BAC Information

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BAC

Clone NameB6Ng01-165G17
Chromosome7 (Build37)
Map Location 11,975,890 - 12,102,079
singlet/doubletdoublet
Overlap geneZscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782
Upstream geneLOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861
Downstream geneLOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165G17.bB6Ng01-165G17.g
ACCDH957481DH957482
length1,074857
definitionDH957481|Mus musculus domesticus DNA, BAC clone: B6Ng01-165G17, 5' end.DH957482|Mus musculus domesticus DNA, BAC clone: B6Ng01-165G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,975,890 - 11,976,968)(12,101,228 - 12,102,079)
sequence
gaattcactatgaagcccatgtcttgtcatgtacccaatggacaccctgg
gctgtgcaaagtagaaaggcctcaagcagtacatctttgtgggatagttt
tacataatgtgcattcaaatactgatttctgtgcaaggacacctaattgc
tattggctgttggcagtgtcataattgttgaagcatctcctgtctcaagg
ttgtgtaaaaattgttcttcatcacctctgtttggctaaatgtggagagc
ttttgaggttgcttctaggaaggtcaacctgatcaacccctagacacggt
gagaatgggactttgtttattgcctgtttgattacttttattattgtcta
gtttgttccttatttatgctttgttttttcttaactattttgtttatgcc
ttaggactggccatatactttgtgtgtacctagaatggtataaaagcaga
atggaaaaaaataaacagaccttcagcttcagaactggctagggtcatgt
tacagtgttgtccagttgtctttttcttttcaatccttgttcccttcctg
aagaacccattgactgtctgagctggctgggtcagttaataaagatctaa
atagacaatagctgggcaggagagataaaataggattttccatcccagtg
agggggttaaaggtggggggcagagatcaagaagggtgtcatgagtgagg
cttcatgaggagatgttggagcaggaggagccagggaaagactaagatgg
catgtaacaagacatgggactggaaaataatccaggccatgatagtcggg
tcagaatagatacatttctgtccagctgtaattcttgaagcttctgtatg
aatataatctctgtgtcattatgtgggaggacacagaagaaagaccacag
ttacacttttacatgacacagtcctcctgcctcagccactgtaagcacca
cctcactacaattggtgttttcctttttcttcttctttttctggaaaaag
gatcttaccctgtgtcatatctgaactccaagacccccttgtttctttcc
cctcagtgtttgtaaagctgtacc
gaattccaggacagccagggctccacagagaaatcctgtctcaacaaaac
aaaacaaaacaaaaacaatccctaaaacaaaacctaaaacccaaaaacca
tttaacctaacacttgagtagcagagggagggtaattcctctgcttacaa
ggccaaggaagactacataaagaaacaatgctgcagcagggcagtggtgg
catacgcctttaatcccagcacttaggaggcagaggcaggcagatttctg
agttctaggacagcctggtctacaaagtgagttccaagacagccagggct
atacagagaaaccctgtctccaaaaataaacaaacaagcaaaaaaacaaa
caaaccatgttgtaaatcacaaatacaagcaagcaagcaaccaggaaatg
aaccacaaaactaaaccaataaaaatctaaacaaaatatctgaaatagga
agcatttttaattggtatgtaggaatgcatgtatggggtggtagaatatt
ttcaacttttcacaatttctgtaaataactaagaattttgcaaatcacag
ctttgagaaaacatccaacataattaaatctttattaggtctatccaaat
ttgaatgtttggactgaagcaccattatgcatcacagaaattcttatggg
tatggtgctgttttgtatacagcaccaaccatattttcaatatcagaact
tttaccattctgacacctcagtttctagacagagattcatgatatagtaa
acagccaattttgagaatcccttctagtcaatttaatcccaaaattttgc
cacacacttccacggatcacaggctagcactgtgacccctgtgtataaag
tgttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11975890_11976968
seq2: B6Ng01-165G17.b_42_1116

seq1  GGAATTCACTATGAAGCCCATGTCTTGTCATGTACCCAATGGACACCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCACTATGAAGCCCATGTCTTGTCATGTACCCAATGGACACCCTG  50

seq1  GGCTGTGCAAAGTAGAAAGGCCTCAAGCAGTACATCTTTGTGGGATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCAAAGTAGAAAGGCCTCAAGCAGTACATCTTTGTGGGATAGTT  100

seq1  TTACATAATGTGCATTCAAATACTGATTTCTGTGCAAGGACACCTAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAATGTGCATTCAAATACTGATTTCTGTGCAAGGACACCTAATTG  150

