BAC Information

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BAC

Clone NameB6Ng01-163F03
Chromosome7 (Build37)
Map Location 95,436,678 - 95,536,785
singlet/doubletdoublet
Overlap geneCtsc, LOC100039756
Upstream geneNox4, Tyr, Grm5
Downstream geneRab38, LOC100039924, LOC666598, EG621562, Tmem135, LOC100039969
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163F03.bB6Ng01-163F03.g
ACCDH955939DH955940
length1,1051,202
definitionDH955939|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F03, 5' end.DH955940|Mus musculus domesticus DNA, BAC clone: B6Ng01-163F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,436,678 - 95,437,811)(95,535,543 - 95,536,785)
sequence
gaattctgccctaaatctttcaacctgtcttctacttttttagagagaca
tctaccagtagaaaagttaaccttagtctgtttcatatctggggtatata
tcctagtacttaggcaaacagccaagcttcatgaggaccacatttaaatg
tgtatgagacacgtagtaggggtctaagatgctagaatttagcttgttgc
ttcaggatactttaaaatcacaatagttttatagagaggcagtcactttc
ggatgcatgtgctttgcaagcatgttgcctgcatgcgtaattctcttttt
aaagcattgaactcaatagcaattttatgcgaatgtctttagtaatttaa
aactaccaacacctaatttattagtgctggtattgctttttttctttttt
taaattaacaaaggctactatgataaagtgttaaaaggtggtatgatctt
tgtttcttgtaaccctagtttttgttttgtagttattaaatagatcgtct
gttgagaggctcttttaaaaccacagccaagaacagactttggcttaaga
gacaaacagttggatctacctctagcagctagcagaggccatggcagcta
caatcccttctggaatctgtttgcatgtaaaatgcagaggagtcctggtg
acctaccttcaaggcaactgccctcctgaaggatttcttggaaaacagta
atcaccactgtggaatgtgaaccaccagaaactgcaaagaataaaggaaa
aacattgtggaagagatgaagcctcagggggcttcagcattcagtgtttt
cataaggggacaatttataacacatcgcatggttttttgttttttctgtt
tgtttttccttttgttttgttttgtttttccttttcctatttgaatactg
ttgtgctgaaatagtttctccaaactggacagaatttggattttgatttt
gtgacctattcttttttctgtgtttgtcacattgaaaatttactcacagt
taatttgttcttctgctgctcacttttaaaatacttgagataccccaaag
tagagcttgagctggcatggctgagactatattacttgagagatgtgctg
tggag
gaattcaagtcagatgaagagccaccaaccaattaaaaacaccatttgga
actcatacaacgaagaataaagtactgggatggttgaaacattgaataac
attattcctttaattaaagcaccattgttggagctagtgaaatgactgga
taggtaagaatgcttgtgtaccacttgaagccccagaacacatatagcta
ttgcactattgaggatggagacaagaaaatctctgtctaaaaggaacaag
gaagagagtgatggagtaggtgctagctattctcctctgctgcctcatat
atgtatataatgcacatgtacacacacacacacacacacacacacacaca
cacacacacaaattaatgttttagaaaaacactatttcatatttctttga
tttattttcttttttctttttctctctagcagaaaaggctttttctttat
taaggaaaagtctacactttccctatattccttttaaaatgttttattct
tctctcatatattacatcctgaccacagtttcccttcccttgcctcctca
tagcctctcacatccccacacactacttcccctccccctcaactttctaa
tgctactttattctgtgacagccactctgcatcatttaaacacttgaaat
cttatatgtttgatactttcatatcggttatattcctcactaactctttt
cctaaatataagttcagaaccttaaccagttctatggttgtagctcaatg
aatatttattaatcttattatggaactacagaatagattacatatttttc
caagttgcctgtgaagattatagtggcatattaaaagtttaagttgtaga
aacacatgaaaggttacatgcaataagtttcagtgtcagtatgaacacca
gaaaaaaaaaaccaacaccagaaaaaaaaaaataataatagaaaaatcaa
ggagcacagcaactccatagaatattctgcccgaggtgaacagtcagagt
tgtatttcctctctctattatagttttttttttaacttaggctcagctta
ttgataaatacaaatgtctaccctcaaagtctcagacaccagaattaaga
attcctgtaaataattacccattctgtcatttgggtctggaccatgctag
gatagatagacctctctagtcagcataggtccctcttgatacgataagag
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_95436678_95437811
seq2: B6Ng01-163F03.b_46_1150

