BAC Information

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BAC

Clone NameB6Ng01-162E12
Chromosome7 (Build37)
Map Location 23,969,406 - 23,970,481
singlet/doubletsinglet
Overlap geneLOC667616
Upstream geneEG667469, EG667472, EG667094, LOC100043625, LOC100043626, LOC100043043, LOC100043048, LOC100043632, EG667485, V1rd14, LOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665
Downstream geneLOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162E12.bB6Ng01-162E12.g
ACCDH955159DH955160
length8131,079
definitionDH955159|Mus musculus domesticus DNA, BAC clone: B6Ng01-162E12, 5' end.DH955160|Mus musculus domesticus DNA, BAC clone: B6Ng01-162E12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaactgaggaatctcaaatggctgagaaacacctaaagaaatg
ctcaaagtccttagtgatcagagaaatacaaatcaaaaggaccctgagat
tccaccttacaccaatcagaatggctaagatcaaaacctcaggtgacaac
acatgttggagaggatgtggagaaagaaaaacactcctccatttctggtg
ggattgcaaactagtacaaccactctggaaatcaatctggaggttcctca
gaaaattggaaaaagatctacctaaagactctgctataccactcttgggc
atgtacccaaaagatgccccaccataccacaggggcatgtgttccactgt
gttcatagctgccttatttgtgatagccagaagctggaaacaacctatat
gtcccatgacagaaaaattgattcagaaaatatggttaatttacacaatg
gaatactactgagctattaagaatgaggacatcctgacttttgcaggcaa
atggatggaactagaaaatatcatcctgagtgaggtaactcagacccaaa
aggacatgcatggcatgtactcactaataagtgataagtggatattagca
aacacacacacacacacacacacacacacacacacacacacacacacaca
atacataagatacagtccagagaattcaaaaggctcaacaagctcaaatg
cctaagtgaggacacctcagtcccacttgggagagagaaaaaagcaatca
caagtgtgaagggagggagggacctgggatggaaagtggacagggttggg
ggatgtgggggga
gaattctgaggaggtagccctagcaagtgaactgctgagatgagtaaaca
ggtcattgtcagtcttgagtgcccaaggtgctcccattaccagcattgtt
gatttcattgccttaataacatgagaggccttttcacctgccatggccac
agcttctacaaaggctgagcaagtatctaccacaatatgtacatacctat
gattaccaaaggctgggtaatgagtgacacctatttgccaggttgtaatg
gggagcagacctctagggttaagtcctgatctgccaaggggacccagtgg
tgtaaggtatgcaagtggcacaggaccttgcaaggtgtttacattgggac
ataggcaattcgagcaagggcttatgtaaattctgaggagaaaggtgaaa
ttgctggtgtaacattctggcttgttgtaggattccatgtctacagtcat
aatcagggcatcagttctctcatttccttctgctagtatgccaggcagtt
tagaatgtgatcttatgtgtgagatgaaccagggatgtgccctaatctca
agagcttcctggatagattgcatgcagacatgtttagggttgtgttggtc
aactctatgtcactactgtgtttgtatgcagtctcctcctctctatattg
ttcctttaaagttagatgcattatcttaccctgttgtgtgagtggggagg
ataggtgacagccccaaacaagtctggtccccaatgtataggattctcag
aattcttttggccttttcccagtagacattaactgcatctctaccctcag
ctataacatcagattcccactgacattgctacatgtctgtctaagaactg
caaacatgaaatgacctttagctggctacccttaatctgtttggggagtc
agtttgccacatttatgtgctgtggattgtcttgactaacttttttgtaa
tgagtaaaaccaaaaagtgctggccaggtttatccgttgtttttttattt
atgtgtacaaatgttttgccctagtatgtgcactgttaacatgtggcata
cagcacccatgtgttgcagagagttgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_23969406_23970481
seq2: B6Ng01-162E12.g_68_1146

seq1  GAATTCTGAGGAGGTAGCCCTAGCAAGTGAACTGCTGAGATGAGTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGAGGTAGCCCTAGCAAGTGAACTGCTGAGATGAGTAAACA  50

seq1  GGTCATTGTCAGTCTTGAGTGCCCAAGGTGCTCCCATTACCAGCATTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTGTCAGTCTTGAGTGCCCAAGGTGCTCCCATTACCAGCATTGTT  100

seq1  GATTTCATTGCCTTAATAACATGAGAGGCCTTTTCACCTGCCATGGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATTGCCTTAATAACATGAGAGGCCTTTTCACCTGCCATGGCCAC  150

seq1  AGCTTCTACAAAGGCTGAGCAAGTATCTACCACAATATGTACATACCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTACAAAGGCTGAGCAAGTATCTACCACAATATGTACATACCTAT  200