seq1  CTATTGGCTGTTGGCAGTGTCATAATTGTTGAAGCATCTCCTGTCTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGCTGTTGGCAGTGTCATAATTGTTGAAGCATCTCCTGTCTCAAG  200

seq1  GTTGTGTAAAAATTGTTCTTCATCACCTCTGTTTGGCTAAATGTGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTAAAAATTGTTCTTCATCACCTCTGTTTGGCTAAATGTGGAGAG  250

seq1  CTTTTGAGGTTGCTTCTAGGAAGGTCAACCTGATCAACCCCTAGACACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAGGTTGCTTCTAGGAAGGTCAACCTGATCAACCCCTAGACACGG  300

seq1  TGAGAATGGGACTTTGTTTATTGCCTGTTTGATTACTTTTATTATTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGGGACTTTGTTTATTGCCTGTTTGATTACTTTTATTATTGTCT  350

seq1  AGTTTGTTCCTTATTTATGCTTTGTTTTTTCTTAACTATTTTGTTTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTCCTTATTTATGCTTTGTTTTTTCTTAACTATTTTGTTTATGC  400

seq1  CTTAGGACTGGCCATATACTTTGTGTGTACCTAGAATGGTATAAAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGACTGGCCATATACTTTGTGTGTACCTAGAATGGTATAAAAGCAG  450

seq1  AATGGAAAAAAATAAACAGACCTTCAGCTTCAGAACTGGCTAGGGTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAAAATAAACAGACCTTCAGCTTCAGAACTGGCTAGGGTCATG  500

seq1  TTACAGTGTTGTCCAGTTGTCTTTTTCTTTTCAATCCTTGTTCCCTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGTTGTCCAGTTGTCTTTTTCTTTTCAATCCTTGTTCCCTTCCT  550

seq1  GAAGAACCCATTGACTGTCTGAGCTGGCTGGGTCAGTTAATAAAGATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACCCATTGACTGTCTGAGCTGGCTGGGTCAGTTAATAAAGATCTA  600

seq1  AATAGACAATAGCTGGGCAGGAGAGATAAAATAGGATTTTCCATCCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACAATAGCTGGGCAGGAGAGATAAAATAGGATTTTCCATCCCAGT  650

seq1  GAGGGGGTTAAAGGTGGGGGGCAGAGATCAAGAAGGGTGTCATGAGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTTAAAGGTGGGGGGCAGAGATCAAGAAGGGTGTCATGAGTGAG  700

seq1  GCTTCATGAGGAGATGTTGGAGCAGGAGGAGCCAGGGAAAGACTAAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATGAGGAGATGTTGGAGCAGGAGGAGCCAGGGAAAGACTAAGATG  750

seq1  GCAGGTAACAAGACATGGGACTGGAAAATAATCCAGGCCATGATAGTCGG  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTAACAAGACATGGGACTGGAAAATAATCCAGGCCATGATAGTCGG  800

seq1  GTCAGAATAGATACATTTCTGTCCAGCTGTAATTCTTGAAGCTTCTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATAGATACATTTCTGTCCAGCTGTAATTCTTGAAGCTTCTGTAT  850

seq1  GAATATAATCTCTGTGTCATTATGTGGGAGGACACAGAAGAAAGACCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAATCTCTGTGTCATTATGTGGGAGGACACAGAAGAAAGACCACA  900

seq1  GTTACACTTTTACATGACACAGTCCTCCTGCCTCAGCCACTTGTAGGCA-  949
      |||||||||||||||||||||||||||||||||||||||| |||| ||| 
seq2  GTTACACTTTTACATGACACAGTCCTCCTGCCTCAGCCAC-TGTAAGCAC  949

seq1  CACCCCACTACACTTGGTGTTTT-CTTTTTCTTCTTCTTTTTCTCTGGAG  998
      |||| ||||||| |||||||||| |||||||||||||||||  |||||| 
seq2  CACCTCACTACAATTGGTGTTTTCCTTTTTCTTCTTCTTTT--TCTGGAA  997

seq1  AAAGGATCTTACCATGTAGCCATAGCTGAACTCAAAGACGCACCTGTTTC  1048
      ||||||||||||| ||| | |||| |||||||| ||||| | | ||||||
seq2  AAAGGATCTTACCCTGT-GTCATATCTGAACTCCAAGACCCCCTTGTTTC  1046

