BAC Information

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BAC

Clone NameB6Ng01-165I03
Chromosome7 (Build37)
Map Location 4,861,084 - 4,997,508
singlet/doubletdoublet
Overlap geneLOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784
Upstream genePira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a
Downstream geneZfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165I03.bB6Ng01-165I03.g
ACCDH957548DH957549
length1,1551,035
definitionDH957548|Mus musculus domesticus DNA, BAC clone: B6Ng01-165I03, 5' end.DH957549|Mus musculus domesticus DNA, BAC clone: B6Ng01-165I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,861,084 - 4,862,223)(4,996,236 - 4,997,508)
sequence
gaattcttggcctaggcagaatcggaagagaggtggccacctgaatgcag
tcctttggaatgaagactgtaggctatgaccccgtcatctctcctgaagt
cgcggcctcctttggtgttcagcagctgccgctggaggagatctggcctc
tctgtgatttcataactatctatacccctctcctgccctccaccacaggc
ttgctgcatgacagcacctttgctcagtgcaagaaaggcgtgcgagtggt
gaactgtgctcgaggaggcattgtggatgaaggtggcctgcggtctggtc
aatgtgctggggctgcactggatatatttacagaagagccaccaccgggc
cttagtggaccacgagaacatcatcagctgtctccacctgggtgccagca
ccaagaaggcccagagctgctgtggggaggaaatcgcagtccagtttgtg
gacatggtgaaggggaaatctctaacaggcgtcgtgaacgcccaggccct
caccagtgccttctctccacacactaagccttggattggtctggcagatg
cacgcctgggctggctcccctaaagggaccatccaggtggttacacaagg
aacatctctgaagaatgctgggacctgcctgagccctgtagtcattgtcg
gccttctgagagaagcatctaagcaggcagacatgaacttgctgaacgct
aagctactggtgaaagaggctggcctcaatgtcaccatcttccacaaccc
tggggtcccaggggagcagggcagcggggaaatgcctcctgactgtggcc
ctgactgggtactccctaccagggcaccacaccaatgctgcaggtgctca
acggaactgttttcagactagaggtgccactatgcaggggccaacccctg
ctcacgttccagctcagccctcccaccctgtgatcggcctcccggcagag
gcgggtgtacagctggttgtcctaccaaacctccaggtgtcttgacggag
agccctggggctctcctcccttgctgcccagccttggaagccatggaagc
agcatgtattttgaggctttccatttcttgcttcttgcccatgtgggtct
cgaaaatctctagccccacagggttctttctgaagaacccgctctactgt
tgacc
gaattcctgaccatccaggactacatcgggagatatcctctaagtgggcc
tgggagatggctcaacaggaaacagtgcttaccatcaaacctgaagacct
gagtttgagccctgggaccaacacggtgcaaggagagagccgacttctga
ccatcacacacacacaccacctttgacacaagtgcacttacacaaatgca
cacaaagcaactgaaaaaaaccactatcaaatgcttacagtagactttaa
tgtttaatgtgtatggatgttttcctctcatttatgcctgtgttccactt
gcatgtctggcgctcaaaaagcctagaactcctggaactggagttaaaag
atggttgtgagccaccatgtgagtgctggcaatcagaaccaggtcctctg
gaaaagcagcagccaatgctcttaactgctaagccatccagtgcccaaga
cattcgttttatataaaaatgtgttcagtttgattttgtagtttgagaaa
gggtctcatagtccaggctagccttgaactcactgtgtagctgttatgga
gttcaagacttcccaggggaaaaaataaagaagataacagactcaatcta
gattataagtagttaaatttcttgtagctggtagcaggacagctatctct
gagccaggcgagtgactgccactcaaagcagatgaggaaaggaaggactt
ttaaagacaaaaaccacagggagaccttgactatctgcacaagtaagcca
caaagctgctttgctctgccaagactaggtagtcaaggcacatccaaata
gtccttgaatgtctgcaggtttacagaagccaaaaggcagtcaatgataa
caaagcagctggtcgtggtgtacatttctggactgactgagtcaggttac
tagaatttatcttccagggctagaaccagaggcaatggccagtgggtacc
aagggctagaaccagaggcaaatggccagtgggtaccaagggctagaaca
tgagacaaatggcagtgggtaccagatggatgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4861084_4862223
seq2: B6Ng01-165I03.b_44_1198

