BAC Information

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BAC

Clone NameB6Ng01-162D24
Chromosome7 (Build37)
Map Location 63,657,819 - 63,820,837
singlet/doubletdoublet
Overlap genep
Upstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2
Downstream geneLOC100040839, Gabrg3, Gabra5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D24.bB6Ng01-162D24.g
ACCDH955135DH955136
length1,1421,064
definitionDH955135|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D24, 5' end.DH955136|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,819,697 - 63,820,837)(63,657,819 - 63,658,909)
sequence
gaattcttgtaaattagcatggaaagataagataggagagtggcaaaggg
cttgaatagacactttacgacatcttcagaaaattgaactgcaggggaaa
ggtcagagggtataattatgggtccagaggctgagcgaatggaattcagc
attgactaaaagcagaaaccgaccaaataccacaaacagcagaacagaca
aaataactggcagactcatacaatgaaatattttgaaggaacaaaataaa
ctctgctatataacagctctatctgccaacagatgctgagtgagcttggc
ctggaaaataggaaagagacatatagtgcgcatccaatgcagacaaacca
acctatgttattagaaagtaggagctcccagaagacctggcaaatgaaaa
tgggcagttgtaagagggtgtgttagtgaaaatgcatcaggctgtacatt
tctagttttctatatgcacattgtaatttagacaaatattcattcaacta
ttacatcagcaggtttctatccaatttagaagcagtcaggtagcctgtat
tccattgcccctgaactgcaagatagatactgaggtgtagacactgaata
gcaagtgcagactgaaattattggacgaagagcaaaaacaattctattcc
cagtgttcttgaatgtaaggggacagttgtgacacagctccataccatgc
tgttaccaaagccaccagtagagatctttccagagacctctacccagaca
aaatcaattatggttttgatgaaaaaaataatttcatggtaaatcagagt
taagcagattgaatttattaaaaacagacaataatgtctttccaagagac
taaggcattcccaacagcaagggcgtgggcttttaagggaagattcacaa
ctgtctttacaatgggatacatatatagaatttgtggctttctaagcaca
ttgactaatgggtgtgatttcctctaaggactagagaagttttcttagta
acagagttgttaaaggggacttatgagggggagtttttcagatttaggta
gatcctttacattgctacctccctgtgtattgagtaacaatacttcactc
tttggcatctgtgattagagtggtctttcatttcatgccaac
gaattcttgcctgttgttctctcttgcctgttgttcctgtggaaatgctg
tcttgcaagtaagatcaccagtgatctccatgagaagacacatgcataat
tctggggaaaattaatacatgggcaattttatttttaaattttgtggcaa
agatgacttacaattagctctttgtcagttttctttttttaaaataacct
tgttgtgacattacccccaaaatagcagtataattcaagtttatttaaaa
cgattgtaattataatatattcagaatgcttataaaaataaataaatgca
tcagctgttaaacatgtaagaatattttatgtttcaatgattaaaaattg
gattatttttcttaggtcagaatttaaaataaagcagacactgtgagaag
aaaaaaaaagtaaagaaaaaaaaaaaagaaagaaaatgaacccctaaggc
acactgctttctgcctgacttctgaatgtcagcattggtgttcttttccc
tcaacacagtctctgagagaatcaggccgactgtcccctttctctttctt
ctagagttgctcttgtccctaactctgtagagggttctgggttgcatgag
gctctgcctctgctggagccctccttgggtgtatcagtgaagaagggaag
ataggcccaggaaaagcatattctccttctaaactagacctgggttgtat
tatgatatctctatttcataagaaacaagaactttgactccagttttgct
ttatagctgtaaacccactaaagtctattcttccctctgcttacaactga
aatctgggacaaaacagaaacttcaacagctcatggactctgaacaataa
gcaaagccaagtaggtgttggaggggagtagaaaccttgagtggctctct
tatgaatgggtctcctttcttccttcttcttcttcttcatcttcttcttc
ttcttctctctcttcttcttctaatctcttgactgtccaggtagcctcct
atcatggggtgtcatggtgaatgatggacagcatttgtcttgaggagcta
gacaggaatgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_63819697_63820837
seq2: B6Ng01-162D24.b_46_1187 (reverse)

seq1  GTTGGGATGAAATGATAAAGA-CACTCTAATCACAGATGCCAAAGAGTGA  49
      ||||| ||||||||  ||||| ||||||||||||||||||||||||||||
seq2  GTTGGCATGAAATG--AAAGACCACTCTAATCACAGATGCCAAAGAGTGA  48

seq1  AGTATGTTTACTCGATACACAGGGATGTAGCAATGTAAGGATTCTTACCT  99
      |||||  |||||| ||||||||||| |||||||||||| |  || |||||
seq2  AGTATTGTTACTCAATACACAGGGAGGTAGCAATGTAAAGGATC-TACCT  97

