BAC Information

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BAC

Clone NameB6Ng01-163C03
ChromosomeY (Build37)7 (Build37)
Map Location 1,120,576 - 1,121,025139,280,154 - 139,281,273
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163C03.bB6Ng01-163C03.g
ACCDH955795DH955796
length8711,112
definitionDH955795|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C03, 5' end.DH955796|Mus musculus domesticus DNA, BAC clone: B6Ng01-163C03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,576 - 1,121,025)(139,280,154 - 139,281,273)
sequence
gaattcatcattttttttctttttttttcttaaccattttttattaggta
tttagctcatttacatttccaatgctataccaaaagtcccccatagccac
ccacccccactcccctacccacccactccccctttttggccctggcattc
ccctgtactggggcatataaagtttgcgtgtccaatgggcctctctttcc
agtgatggccgactaggccatcttttgatacatatgcagctagagtcaag
agctccggggtactggttagttcataatgttgttccacctatagggttgc
agatccctttagctccttggctactttctctagctcctccattgggagcc
ctgtgatccatccattagctgactgtgagcatccacttctgtgtttgcta
ggccccggcatattctcacaagagacagctacatctgggtcctttcgata
aaatcttgctgagtggtacaccattgtgtaaatgtaccacattttctgta
tccattcctctgttttagaacatctgggttctttccagcttctgcctatt
ataaataaggttgctatgaacatagtggagcatgtgtccttgttaccagt
tggaacatcttctgggtatatgcccaggagaggtattgctggatctttca
ggtagtactatgtccagttttctgagggaccgcctgactgatttccagag
tggttgtaacagcttgtatcccccaccaccaaatgaaggagtgttcctct
ttctccagatcctaccaacatctgctgtcactcgagtttttgattttagc
cattctgactgtgtgaggagaattcaagttgttcgattgcatttcccgat
gactagtagttgaacatttct
gaattcaaagttctgccatccccagctgcacagtgagttccaagccagtt
tggttacatgaagccccagttcaaaggaaaaaaaaaaggaaaaagaagca
acacagtttctggtaagcatacaaaacacatgaatgttcatggatatcca
agcttttgaaaataaattgtctccaaatatatacattatgttcccagtag
ccattggccatgcatgtcaatgcatgctcagttagtaactgagccacgtt
ctacaaactgcatcggctctcgcctgcttccattttctgcctgttctttt
aggtaaaagtacaggaacatctcgacgaagcctgtagagtccaatatcca
ctctggtattcagaatgtcgtggccgctgacaattctgtgccttagtttc
tttaatgataaattggtgctgacatcttctctggccttaaaatagtcttg
agcagatccagcagagaattctacctcattatctaaattgcttagagtga
gacaggtcactctgtgctatagaaagctctcctatgcatttagcaggttt
agtggcattcttgtcccctattcaccaggtccatcccccctcaagtgttg
cacacttcccagcctccacactcacgttggtctctagatgtcatcagttg
tcccttgaggagcacgccgcccccagcaaagcaccattgctgtgcatata
gtcagggtctctttccagttgaacgcagttggcagtacctgcccacactc
ctgctgtcacagaggaagctgacatcctgcacaggatgggaatgcactct
cgtggtcagaagagcacactgaaccttgggcttgaacttgaaagagtttt
tagaagtctccagtgtctgacattacgacctgttggttcttgccagttgg
gctgactctgggtaaaaatagaccatgcctctccaggaacccagcttctg
actgtgtgaagagccaactgtttgagaaataccagaaatttaatcacgtt
agtggatcatgaagcaggccctgatttgtcaggggagatgaatttggcag
tgttatttgaacctctaatgttctcctaaaaagagagctgggtgatgtga
tagggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120576_1121025
seq2: B6Ng01-163C03.b_53_507

seq1  TTTTTTTTAATTTTTTTTT-----CCATTTTTTATTAGGTATTTAACTCA  45
       |||||||  |||||||||     ||||||||||||||||||||| ||||
seq2  -TTTTTTTTCTTTTTTTTTCTTAACCATTTTTTATTAGGTATTTAGCTCA  49

seq1  TTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCA  95
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTACATTTCCAATGCTATACCAAAAGTCCCCCATAGCCACCCACCCCCA  99

seq1  CTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACT  145
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  CTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCCTGTACT  149

seq1  GGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGC  195
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  GGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGC  199

seq1  CGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGG  245
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGG  249

seq1  GTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTT  295
      ||||||||||| |||||| ||||||||||||||||||||| |||||||||
seq2  GTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTT  299

seq1  TAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCC  345
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCC  349

seq1  ATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGC  395
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGC  399

seq1  ATAGTCTCACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAATCTTGC  445
      ||| ||||||||||||||||||||||||  ||||||| ||||||||||||
seq2  ATATTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGC  449

seq1  T-AGTG  450
      | ||||
seq2  TGAGTG  455

seq1: chr7_139280154_139281273
seq2: B6Ng01-163C03.g_68_1178 (reverse)

seq1  -CCCCACCCCATCACATCCCCCAGCCTCTCTCTTAAAGAGAACATTAGA-  48
       |||| ||| |||||||| ||||| |||||| || | |||||||||||| 
seq2  CCCCCCCCCTATCACATCACCCAG-CTCTCTTTTTAGGAGAACATTAGAG  49

