BAC Information

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BAC

Clone NameB6Ng01-164C04
Chromosome7 (Build37)
Map Location 96,121,786 - 96,292,935
singlet/doubletdoublet
Overlap geneTmem135
Upstream geneGrm5, Ctsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream geneLOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164C04.bB6Ng01-164C04.g
ACCDH956545DH956546
length1,2241,085
definitionDH956545|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C04, 5' end.DH956546|Mus musculus domesticus DNA, BAC clone: B6Ng01-164C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,121,786 - 96,123,032)(96,291,842 - 96,292,935)
sequence
gaattcaatcccttgggatgcacaggggaaaaaattagaaatgacactac
acacctgtaatcccagtgctaagatgcagaaacgggggggattcttggaa
actcctgaccaaaaagtcttactgaattgacgaatcctttatgtagtaag
ggacaagaagacatttagcatcaactcctagtctccacattacacacaca
acacaatgtacatactggcacacacacatacacaaacaaattattcttgt
attttgacataagacactgtccttttcagcaggagttcaattgtctttca
cctttatgaaaattttcctgctatttataatccatttatacacacacaca
cacatacacttctgcacacactgacacatttatcaaacacgcctttgatc
ctgttccgtacctgcctgcctagtctcttactagttaaaccaaaatcttt
aatagatgttcatttttgtgtctgatgagcataactcatttactcttttt
agaacatatgtttaatgcatgggagtcacaggaagtatttgttggatcaa
tttatatacagtctgactttaagatacatagtcttctagtatgctgctca
tgtaaaggtccaccagctaggctgtctagtgcctcaaatggagtagatag
atataagccaacatctaatgactgattttaaggcaaaacagatgtaaaaa
tcccaacataaataataaattcttctcacttaaatcactacactgtatta
ctaaagcagtcattagaattgttactcttcattgtctttcctcaattatt
tgacgcacaatcaacagagccatttgcctagaaatttgagttaatttccc
cttccctaatgaattagatttttattgttatttctggctgatggttgcat
cattgctccattgataagaccttgattctattactgtcattcatggatct
tgtgctccttttcatttgccagtcaagtcagactttgagatcacagtctc
tgtcttatagaacagacaaaccacaaacatgaccatcgatttctttctga
gtgaaaatagagttatgttacattttctaggcctgggggagtgaaaaaaa
gtcaatgcctggccagaatattagtagaaagatcgaataatcttgctgaa
aaaattgaaaccgggtttgaagcagtggcaatcatttccttacttaagag
agcggttgcgactgaggcttatta
gaattcctagccctgtgttgcagggagagcacctgatgcagtccttgctt
gctggggaaagctactgtatatgcaggggtgcggtgccctctgagacact
gcagcactcccggggaaagctaccgtatatgcaggggtgcagtgccctct
gagacactgcagcactcctgggaagggggggataagtgaggatctctctg
ttatctttttttctgtctctgtgttaatgaccattgattgctgagtttgg
cgtaggaggagcttttacttgcttttccccacagtgaaggtgtcagcttg
aagctcagtaaagtcaaattatcagctcgctaacggccattcatgcttcc
tgataaagatggctattcactgattatcatctcaaaagcaacatgtctac
ttgaaagcatattgacaaagatagattcttgagagtgacttaaacataaa
agcaattttttatcactacagttttaaaaatgcagcaaacaacaaaaata
gagataagaactactatattgcttaagagtacagtgttgatatttactaa
aataactgtctaattgaacaatctcaggctgttatggaagttcagaactt
gcgaccatcttactggaagttccttttaaggctcaccaagggcaggtatg
tgaccaagttgattttaatgtttataacaaattaataacttctataagga
ttttataaatatttttgtcccctgagggaatgttctttcagtggtaaatt
agttatttatatgtaaatcaatatgttcaacatagtaagaaaaaaatcag
atctgagttaaaactaaatatttgactcctttgccttataatagtttaga
cattttaaatattctagattaatgtgctcacctgctaactgccagttttt
cagcaattagataatcagcatttaatcttatctctgatctttaaactctt
ctttttaatttaaatatcaggtcggaatataggtcagtgtcagatttgcc
tagtttgtgcaaggcagctctcttcatgacttccaggctgcaggtggtga
cagcagttaacccctttaatccttaatggattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_96121786_96123032
seq2: B6Ng01-164C04.b_47_1270

seq1  GAATTCAATCCCTTGGGATGCACAGGGGAAAAAATTAGAAATGACACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCCTTGGGATGCACAGGGGAAAAAATTAGAAATGACACTAC  50

seq1  ACACCTGTAATCCCAGTGCTAAGATGCAGAAACGGGGGGGATTCTTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTAATCCCAGTGCTAAGATGCAGAAACGGGGGGGATTCTTGGAA  100

seq1  ACTCCTGACCAAAAAGTCTTACTGAATTGACGAATCCTTTATGTAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGACCAAAAAGTCTTACTGAATTGACGAATCCTTTATGTAGTAAG  150

seq1  GGACAAGAAGACATTTAGCATCAACTCCTAGTCTCCACATTACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGAAGACATTTAGCATCAACTCCTAGTCTCCACATTACACACACA  200