seq1  GAATTCTTGGCCTAGGCAGAATCGGAAGAGAGGTGGCCACCTGAATGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCCTAGGCAGAATCGGAAGAGAGGTGGCCACCTGAATGCAG  50

seq1  TCCTTTGGAATGAAGACTGTAGGCTATGACCCCGTCATCTCTCCTGAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGAATGAAGACTGTAGGCTATGACCCCGTCATCTCTCCTGAAGT  100

seq1  CGCGGCCTCCTTTGGTGTTCAGCAGCTGCCGCTGGAGGAGATCTGGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCCTCCTTTGGTGTTCAGCAGCTGCCGCTGGAGGAGATCTGGCCTC  150

seq1  TCTGTGATTTCATAACTATCTATACCCCTCTCCTGCCCTCCACCACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATTTCATAACTATCTATACCCCTCTCCTGCCCTCCACCACAGGC  200

seq1  TTGCTGCATGACAGCACCTTTGCTCAGTGCAAGAAAGGCGTGCGAGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCATGACAGCACCTTTGCTCAGTGCAAGAAAGGCGTGCGAGTGGT  250

seq1  GAACTGTGCTCGAGGAGGCATTGTGGATGAAGGTGGCCTGCGGTCTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGCTCGAGGAGGCATTGTGGATGAAGGTGGCCTGCGGTCTGGTC  300

seq1  AATGTGCTGGGGCTGCACTGGATATATTTACAGAAGAGCCACCACCGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTGGGGCTGCACTGGATATATTTACAGAAGAGCCACCACCGGGC  350

seq1  CTTAGTGGACCACGAGAACATCATCAGCTGTCTCCACCTGGGTGCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGGACCACGAGAACATCATCAGCTGTCTCCACCTGGGTGCCAGCA  400

seq1  CCAAGAAGGCCCAGAGCTGCTGTGGGGAGGAAATCGCAGTCCAGTTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGGCCCAGAGCTGCTGTGGGGAGGAAATCGCAGTCCAGTTTGTG  450

seq1  GACATGGTGAAGGGGAAATCTCTAACAGGCGTCGTGAACGCCCAGGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGTGAAGGGGAAATCTCTAACAGGCGTCGTGAACGCCCAGGCCCT  500

seq1  CACCAGTGCCTTCTCTCCACACACTAAGCCTTGGATTGGTCTGGCAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTGCCTTCTCTCCACACACTAAGCCTTGGATTGGTCTGGCAGATG  550

seq1  CACGCCTGGGCTGGCTCCCCTAAAGGGACCATCCAGGTGGTTACACAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTGGGCTGGCTCCCCTAAAGGGACCATCCAGGTGGTTACACAAGG  600

seq1  AACATCTCTGAAGAATGCTGGGACCTGCCTGAGCCCTGTAGTCATTGTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCTGAAGAATGCTGGGACCTGCCTGAGCCCTGTAGTCATTGTCG  650

seq1  GCCTTCTGAGAGAAGCATCTAAGCAGGCAGACATGAACTTGCTGAACGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTGAGAGAAGCATCTAAGCAGGCAGACATGAACTTGCTGAACGCT  700

seq1  AAGCTACTGGTGAAAGAGGCTGGCCTCAATGTCACCATCTTCCACAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACTGGTGAAAGAGGCTGGCCTCAATGTCACCATCTTCCACAACCC  750

seq1  TGGGGTCCCAGGGGAGCAGGGCAGCGGGG-AATGCCTCCTGACTGTGGCC  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGGGTCCCAGGGGAGCAGGGCAGCGGGGAAATGCCTCCTGACTGTGGCC  800