seq1  AAATCTGAAAAACT-CCCCTCATAAGTCCCCTTT-ACAACTCTGTTTACT  147
      |||||||||||||| ||||||||||||||||||| ||||||||| |||||
seq2  AAATCTGAAAAACTCCCCCTCATAAGTCCCCTTTAACAACTCTG-TTACT  146

seq1  AAGAAAACTTCTCTAGTCCTTAGAGGAAATCACACCCATTAGTCAATGTT  197
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGAAAACTTCTCTAGTCCTTAGAGGAAATCACACCCATTAGTCAATG-T  195

seq1  GCTTAGAAAGCCACAAATTCTATATATGTAT-CCATTGTAAAGACAGTTG  246
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTTAGAAAGCCACAAATTCTATATATGTATCCCATTGTAAAGACAGTTG  245

seq1  TGAATC-TCCCTTAAAAGCCCACGCCCTTGCTGTTGGGAATGCCTTAGTC  295
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTCCCTTAAAAGCCCACGCCCTTGCTGTTGGGAATGCCTTAGTC  295

seq1  TCTTGG-AAGACATTATTGTCTGTTTTTAATAAATTCAATCTGCTTAACT  344
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAAGACATTATTGTCTGTTTTTAATAAATTCAATCTGCTTAACT  345

seq1  CTGATTTACCATGAAATTATTTTTTTCATCAAAACCATAATTGATTTTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTACCATGAAATTATTTTTTTCATCAAAACCATAATTGATTTTGT  395

seq1  CTGGGTAGAGGTCTCTGGAAAGATCTCTACTGGTGGCTTTGGTAACAGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGAGGTCTCTGGAAAGATCTCTACTGGTGGCTTTGGTAACAGCA  445

seq1  TGGTATGGAGCTGTGTCACAACTGTCCCCTTACATTCAAGAACACTGGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGGAGCTGTGTCACAACTGTCCCCTTACATTCAAGAACACTGGGA  495

seq1  ATAGAATTGTTTTTGCTCTTCGTCCAATAATTTCAGTCTGCACTTGCTAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTGTTTTTGCTCTTCGTCCAATAATTTCAGTCTGCACTTGCTAT  545

seq1  TCAGTGTCTACACCTCAGTATCTATCTTGCAGTTCAGGGGCAATGGAATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTACACCTCAGTATCTATCTTGCAGTTCAGGGGCAATGGAATA  595

seq1  CAGGCTACCTGACTGCTTCTAAATTGGATAGAAACCTGCTGATGTAATAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTACCTGACTGCTTCTAAATTGGATAGAAACCTGCTGATGTAATAG  645

seq1  TTGAATGAATATTTGTCTAAATTACAATGTGCATATAGAAAACTAGAAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAATATTTGTCTAAATTACAATGTGCATATAGAAAACTAGAAAT  695

seq1  GTACAGCCTGATGCATTTTCACTAACACACCCTCTTACAACTGCCCATTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCCTGATGCATTTTCACTAACACACCCTCTTACAACTGCCCATTT  745

seq1  TCATTTGCCAGGTCTTCTGGGAGCTCCTACTTTCTAATAACATAGGTTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCCAGGTCTTCTGGGAGCTCCTACTTTCTAATAACATAGGTTGG  795

seq1  TTTGTCTGCATTGGATGCGCACTATATGTCTCTTTCCTATTTTCCAGGCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGCATTGGATGCGCACTATATGTCTCTTTCCTATTTTCCAGGCC  845

seq1  AAGCTCACTCAGCATCTGTTGGCAGATAGAGCTGTTATATAGCAGAGTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACTCAGCATCTGTTGGCAGATAGAGCTGTTATATAGCAGAGTTT  895

seq1  ATTTTGTTCCTTCAAAATATTTCATTGTATGAGTCTGCCAGTTATTTTGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTCCTTCAAAATATTTCATTGTATGAGTCTGCCAGTTATTTTGT  945

seq1  CTGTTCTGCTGTTTGTGGTATTTGGTCGGTTTCTGCTTTTAGTCAATGCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGCTGTTTGTGGTATTTGGTCGGTTTCTGCTTTTAGTCAATGCT  995

seq1  GAATTCCATTCGCTCAGCCTCTGGACCCATAATTATACCCTCTGACCTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCGCTCAGCCTCTGGACCCATAATTATACCCTCTGACCTTT  1045

seq1  CCCCTGCAGTTCAATTTTCTGAAGATGTCGTAAAGTGTCTATTCAAGCCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCAGTTCAATTTTCTGAAGATGTCGTAAAGTGTCTATTCAAGCCC  1095

seq1  TTTGCCACTCTCCTATCTTATCTTTCCATGCTAATTTACAAGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACTCTCCTATCTTATCTTTCCATGCTAATTTACAAGAATTC  1142

seq1: chr7_63657819_63658909
seq2: B6Ng01-162D24.g_68_1131

seq1  GAATTCTTGCCTGTTGTTCTCTCTTGCCTGTTGTTCCTGTGGAAATGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTGTTGTTCTCTCTTGCCTGTTGTTCCTGTGGAAATGCTG  50