seq1  ACACAATGTACATACTGGCACACACACATACACAAACAAATTATTCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGTACATACTGGCACACACACATACACAAACAAATTATTCTTGT  250

seq1  ATTTTGACATAAGACACTGTCCTTTTCAGCAGGAGTTCAATTGTCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACATAAGACACTGTCCTTTTCAGCAGGAGTTCAATTGTCTTTCA  300

seq1  CCTTTATGAAAATTTTCCTGCTATTTATAATCCATTTATACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGAAAATTTTCCTGCTATTTATAATCCATTTATACACACACACA  350

seq1  CACATACACTTCTGCACACACTGACACATTTATCAAACACGCCTTTGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACTTCTGCACACACTGACACATTTATCAAACACGCCTTTGATC  400

seq1  CTGTTCCGTACCTGCCTGCCTAGTCTCTTACTAGTTAAACCAAAATCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCGTACCTGCCTGCCTAGTCTCTTACTAGTTAAACCAAAATCTTT  450

seq1  AATAGATGTTCATTTTTGTGTCTGATGAGCATAACTCATTTACTCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGTTCATTTTTGTGTCTGATGAGCATAACTCATTTACTCTTTTT  500

seq1  AGAACATATGTTTAATGCATGGGAGTCACAGGAAGTATTTGTTGGATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATATGTTTAATGCATGGGAGTCACAGGAAGTATTTGTTGGATCAA  550

seq1  TTTATATACAGTCTGACTTTAAGATACATAGTCTTCTAGTATGCTGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATACAGTCTGACTTTAAGATACATAGTCTTCTAGTATGCTGCTCA  600

seq1  TGTAAAGGTCCACCAGCTAGGCTGTCTAGTGCCTCAAATGGAGTAGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGGTCCACCAGCTAGGCTGTCTAGTGCCTCAAATGGAGTAGATAG  650

seq1  ATATAAGCCAACATCTAATGACTGATTTTAAGGCAAAACAGATGTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGCCAACATCTAATGACTGATTTTAAGGCAAAACAGATGTAAAAA  700

seq1  TCCCAACATAAATAATAAATTCTTCTCACTTAAATCACTACACTGTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACATAAATAATAAATTCTTCTCACTTAAATCACTACACTGTATTA  750

seq1  CTAAAGCAGTCATTAGAATTGTTACTCTTCATTGTCTTTCCTCAATTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAGTCATTAGAATTGTTACTCTTCATTGTCTTTCCTCAATTATT  800

seq1  TGACGCACAATCAACAGAGCCATTTGCCTAGAAATTTGAGTTAATTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGCACAATCAACAGAGCCATTTGCCTAGAAATTTGAGTTAATTTCCC  850

seq1  CTTCCCTAATGAATTAGATTTTTATTGTTATTTCTGGCTGATGGTTGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTAATGAATTAGATTTTTATTGTTATTTCTGGCTGATGGTTGCAT  900

seq1  CATTGCTCCATTGATAAGACCTTGATTCTATTACTGTCATTCATGGATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCCATTGATAAGACCTTGATTCTATTACTGTCATTCATGGATCT  950

seq1  TGTGCTCCTTTTCATTTGCCAGTCAAGTCAGACTTTGAGATCACAGTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCCTTTTCATTTGCCAGTCAAGTCAGACTTTGAGATCACAGTCTC  1000

seq1  TGTCTTATAGAAACAGACAAAACCACAAACATGACCATCGATTTCTTTCT  1050
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  TGTCTTATAG-AACAGAC-AAACCACAAACATGACCATCGATTTCTTTCT  1048

seq1  TGAAGTGGAAAATAAGAGTTATGTTACAATTTTCTAGGCCCTTGTGGAGT  1100
         ||| |||||| ||||||||||||| |||||||||| ||| | |||||
seq2  --GAGT-GAAAAT-AGAGTTATGTTAC-ATTTTCTAGG-CCTGGGGGAGT  1092

seq1  GAGAAAAAAGTCAATGCCTGGCACAGATAATTTAGTAGAGAGAATCAGAT  1150
      || ||||||||||||||||||| |||| |  |||||||| || |||  ||
seq2  GA-AAAAAAGTCAATGCCTGGC-CAGA-ATATTAGTAGAAAG-ATCGAAT  1138

seq1  ATAAATCTTGCTGAAAAAAATTGAAACTGTTTTTGGAAAGCAGTGCAAAT  1200
         |||||||||| ||||||||||||| |  ||||  ||||||||  |||
seq2  ---AATCTTGCTG-AAAAAATTGAAACCGGGTTTG--AAGCAGTGGCAAT  1182

seq1  CA-TTGCTTACATAAGAAAGCTGTTGCGACCCTTTGAAAGGCTTATTA  1247
      || || ||||| ||||| ||| ||||||||    ||  ||||||||||
seq2  CATTTCCTTACTTAAGAGAGCGGTTGCGAC----TG--AGGCTTATTA  1224

seq1: chr7_96291842_96292935
seq2: B6Ng01-164C04.g_68_1152 (reverse)