seq1  CTGACT-GGTACTCCCTACCAGGGCACCACACCAATGCTGCAGGTGCTCA  848
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGGTACTCCCTACCAGGGCACCACACCAATGCTGCAGGTGCTCA  850

seq1  ACGGAACTGTTTTCAGACTAGAGGTGCCACTATGCAGGGGCCAACCCCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAACTGTTTTCAGACTAGAGGTGCCACTATGCAGGGGCCAACCCCTG  900

seq1  CTCACGTTCCCAGCTCAGCCCTCCAACCCTGTGATCGGCCTCCCGGCAGA  948
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  CTCACGTT-CCAGCTCAGCCCTCCCACCCTGTGATCGGCCTCCCGGCAGA  949

seq1  GGCGGGTGTACAGCT-GCTGTCCTACCAAACCTCCAAGGTGTC-TGACGG  996
      ||||||||||||||| | ||||||||||||||||| ||||||| ||||||
seq2  GGCGGGTGTACAGCTGGTTGTCCTACCAAACCTCC-AGGTGTCTTGACGG  998

seq1  AGAGCCCT-GGGCTCTCCTCCC-TGCTGCCCAGCC-TGGAAG-CATGGAA  1042
      |||||||| ||||||||||||| |||||||||||| |||||| |||||||
seq2  AGAGCCCTGGGGCTCTCCTCCCTTGCTGCCCAGCCTTGGAAGCCATGGAA  1048

seq1  GCAGCATGTA-TTTGAGGCTTTCCAGTTC-TGCTTC-TGCCCA--TGGGG  1087
      |||||||||| |||||||||||||| ||| |||||| ||||||  |||| 
seq2  GCAGCATGTATTTTGAGGCTTTCCATTTCTTGCTTCTTGCCCATGTGGGT  1098

seq1  CTCAGAAGTCTC-AGCCCCACAGGCT--CTTCTGAAGAAACCCGCTC-AC  1133
      |||  || |||| ||||||||||| |   |||||||| ||||||||| ||
seq2  CTCGAAAATCTCTAGCCCCACAGGGTTCTTTCTGAAG-AACCCGCTCTAC  1147

seq1  TG-TGACC  1140
      || |||||
seq2  TGTTGACC  1155

seq1: chr7_4996236_4997508
seq2: B6Ng01-165I03.g_69_1101 (reverse)

seq1  GCATCCATCTTGGTACCCACTGGCCATTTGCCTCTGCTAGGCATCCATCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTACCCACTGGCCATTTGCCTCTGCTAGGCATCCATCTTGGTACCCAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGGCCATTTGTCTCTGGTTCTAGCCCTTGGTACCCACTGGCCATTTGCCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTGGTTCTAGCCCTTGGTACCCACTGGCCATTTGCCTCTGGTAGGCATCC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTTGGTACCCACTGGCCATTTGCCTCTGGTAGGCATCCATCTTGGTAC  250
                                        ||||||||| ||||||
seq2  ----------------------------------GCATCCATC-TGGTAC  15

seq1  CCACTGGCCATTTGTCTCTGGTTCTAGCCCTTGGTACCCACTGGCCATTT  300
      ||||| ||||||||||||  ||||||||||||||||||||||||||||||
seq2  CCACT-GCCATTTGTCTCATGTTCTAGCCCTTGGTACCCACTGGCCATTT  64

seq1  GCCTCTGGTTCTAGCCCTTGGTACCCACTGGCCATTTGCCTCTGGTTCTA  350
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCTCTGGTTCTAGCCCTTGGTACCCACTGGCCA-TTGCCTCTGGTTCTA  113

seq1  GCCCCTGGAAGATAAATTCCTAGTAACCCTGACTCAGTCAGTCCAGAAAT  400
      | |||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  G-CCCTGGAAGATAAATT-CTAGTAA-CCTGACTCAGTCAGTCCAGAAAT  160