seq1  TGTCCCCTGAGTGTTAGTAAAGGCTTGTACC  1079
      | |||||| |||||| ||||||   ||||||
seq2  TTTCCCCTCAGTGTTTGTAAAG--CTGTACC  1075

seq1: chr7_12101228_12102079
seq2: B6Ng01-165G17.g_66_922 (reverse)

seq1  ATGAACAC-TTATACACAGGGTTCACAGTGCTAGCCTGTGATCCGTGGAA  49
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  ATGAACACTTTATACACAGGGGTCACAGTGCTAGCCTGTGATCCGTGGAA  50

seq1  GTGTGTGGCAAAAATTTGGGATTAAATTGACTAG-ATGGATTCTC-AAAT  97
      ||||||||||||| |||||||||||||||||||| | |||||||| ||||
seq2  GTGTGTGGCAAAATTTTGGGATTAAATTGACTAGAAGGGATTCTCAAAAT  100

seq1  TGGCTG-TTACT-TATCATTGAATCTCTGTCTAGAAAACTGAGGTGTCAG  145
      |||||| ||||| ||||| ||||||||||||||| |||||||||||||||
seq2  TGGCTGTTTACTATATCA-TGAATCTCTGTCTAG-AAACTGAGGTGTCAG  148

seq1  AATGGT-AAAGTTCTGATATTG-AAATATGGTTGGTGCTGTATACAAAAC  193
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  AATGGTAAAAGTTCTGATATTGAAAATATGGTTGGTGCTGTATACAAAAC  198

seq1  AGCACCATACCCATAAGAATTTCTGTGATGCATAATGGTGCTTCAGTCCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATACCCATAAGAATTTCTGTGATGCATAATGGTGCTTCAGTCCA  248

seq1  AACATTCAAATTTGGATAGACCTAATAAAGATTTAATTATGTTGGATGTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCAAATTTGGATAGACCTAATAAAGATTTAATTATGTTGGATGTT  298

seq1  TTCTCAAAGCTGTGATTTGCAAAATTCTTAGTTATTTACAGAAATTGTGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAGCTGTGATTTGCAAAATTCTTAGTTATTTACAGAAATTGTGA  348

seq1  AAAGTTGAAAATATTCTACCACCCCATACATGCATTCCTACATACCAATT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAAAATATTCTACCACCCCATACATGCATTCCTACATACCAATT  398

seq1  AAAAATGCTTCCTATTTCAGATATTTTGTTTAGATTTTTATTGGTTTAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTTCCTATTTCAGATATTTTGTTTAGATTTTTATTGGTTTAGT  448

seq1  TTTGTGGTTCATTTCCTGGTTGCTTGCTTGCTTGTATTTGTGATTTACAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTTCATTTCCTGGTTGCTTGCTTGCTTGTATTTGTGATTTACAA  498

seq1  CATGGTTTGTTTGTTTTTTTGCTTGTTTGTTTATTTTTGGAGACAGGGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTGTTTGTTTTTTTGCTTGTTTGTTTATTTTTGGAGACAGGGTT  548

seq1  TCTCTGTATAGCCCTGGCTGTCTTGGAACTCACTTTGTAGACCAGGCTGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGCCCTGGCTGTCTTGGAACTCACTTTGTAGACCAGGCTGT  598

seq1  CCTAGAACTCAGAAATCTGCCTGCCTCTGCCTCCTAAGTGCTGGGATTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACTCAGAAATCTGCCTGCCTCTGCCTCCTAAGTGCTGGGATTAA  648

seq1  AGGCGTATGCCACCACTGCCCTGCTGCAGCATTGTTTCTTTATGTAGTCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTATGCCACCACTGCCCTGCTGCAGCATTGTTTCTTTATGTAGTCT  698

seq1  TCCTTGGCCTTGTAAGCAGAGGAATTACCCTCCCTCTGCTACTCAAGTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCCTTGTAAGCAGAGGAATTACCCTCCCTCTGCTACTCAAGTGT  748

seq1  TAGGTTAAATGGTTTTTGGGTTTTAGGTTTTGTTTTAGGGATTGTTTTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAAATGGTTTTTGGGTTTTAGGTTTTGTTTTAGGGATTGTTTTTG  798

seq1  TTTTGTTTTGTTTTGTTGAGACAGGATTTCTCTGTGGAGCCCTGGCTGTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTGAGACAGGATTTCTCTGTGGAGCCCTGGCTGTC  848

seq1  CTGGAATTC  852
      |||||||||
seq2  CTGGAATTC  857