seq1  AAGAATTCAATTAAGATTAAAGGGGTAAACTTGCCTGTCACCACCTGCAG  50
      |||||| || | | |||||||||||| ||||   ||||||||||||||||
seq2  AAGAATCCATTAAGGATTAAAGGGGTTAACT--GCTGTCACCACCTGCAG  48

seq1  CCCTGGAGTCATGGAGGAGAGCTGGCCCTTGCACAAACTAGGCAAATCTG  100
      ||  | |||||| || ||||||||  ||||||||||||||||||||||||
seq2  CCTGGAAGTCAT-GAAGAGAGCTG--CCTTGCACAAACTAGGCAAATCTG  95

seq1  ACACTGACCTATATTTCCAACTTGATATTTTAAATTAAAAAAGAAGAGTT  150
      ||||||||||||| |||| || ||||| |||||||| |||||||||||||
seq2  ACACTGACCTATA-TTCCGACCTGATA-TTTAAATT-AAAAAGAAGAGTT  142

seq1  TAAAGATTCAGAGATAAGATTAAATGCTGATTATCTAATTGCTGAAAAAC  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGA-TCAGAGATAAGATTAAATGCTGATTATCTAATTGCTGAAAAAC  191

seq1  TGGCAGTTAGCAGGTGAGCACATTAATCTAGAATATTTAAAATGTCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTTAGCAGGTGAGCACATTAATCTAGAATATTTAAAATGTCTAAA  241

seq1  CTATTATAAGGCAAAGGAGTCAAATATTTAGTTTTAACTCAGATCTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATAAGGCAAAGGAGTCAAATATTTAGTTTTAACTCAGATCTGATT  291

seq1  TTTTTCTTACTATGTTGAACATATTGATTTACATATAAATAACTAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTACTATGTTGAACATATTGATTTACATATAAATAACTAATTTA  341

seq1  CCACTGAAAGAACATTCCCTCAGGGGACAAAAATATTTATAAAATCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAAAGAACATTCCCTCAGGGGACAAAAATATTTATAAAATCCTTA  391

seq1  TAGAAGTTATTAATTTGTTATAAACATTAAAATCAACTTGGTCACATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTATTAATTTGTTATAAACATTAAAATCAACTTGGTCACATACC  441

seq1  TGCCCTTGGTGAGCCTTAAAAGGAACTTCCAGTAAGATGGTCGCAAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGGTGAGCCTTAAAAGGAACTTCCAGTAAGATGGTCGCAAGTTC  491

seq1  TGAACTTCCATAACAGCCTGAGATTGTTCAATTAGACAGTTATTTTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCCATAACAGCCTGAGATTGTTCAATTAGACAGTTATTTTAGTA  541

seq1  AATATCAACACTGTACTCTTAAGCAATATAGTAGTTCTTATCTCTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAACACTGTACTCTTAAGCAATATAGTAGTTCTTATCTCTATTTT  591

seq1  TGTTGTTTGCTGCATTTTTAAAACTGTAGTGATAAAAAATTGCTTTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTGCTGCATTTTTAAAACTGTAGTGATAAAAAATTGCTTTTATG  641

seq1  TTTAAGTCACTCTCAAGAATCTATCTTTGTCAATATGCTTTCAAGTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCACTCTCAAGAATCTATCTTTGTCAATATGCTTTCAAGTAGAC  691

seq1  ATGTTGCTTTTGAGATGATAATCAGTGAATAGCCATCTTTATCAGGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTTTTGAGATGATAATCAGTGAATAGCCATCTTTATCAGGAAGC  741

seq1  ATGAATGGCCGTTAGCGAGCTGATAATTTGACTTTACTGAGCTTCAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGCCGTTAGCGAGCTGATAATTTGACTTTACTGAGCTTCAAGCT  791

seq1  GACACCTTCACTGTGGGGAAAAGCAAGTAAAAGCTCCTCCTACGCCAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTCACTGTGGGGAAAAGCAAGTAAAAGCTCCTCCTACGCCAAAC  841

seq1  TCAGCAATCAATGGTCATTAACACAGAGACAGAAAAAAAGATAACAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATCAATGGTCATTAACACAGAGACAGAAAAAAAGATAACAGAGA  891

seq1  GATCCTCACTTATCCCCCCCTTCCCAGGAGTGCTGCAGTGTCTCAGAGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCACTTATCCCCCCCTTCCCAGGAGTGCTGCAGTGTCTCAGAGGG  941

seq1  CACTGCACCCCTGCATATACGGTAGCTTTCCCCGGGAGTGCTGCAGTGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCACCCCTGCATATACGGTAGCTTTCCCCGGGAGTGCTGCAGTGTC  991

seq1  TCAGAGGGCACCGCACCCCTGCATATACAGTAGCTTTCCCCAGCAAGCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGCACCGCACCCCTGCATATACAGTAGCTTTCCCCAGCAAGCAA  1041

seq1  GGACTGCATCAGGTGCTCTCCCTGCAACACAGGGCTAGGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCATCAGGTGCTCTCCCTGCAACACAGGGCTAGGAATTC  1085