTGCAAACCCAAGGATCTGAGCAAAAGCCAGGAG--TTA  84

seq1  TCAACCAAACACAA--CACGTGCACAATTTACGGCTAAGATTTGCCATTT  137
      | | || | ||| |   | |   |||||    |   ||   || | | ||
seq2  TAATCCCAGCACTAGGGAGGAAGACAAT----GAAGAATTCTTACAACTT  130

seq1  GAACAAACCCTATCTATAAAATGACTCTGGGACAACCAGAGAAAACTGAC  187
      |        ||| ||        |||| |   |  ||    ||| | |  
seq2  G--------CTACCT--------ACTCAGTTCC--CC----AAATCAG--  156

seq1  TATGAG--CTTGGTATTAGATGATACTT-CATAATTGTTATCGATTACAT  234
        ||||  | ||||   |||   | |||  | || | | || ||  ||| 
seq2  --TGAGTTCCTGGTGAGAGACTCTGCTTGAAAAAATATGATGGAGAACAA  204

seq1  TCATTTTATGTGTGCTATTGTGGTTATTTTAAAGGCCTTATCTATTAGAA  284
      ||                             |||||||| || |||   |
seq2  TC-----------------------------AAGGCCTTTTC-ATT---A  221

seq1  ATG---AGATGGGTGGATG--GATGCAGGCATGCATGGATAAATGGATGG  329
      |||   | ||| ||| |||   ||  || ||| ||          ||  |
seq2  ATGTATACATGTGTGTATGTAAATAAAGACATACA----------GA--G  259

seq1  ACGGATGGATAGACAGGTGGATGGGTGTGGATGGGTGGGTAGAAGGAAGG  379
      | ||| ||| | |||                         ||||| | ||
seq2  AAGGAAGGA-AAACA-------------------------AGAAGAATGG  283

seq1  AAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA-GGAAGGA  420
         ||||||||||||||||||||||| ||||||| |||||||
seq2  ---GAAGGAAGGAAGGAAGGAAGGAA-GAAGGAAGGGAAGGA  321