seq1  GTACAACCACGACCAGCTGCTTTGTTATCATTGACTGCCTTTTGGCTTCT  450
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAC-ACCACGACCAGCTGCTTTGTTATCATTGACTGCCTTTTGGCTTCT  209

seq1  GTAAACCTGCAGACATTCAAGGACTATTTGGATGTGCCTTGACTACCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCTGCAGACATTCAAGGACTATTTGGATGTGCCTTGACTACCTAG  259

seq1  TCTTGGCAGAGCAAAGCAGC-TTGTGGCTTACTTGTGCAGATAGTCAAGG  549
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTGGCAGAGCAAAGCAGCTTTGTGGCTTACTTGTGCAGATAGTCAAGG  309

seq1  TCTCCCTGTGGTTTTTGTCTTTAAAAGTCCTTCCTTTCCTCATCTGCTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGTGGTTTTTGTCTTTAAAAGTCCTTCCTTTCCTCATCTGCTTT  359

seq1  GAGTGGCAGTCACTCGCCTGGCTCAGAGATAGCTGTCCTGCTACCAGCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCAGTCACTCGCCTGGCTCAGAGATAGCTGTCCTGCTACCAGCTA  409

seq1  CAAGAAATTTAACTACTTATAATCTAGATTGAGTCTGTTATCTTCTTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATTTAACTACTTATAATCTAGATTGAGTCTGTTATCTTCTTTAT  459

seq1  TTTTTCCCCTGGGAAGTCTTGAACTCCATAACAGCTACACAGTGAGTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCTGGGAAGTCTTGAACTCCATAACAGCTACACAGTGAGTTCA  509

seq1  AGGCTAGCCTGGACTATGAGACCCTTTCTCAAACTACAAAATCAAACTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTGGACTATGAGACCCTTTCTCAAACTACAAAATCAAACTGA  559

seq1  ACACATTTTTATATAAAACGAATGTCTTGGGCACTGGATGGCTTAGCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTTTATATAAAACGAATGTCTTGGGCACTGGATGGCTTAGCAGT  609

seq1  TAAGAGCATTGGCTGCTGCTTTTCCAGAGGACCTGGTTCTGATTGCCAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCATTGGCTGCTGCTTTTCCAGAGGACCTGGTTCTGATTGCCAGC  659

seq1  ACTCACATGGTGGCTCACAACCATCTTTTAACTCCAGTTCCAGGAGTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACATGGTGGCTCACAACCATCTTTTAACTCCAGTTCCAGGAGTTCT  709

seq1  AGGCTTTTTGAGCGCCAGACATGCAAGTGGAACACAGGCATAAATGAGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTTGAGCGCCAGACATGCAAGTGGAACACAGGCATAAATGAGAG  759

seq1  GAAAACATCCATACACATTAAACATTAAAGTCTACTGTAAGCATTTGATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATCCATACACATTAAACATTAAAGTCTACTGTAAGCATTTGATA  809

seq1  GTGGTTTTTTTCAGTTGCTTTGTGTGCATTTGTGTAAGTGCACTTGTGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTTTTCAGTTGCTTTGTGTGCATTTGTGTAAGTGCACTTGTGTC  859

seq1  AAAGGTGGTGTGTGTGTGTGATGGTCAGAAGTCGGCTCTCTCCTTGCACC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGTGTGTGTGTGTGATGGTCAGAAGTCGGCTCTCTCCTTGCACC  909

seq1  GTGTTGGTCCCAGGGCTCAAACTCAGGTCTTCAGGTTTGATGGTAAGCAC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGTCCCAGGGCTCAAACTCAGGTCTTCAGGTTTGATGGTAAGCAC  959

seq1  TGTTTCCTGTTGAGCCATCTCCCAGGCCCACTTAGAGGATATCTCCCGAT  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTGTTGAGCCATCTCCCAGGCCCACTTAGAGGATATCTCCCGAT  1009

seq1  GTAGTCCTGGATGGTCAGGAATTC  1273
      ||||||||||||||||||||||||
seq2  GTAGTCCTGGATGGTCAGGAATTC  1033