BAC Information

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BAC

Clone NameB6Ng01-165L21
Chromosome7 (Build37)
Map Location 148,539,000 - 148,696,485
singlet/doubletdoublet
Overlap geneEps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1
Upstream geneGA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80
Downstream geneAp2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165L21.bB6Ng01-165L21.g
ACCDH957719DH957720
length1,0631,041
definitionDH957719|Mus musculus domesticus DNA, BAC clone: B6Ng01-165L21, 5' end.DH957720|Mus musculus domesticus DNA, BAC clone: B6Ng01-165L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,539,000 - 148,540,041)(148,695,446 - 148,696,485)
sequence
gaattcaaggacctgggccatatagtgagacactgtctcaaaatcctact
ccagggctggaggaatggctcagcagttaagagtacttactatctgctcc
tccagaagtccagaattcaatttccagcaaccacatggtggctaacaatc
gtctataatgggatctgatggcctcttctgtcttgcgggcatacatgcaa
atacagcactcatgtacataaataaatcttttcttttaagctgtactaaa
aacttgcttattcttctgtagccttggtgctcctttccttcagttatttt
gttaggtgtttcctttttatcttggtttggttgttcgggggaggttgttt
tcaagacagggtttctctgtatagccctggctgtcctggcacttgctctg
tagaccaggctggcctctaatttgcagagattcgcctgcctctgactcct
gcgtgctgggattaaaagggttcactaccacggctcaactgcatgctgaa
ctctttataaatataaacaaaactagccgggggctggagagatggctttt
acagacatcccaagtttggttcccaacacccacatcaggcagttcatatc
tccctctacctctggctccaggggtgctaataccctcctctggtctcccc
tgacaccaggcacaaacatgttatacacatacatacatgcaagcaaaaac
aatcatacataaaataaaaataaaggaaataaaaagaaacaagcccaaat
caaggagagtgaaaccccaggaagctaaggtagaaggattactgtaagtc
tgaggacattctaagctacatagtgaaattataggccagcctggttacag
agtggaacctcccttcagaaaaggggcgagggtcttgggggtgcagctca
gtgtgtacagtatttacctaatatgcacaaagccttgggtttgatcctca
gtaccacagacccatacaatatggcagcataagcctgcaatcacattact
tggggagaaatcagaatacaaggtcatcttcagctgcttagcagtcctca
atttgaaaccagc
gaattcagctttctaagagcacaaggtaagataggcctcctatttggggg
tgtcctgtagggtcttcgcctccagtgcctgaacccggggctaatcgtcc
tgatttctggaagcacttatgctttcagctcagagcctttcctcagtctc
cacctacgccttctgttgttggcaccaaatttctgtttctcactgatacc
tctgtcaactgcagttggacctatgccttgggtaaagcaaattgctactc
ccagctcacccttcacactgtgtatgctgctgggtgacattgtttatcgg
gtcccctctcaggccatgtctttccaaagtgaagagctctcatcctttca
tcctgtttgtcttctcagacaaatgggatgtgtgtaaagcaggtggcaag
acaggacagatccagtactgtggttcttctttgtccctgctgccaaaatt
cacagaaactacctgttttcttccttatctcattcttactacttttgttt
tcttttgtttggagacagtcatactctgtagttcaggctggcctagaatt
tattgccctggaacttactctgtagcccagggtggcctctgtctcataat
aatcctcttatctcagtgagctagctccagcttccagatctttatgcctt
ctatttagtttctaagtattatctgacaagcagtgatgtggatgaaggat
tcccttcccctcaaggtccccaagttgttattttgggcaccctggcatta
agtggctttcactgaccaagtatagacttcaggcatgagcccctctgcca
gaacagggtctgatagctcaggcttgtcagcagtttttgtctccattgaa
tggaatgggatagcactccatggggacccccataccagaggcatgagaaa
ccccagaggacgctgtgcttctgctgagagccagtagagatccaccttgg
agctgagaaagacctttaaacctatgaagcttgggtgtctaactaaaggt
tttgtgttcccagggagggtttggaaggtggctcttgccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148539000_148540041
seq2: B6Ng01-165L21.b_47_1089