seq1  GAATTCTGCCCTAAATCTTTCAACCTGTCTTCTACTTTTTTAGAGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTAAATCTTTCAACCTGTCTTCTACTTTTTTAGAGAGACA  50

seq1  TCTACCAGTAGAAAAGTTAACCTTAGTCTGTTTCATATCTGGGGTATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAGTAGAAAAGTTAACCTTAGTCTGTTTCATATCTGGGGTATATA  100

seq1  TCCTAGTACTTAGGCAAACAGCCAAGCTTCATGAGGACCACATTTAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTACTTAGGCAAACAGCCAAGCTTCATGAGGACCACATTTAAATG  150

seq1  TGTATGAGACACGTAGTAGGGGTCTAAGATGCTAGAATTTAGCTTGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGACACGTAGTAGGGGTCTAAGATGCTAGAATTTAGCTTGTTGC  200

seq1  TTCAGGATACTTTAAAATCACAATAGTTTTATAGAGAGGCAGTCACTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATACTTTAAAATCACAATAGTTTTATAGAGAGGCAGTCACTTTC  250

seq1  GGATGCATGTGCTTTGCAAGCATGTTGCCTGCATGCGTAATTCTCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCATGTGCTTTGCAAGCATGTTGCCTGCATGCGTAATTCTCTTTTT  300

seq1  AAAGCATTGAACTCAATAGCAATTTTATGCGAATGTCTTTAGTAATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTGAACTCAATAGCAATTTTATGCGAATGTCTTTAGTAATTTAA  350

seq1  AACTACCAACACCTAATTTATTAGTGCTGGTATTGCTTTTTTTCTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCAACACCTAATTTATTAGTGCTGGTATTGCTTTTTTTCTTTTTT  400

seq1  TAAATTAACAAAGGCTACTATGATAAAGTGTTAAAAGGTGGTATGATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACAAAGGCTACTATGATAAAGTGTTAAAAGGTGGTATGATCTT  450

seq1  TGTTTCTTGTAACCCTAGTTTTTGTTTTGTAGTTATTAAATAGATCGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTGTAACCCTAGTTTTTGTTTTGTAGTTATTAAATAGATCGTCT  500

seq1  GTTGAGAGGCTCTTTTAAAACCACAGCCAAGAACAGACTTTGGCTTAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGGCTCTTTTAAAACCACAGCCAAGAACAGACTTTGGCTTAAGA  550

seq1  GACAAACAGTTGGATCTACCTCTAGCAGCTAGCAGAGGCCATGGCAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACAGTTGGATCTACCTCTAGCAGCTAGCAGAGGCCATGGCAGCTA  600

seq1  CAATCCCTTCTGGAATCTGTTTGCATGTAAAATGCAGAGGAGTCCTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCTTCTGGAATCTGTTTGCATGTAAAATGCAGAGGAGTCCTGGTG  650

seq1  ACCTACCTTCAAGGCAACTGCCCTCCTGAAGGATTTCTTGGAAAACAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTTCAAGGCAACTGCCCTCCTGAAGGATTTCTTGGAAAACAGTA  700

seq1  ATCACCACTGTGGAATGTGAACCACCAGAAACTGCAAAGAATAAAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCACTGTGGAATGTGAACCACCAGAAACTGCAAAGAATAAAGGAAA  750

seq1  AACATTGTGGAAGAGATGAAGCCTCAGGGGGGCTTCAGCATTCAGTGTTT  800
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACATTGTGGAAGAGATGAAGCCTCA-GGGGGCTTCAGCATTCAGTGTTT  799