seq1  TCTTGCAAGTAAGATCACCAGTGATCTCCATGAGAAGACACATGCATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAAGTAAGATCACCAGTGATCTCCATGAGAAGACACATGCATAAT  100

seq1  TCTGGGGAAAATTAATACATGGGCAATTTTATTTTTAAATTTTGTGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAAAATTAATACATGGGCAATTTTATTTTTAAATTTTGTGGCAA  150

seq1  AGATGACTTACAATTAGCTCTTTGTCAGTTTTCTTTTTTTAAAATAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACTTACAATTAGCTCTTTGTCAGTTTTCTTTTTTTAAAATAACCT  200

seq1  TGTTGTGACATTACCCCCAAAATAGCAGTATAATTCAAGTTTATTTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGACATTACCCCCAAAATAGCAGTATAATTCAAGTTTATTTAAAA  250

seq1  CGATTGTAATTATAATATATTCAGAATGCTTATAAAAATAAATAAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTGTAATTATAATATATTCAGAATGCTTATAAAAATAAATAAATGCA  300

seq1  TCAGCTGTTAAACATGTAAGAATATTTTATGTTTCAATGATTAAAAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTTAAACATGTAAGAATATTTTATGTTTCAATGATTAAAAATTG  350

seq1  GATTATTTTTCTTAGGTCAGAATTTAAAATAAAGCAGACACTGTGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTTCTTAGGTCAGAATTTAAAATAAAGCAGACACTGTGAGAAG  400

seq1  AAAAAAAAAGTAAAGAAAAAAAAAAAAGAAAGAAAATGAACCCCTAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTAAAGAAAAAAAAAAAAGAAAGAAAATGAACCCCTAAGGC  450

seq1  ACACTGCTTTCTGCCTGACTTCTGAATGTCAGCATTGGTGTTCTTTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTTTCTGCCTGACTTCTGAATGTCAGCATTGGTGTTCTTTTCCC  500

seq1  TCAACACAGTCTCTGAGAGAATCAGGCCGACTGTCCCCTTTCTCTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAGTCTCTGAGAGAATCAGGCCGACTGTCCCCTTTCTCTTTCTT  550

seq1  CTAGAGTTGCTCTTGTCCCTAACTCTGTAGAGGGTTCTGGGTTGCATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTTGCTCTTGTCCCTAACTCTGTAGAGGGTTCTGGGTTGCATGAG  600

seq1  GCTCTGCCTCTGCTGGAGCCCTCCTTGGGTGTATCAGTGAAGAAGGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTCTGCTGGAGCCCTCCTTGGGTGTATCAGTGAAGAAGGGAAG  650

seq1  ATAGGCCCAGGAAAAGCATATTCTCCTTCTAAACTAGACCTGGGTTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCCCAGGAAAAGCATATTCTCCTTCTAAACTAGACCTGGGTTGTAT  700

seq1  TATGATATCTCTATTTCATAAGAAACAAGAACTTTGACTCCAGTTTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATCTCTATTTCATAAGAAACAAGAACTTTGACTCCAGTTTTGCT  750

seq1  TTATAGCTGTAAACCCACTAAAGTCTATTCTTCCCTCTGCTTACAACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCTGTAAACCCACTAAAGTCTATTCTTCCCTCTGCTTACAACTGA  800

seq1  AATCT-GGACAAAACAGAAACTTCAACAGCTCATGGACTCTGAACAATAA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGACAAAACAGAAACTTCAACAGCTCATGGACTCTGAACAATAA  850

seq1  GCAAAGCCAAGTAGGTGTTGGAGGGGAGTAGAAACCTTGAGTGGCTCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCCAAGTAGGTGTTGGAGGGGAGTAGAAACCTTGAGTGGCTCTCT  900

seq1  TATGAATGGGTCTCCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  949
      ||||||||||||||                 ||||||| |||   |||||
seq2  TATGAATGGGTCTC-----------------CTTTCTTCCTT--CTTCTT  931

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTAATCT  999
         |||||  | |  ||| |||||  | ||| || |||||  | ||||||
seq2  --CTTCTTCATCTTCTTC-TTCTTCTTCTCTCTC-TTCTTCTTCTAATCT  977

seq1  CTTTGACTGTCCCAGGGTAGGCCTCTATCATGGGGTGTCATGGTGATATT  1049
      | ||||||||||   ||||| |  |||||||||||||||||||||  | |
seq2  C-TTGACTGTCC--AGGTAGCCTCCTATCATGGGGTGTCATGGTG--AAT  1022

seq1  GATTGACAGCATTTGTCTTGAGGAGCCAGACAGGATTGTCTG  1091
      ||| |||||||||||||||||||||| |||||||| ||||||
seq2  GATGGACAGCATTTGTCTTGAGGAGCTAGACAGGAATGTCTG  1064