seq1  GATTACCAAAGGCTGGGTAATGAGTGACACCTATTTGCCAGGTTGTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACCAAAGGCTGGGTAATGAGTGACACCTATTTGCCAGGTTGTAATG  250

seq1  GGGAGCAGACCTCTAGGGTTAAGTCCTGATCTGCCAAGGGGACCCAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGACCTCTAGGGTTAAGTCCTGATCTGCCAAGGGGACCCAGTGG  300

seq1  TGTAAGGTATGCAAGTGGCACAGGACCTTGCAAGGTGTTTACATTGGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGTATGCAAGTGGCACAGGACCTTGCAAGGTGTTTACATTGGGAC  350

seq1  ATAGGCAATTCGAGCAAGGGCTTATGTAAATTCTGAGGAGAAAGGTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAATTCGAGCAAGGGCTTATGTAAATTCTGAGGAGAAAGGTGAAA  400

seq1  TTGCTGGTGTAACATTCTGGCTTGTTGTAGGATTCCATGTCTACAGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTGTAACATTCTGGCTTGTTGTAGGATTCCATGTCTACAGTCAT  450

seq1  AATCAGGGCATCAGTTCTCTCATTTCCTTCTGCTAGTATGCCAGGCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGCATCAGTTCTCTCATTTCCTTCTGCTAGTATGCCAGGCAGTT  500

seq1  TAGAATGTGATCTTATGTGTGAGATGAACCAGGGATGTGCCCTAATCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTGATCTTATGTGTGAGATGAACCAGGGATGTGCCCTAATCTCA  550

seq1  AGAGCTTCCTGGATAGATTGCATGCAGACATGTTTAGGGTTGTGTTGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTCCTGGATAGATTGCATGCAGACATGTTTAGGGTTGTGTTGGTC  600

seq1  AACTCTATGTCACTACTGTGTTTGTATGCAGTCTCCTCCTCTCTATATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATGTCACTACTGTGTTTGTATGCAGTCTCCTCCTCTCTATATTG  650

seq1  TTCC-TTAAAGTTAGATGCATTATCTTACCCTGTTGTGTGAGTGGGGAGG  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTAAAGTTAGATGCATTATCTTACCCTGTTGTGTGAGTGGGGAGG  700

seq1  ATAGGTGACAGCCCCAAACAAGTCTGGTCCCCAATGTATAGGATTCTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGACAGCCCCAAACAAGTCTGGTCCCCAATGTATAGGATTCTCAG  750

seq1  AATTC-TCTGGCCTTTTCCCAGTAGACATTAACTGCATCTCTACCCTCAA  798
      ||||| | |||||||||||||||||||||||||||||||||||||||| |
seq2  AATTCTTTTGGCCTTTTCCCAGTAGACATTAACTGCATCTCTACCCTC-A  799

seq1  GCTATAACATCAGAATCCCACTGACATTGCTACATGTCTGTCTAAGAACT  848
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCTATAACATCAGATTCCCACTGACATTGCTACATGTCTGTCTAAGAACT  849

seq1  GCAAACATGAAATGACC-TTAGCTGGCTACCCTTAATCTGTTTGGGGAGT  897
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCAAACATGAAATGACCTTTAGCTGGCTACCCTTAATCTGTTTGGGGAGT  899

seq1  CAGTTTGCCACATTTATGTGCTGT-GAATGTCTTGACTTAACTTTTTGTA  946
      |||||||||||||||||||||||| || ||||||||| |||||||||   
seq2  CAGTTTGCCACATTTATGTGCTGTGGATTGTCTTGAC-TAACTTTTTTGT  948

seq1  AATGAGTAGAACC-AAAAGTGCTGGCAGGTTTTATCGTTTGTTTTTTTTA  995
      |||||||| |||| ||||||||||||  | ||||||  ||||||||||  
seq2  AATGAGTAAAACCAAAAAGTGCTGGCCAGGTTTATCCGTTGTTTTTTT--  996

seq1  TTTTATGTGTACAAATGTTTTG-CCTAGCTATGTGCA-TGTATAACATGT  1043
       ||||||||||||||||||||| ||||| |||||||| ||| ||||||||
seq2  ATTTATGTGTACAAATGTTTTGCCCTAG-TATGTGCACTGT-TAACATGT  1044

seq1  -GCATACAGCACCCATG-GTGGCCAGAGAG-TGTGT  1076
       |||||||||||||||| || | ||||||| |||||
seq2  GGCATACAGCACCCATGTGTTG-CAGAGAGTTGTGT  1079