seq1  TCATAAGGGGACAATTTATAACACATCGCATGGTTTTTTTGTTTTTTCTG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCATAAGGGGACAATTTATAACACATCGCATGG-TTTTTTGTTTTTTCTG  848

seq1  TTTGTTTTTCCTTTTGTTTTGTTTTTGTTTTTCCTTTTCCTATTTGAATA  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTGTTTTTCCTTTTGTTTTG-TTTTGTTTTTCCTTTTCCTATTTGAATA  897

seq1  CTGTTGTGCTGAAATAGTTTCTCCAAACTGGACAGAATTTGGATTTTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGTTGTGCTGAAATAGTTTCTCCAAACTGGACAGAATTTGGA-TTTTGA  946

seq1  TTTTGTGACCTATTCTTTTTTTCTGTGTTTTGTCACATTGAAAATTTTAC  1000
      ||||||||||||||| ||||||||||| |||||||||||||||| |||||
seq2  TTTTGTGACCTATTC-TTTTTTCTGTG-TTTGTCACATTGAAAA-TTTAC  993

seq1  TCACAGTTAATTTGTTTCTTCCTGCGTGCCTTCACTTTTTAAAATTACTT  1050
      |||||||||||||| ||||| |||| |||  ||||||||  ||| ||| |
seq2  TCACAGTTAATTTG-TTCTT-CTGC-TGC--TCACTTTT--AAAATAC-T  1035

seq1  TGAGATACCCCCAAAGGTAGAAGGCTTTGAGCTGGCATGAGCTGGAGACA  1100
      |||||||||||  || |||||  || ||||||||||||| ||| ||||| 
seq2  TGAGATACCCC--AAAGTAGA--GC-TTGAGCTGGCATG-GCT-GAGAC-  1077

seq1  TATTAATTACTAGAAGGAAGATGGTGCTGTGGAG  1134
      |||  |||||| ||    |||| |||||||||||
seq2  TAT--ATTACTTGA---GAGAT-GTGCTGTGGAG  1105

seq1: chr7_95535543_95536785
seq2: B6Ng01-163F03.g_67_1268 (reverse)

seq1  TTCTCTTATCTGGTATCAATGGAGGGGAGACTTGATGC--CCTAGCATAG  48
      ||||||||||  |||||||  ||||   ||| | ||||   ||||     
seq2  TTCTCTTATC--GTATCAA--GAGG---GACCT-ATGCTGACTAG----A  38

seq1  GAGGATGCTATCTCTATCTCT-CTGCAATGAGTACAAGACACAAATACAA  97
      ||||        ||||||| | ||   ||| || | |||| |||||   |
seq2  GAGG--------TCTATCTATCCTAGCATG-GT-CCAGACCCAAAT--GA  76

seq1  CAAGAAATGGGTGAATTATTTACAGGAAAATTCTTAA-TCTGGTGGCTGA  146
      ||   ||||||| |||||||||||||  ||||||||| ||||||| ||| 
seq2  CA--GAATGGGT-AATTATTTACAGG--AATTCTTAATTCTGGTGTCTG-  120

seq1  AGACATTGAGAGTAG-CATATGTATTTATCAATAAGCTGAAGGCCT-AGT  194
      |||| ||||| |||| ||| ||||||||||||||||||||  |||| |||
seq2  AGACTTTGAGGGTAGACATTTGTATTTATCAATAAGCTGA--GCCTAAGT  168

seq1  TAAAAAAAAAACTTAATAGATAGAGAGAGGAAATACAACTCTGACTGTTC  244
      |||||||||||||  ||| |||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAACT--ATA-ATAGAGAGAGGAAATACAACTCTGACTGTTC  215

seq1  ACCTCGGGGCAG-ATATTCTATGGATGTTGCTGTGCTTCTTTGTTTTTTT  293
      ||||| |||||| |||||||||||| ||||||||||| |||  ||||| |
seq2  ACCTC-GGGCAGAATATTCTATGGA-GTTGCTGTGCTCCTTGATTTTTCT  263