seq1  GTTCAAATAAACACTGCAAAATTCATCCTCACCTGACAAATCAGGGCCTG  98
      |||||||| |||||||| |||||||| ||| |||||||||||||||||||
seq2  GTTCAAAT-AACACTGCCAAATTCAT-CTCCCCTGACAAATCAGGGCCTG  97

seq1  CCTTCATGATCCACTTACCGTGATTAAAATTTCCTGGTATTTCTCAAAAC  148
       ||||||||||||| || ||||||||||  || |||||||||||| ||||
seq2  -CTTCATGATCCAC-TAACGTGATTAAA--TTTCTGGTATTTCTC-AAAC  142

seq1  AGTTGGCTCCTTCACACAGTCAGAAGCTGGGTTCCTGGAAGAGGCATGGT  198
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  AGTTGGCT-CTTCACACAGTCAGAAGCTGGGTTCCTGG-AGAGGCATGGT  190

seq1  CTATTTTTTACCCAGAGTCAGCCCAACTGGCAAGAACCAACAGGTCGTAA  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTA-TTTTTACCCAGAGTCAGCCCAACTGGCAAGAACCAACAGGTCGTAA  239

seq1  TGTCAGACACTGGAGACTTCTAAAAACTCTTTCAAGTTCAAGCCCAAGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGACACTGGAGACTTCTAAAAACTCTTTCAAGTTCAAGCCCAAGGT  289

seq1  TCAGTGTGCTCTTCTGACCACGAGAGTGCATTCCCATCCTGTGCAGGATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGCTCTTCTGACCACGAGAGTGCATTCCCATCCTGTGCAGGATG  339

seq1  TCAGCTTCCTCTGTGACAGCAGGAGTGTGGGCAGGTACTGCCAACTGCGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCCTCTGTGACAGCAGGAGTGTGGGCAGGTACTGCCAACTGCGT  389

seq1  TCAACTGGAAAGAGACCCTGACTATATGCACAGCAATGGTGCTTTGCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGGAAAGAGACCCTGACTATATGCACAGCAATGGTGCTTTGCTGG  439

seq1  GGGCGGCGTGCTCCTCAAGGGACAACTGATGACATCTAGAGACCAACGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGCGTGCTCCTCAAGGGACAACTGATGACATCTAGAGACCAACGTG  489

seq1  AGTGTGGAGGCTGGGAAGTGTGCAACACTTGAGGGGGGATGGACCTGGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAGGCTGGGAAGTGTGCAACACTTGAGGGGGGATGGACCTGGTG  539

seq1  AATAGGGGACAAGAATGCCACTAAACCTGCTAAATGCATAGGAGAGCTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGGACAAGAATGCCACTAAACCTGCTAAATGCATAGGAGAGCTTT  589

seq1  CTATAGCACAGAGTGACCTGTCTCACTCTAAGCAATTTAGATAATGAGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCACAGAGTGACCTGTCTCACTCTAAGCAATTTAGATAATGAGGT  639

seq1  AGAATTCTCTGCTGGATCTGCTCAAGACTATTTTAAGGCCAGAGAAGATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTCTGCTGGATCTGCTCAAGACTATTTTAAGGCCAGAGAAGATG  689

seq1  TCAGCACCAATTTATCATTAAAGAAACTAAGGCACAGAATTGTCAGCGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCAATTTATCATTAAAGAAACTAAGGCACAGAATTGTCAGCGGC  739

seq1  CACGACATTCTGAATACCAGAGTGGATATTGGACTCTACAGGCTTCGTCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGACATTCTGAATACCAGAGTGGATATTGGACTCTACAGGCTTCGTCG  789

seq1  AGATGTTCCTGTACTTTTACCTAAAAGAACAGGCAGAAAATGGAAGCAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTCCTGTACTTTTACCTAAAAGAACAGGCAGAAAATGGAAGCAGG  839

seq1  CGAGAGCCGATGCAGTTTGTAGAACGTGGCTCAGTTACTAACTGAGCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGCCGATGCAGTTTGTAGAACGTGGCTCAGTTACTAACTGAGCATG  889

seq1  CATTGACATGCATGGCCAATGGCTACTGGGAACATAATGTATATATTTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACATGCATGGCCAATGGCTACTGGGAACATAATGTATATATTTGG  939

seq1  AGACAATTTATTTTCAAAAGCTTGGATATCCATGAACATTCATGTGTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATTTATTTTCAAAAGCTTGGATATCCATGAACATTCATGTGTTTT  989

seq1  GTATGCTTACCAGAAACTGTGTTGCTTCTTTTTCCTTTTTTTTTTCCTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTTACCAGAAACTGTGTTGCTTCTTTTTCCTTTTTTTTTTCCTTT  1039

seq1  GAACTGGGGCTTCATGTAACCAAACTGGCTTGGAACTCACTGTGCAGCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGGCTTCATGTAACCAAACTGGCTTGGAACTCACTGTGCAGCTG  1089

seq1  GGGATGGCAGAACTTTGAATTC  1120
      ||||||||||||||||||||||
seq2  GGGATGGCAGAACTTTGAATTC  1111