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGTTTGGTTTTTTTTTTTT  343
       || || ||||||||||| |         | |||| |   ||||||||||
seq2  ATTATTATTTTTTTTTTTCT---------GGTGTTGG---TTTTTTTTTT  301

seq1  CTGGTGTTCATACTGACACTGAAACTTATTGCATGTAACC-TTCATGTGT  392
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGGTGTTCATACTGACACTGAAACTTATTGCATGTAACCTTTCATGTGT  351

seq1  TTCTACAACTTAAACTTTTAATATGCCACTATAATCTTCACAGGCAACTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAACTTAAACTTTTAATATGCCACTATAATCTTCACAGGCAACTT  401

seq1  GGAAAAATATGTAATCTATTCTGTAGTTCCATAATAAGATTAATAAATAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATATGTAATCTATTCTGTAGTTCCATAATAAGATTAATAAATAT  451

seq1  TCATTGAGCTACAACCATAGAACTGGTTAAGGTTCTGAACTTATATTTAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGCTACAACCATAGAACTGGTTAAGGTTCTGAACTTATATTTAG  501

seq1  GAAAAGAGTTAGTGAGGAATATAACCGATATGAAAGTATCAAACATATAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGTTAGTGAGGAATATAACCGATATGAAAGTATCAAACATATAA  551

seq1  GATTTCAAGTGTTTAAATGATGCAGAGTGGCTGTCACAGAATAAAGTAGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAGTGTTTAAATGATGCAGAGTGGCTGTCACAGAATAAAGTAGC  601

seq1  ATTAGAAAGTTGAGGGGGAGGGGAAGTAGTGTGTGGGGATGTGAGAGGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAGTTGAGGGGGAGGGGAAGTAGTGTGTGGGGATGTGAGAGGCT  651

seq1  ATGAGGAGGCAAGGGAAGGGAAACTGTGGTCAGGATGTAATATATGAGAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGGCAAGGGAAGGGAAACTGTGGTCAGGATGTAATATATGAGAG  701

seq1  AAGAATAAAACATTTTAAAAGGAATATAGGGAAAGTGTAGACTTTTCCTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAACATTTTAAAAGGAATATAGGGAAAGTGTAGACTTTTCCTT  751

seq1  AATAAAGAAAAAGCCTTTTCTGCTAGAGAGAAAAAGAAAAAAGAAAATAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAAAAGCCTTTTCTGCTAGAGAGAAAAAGAAAAAAGAAAATAA  801

seq1  ATCAAAGAAATATGAAATAGTGTTTTTCTAAAACATTAATTTGTGTGTGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAAATATGAAATAGTGTTTTTCTAAAACATTAATTTGTGTGTGT  851

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGTGCATTATATACA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATGTGCATTATATACA  901

seq1  TATATGAGGCAGCAGAGGAGAATAGCTAGCACCTACTCCATCACTCTCTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGGCAGCAGAGGAGAATAGCTAGCACCTACTCCATCACTCTCTT  951

seq1  CCTTGTTCCTTTTAGACAGAGATTTTCTTGTCTCCATCCTCAATAGTGCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCCTTTTAGACAGAGATTTTCTTGTCTCCATCCTCAATAGTGCA  1001

seq1  ATAGCTATATGTGTTCTGGGGCTTCAAGTGGTACACAAGCATTCTTACCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATATGTGTTCTGGGGCTTCAAGTGGTACACAAGCATTCTTACCT  1051

seq1  ATCCAGTCATTTCACTAGCTCCAACAATGGTGCTTTAATTAAAGGAATAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCATTTCACTAGCTCCAACAATGGTGCTTTAATTAAAGGAATAA  1101

seq1  TGTTATTCAATGTTTCAACCATCCCAGTACTTTATTCTTCGTTGTATGAG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCAATGTTTCAACCATCCCAGTACTTTATTCTTCGTTGTATGAG  1151

seq1  TTCCAAATGGTGTTTTTAATTGGTTGGTGGCTCTTCATCTGACTTGAATT  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAATGGTGTTTTTAATTGGTTGGTGGCTCTTCATCTGACTTGAATT  1201

seq1  C  1243
      |
seq2  C  1202