seq1  GAATTCAAGGACCTGGGCCATATAGTGAGACACTGTCTCAAAATCCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACCTGGGCCATATAGTGAGACACTGTCTCAAAATCCTACT  50

seq1  CCAGGGCTGGAGGAATGGCTCAGCAGTTAAGAGTACTTACTATCTGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTGGAGGAATGGCTCAGCAGTTAAGAGTACTTACTATCTGCTCC  100

seq1  TCCAGAAGTCCAGAATTCAATTTCCAGCAACCACATGGTGGCTAACAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGTCCAGAATTCAATTTCCAGCAACCACATGGTGGCTAACAATC  150

seq1  GTCTATAATGGGATCTGATGGCCTCTTCTGTCTTGCGGGCATACATGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATAATGGGATCTGATGGCCTCTTCTGTCTTGCGGGCATACATGCAA  200

seq1  ATACAGCACTCATGTACATAAATAAATCTTTTCTTTTAAGCTGTACTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCACTCATGTACATAAATAAATCTTTTCTTTTAAGCTGTACTAAA  250

seq1  AACTTGCTTATTCTTCTGTAGCCTTGGTGCTCCTTTCCTTCAGTTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCTTATTCTTCTGTAGCCTTGGTGCTCCTTTCCTTCAGTTATTTT  300

seq1  GTTAGGTGTTTCCTTTTTATCTTGGTTTGGTTGTTCGGGGGAGGTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTGTTTCCTTTTTATCTTGGTTTGGTTGTTCGGGGGAGGTTGTTT  350

seq1  TCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGCACTTGCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGCACTTGCTCTG  400

seq1  TAGACCAGGCTGGCCTCTAATTTGCAGAGATTCGCCTGCCTCTGACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCTAATTTGCAGAGATTCGCCTGCCTCTGACTCCT  450

seq1  GCGTGCTGGGATTAAAAGGGTTCACTACCACGGCTCAACTGCATGCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCTGGGATTAAAAGGGTTCACTACCACGGCTCAACTGCATGCTGAA  500

seq1  CTCTTTATAAATATAAACAAAACTAGCCGGGGGCTGGAGAGATGGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATAAATATAAACAAAACTAGCCGGGGGCTGGAGAGATGGCTTTT  550

seq1  ACAGACATCCCAAGTTTGGTTCCCAACACCCACATCAGGCAGTTCATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATCCCAAGTTTGGTTCCCAACACCCACATCAGGCAGTTCATATC  600

seq1  TCCCTCTACCTCTGGCTCCAGGGGTGCTAATACCCTCCTCTGGTCTCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTACCTCTGGCTCCAGGGGTGCTAATACCCTCCTCTGGTCTCCCC  650

seq1  TGACACCAGGCACAAACATGTTATACACATACATACATGCAAGCAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCAGGCACAAACATGTTATACACATACATACATGCAAGCAAAAAC  700

seq1  AATCATACATAAAATAAAAATAAAGGAAATAAAAAGAAAACAAGCCCAAA  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATCATACATAAAATAAAAATAAAGGAAATAAAAAG-AAACAAGCCCAAA  749

seq1  TCAAGGAGAGTGAAACCCCAGGAAGCTAAGGTAGAAGGATTACTGTAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAGAGTGAAACCCCAGGAAGCTAAGGTAGAAGGATTACTGTAAGT  799

seq1  CTGAGGACATTCTAAGCTACATAGTG-AATTATAGGCCAGCCTGGCTACA  849
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  CTGAGGACATTCTAAGCTACATAGTGAAATTATAGGCCAGCCTGGTTACA  849

seq1  GAGTGGAACCTCCCTTCAGAAAAGGGGCGAGGGTCTT-GGGGTGCAGCTC  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGTGGAACCTCCCTTCAGAAAAGGGGCGAGGGTCTTGGGGGTGCAGCTC  899

seq1  AGTGTGTACAGTATTTACCTAATATGCACAAAGCCTTGGGTTTGATCCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTACAGTATTTACCTAATATGCACAAAGCCTTGGGTTTGATCCTC  949

seq1  AGTACCACAGACCCATACAAATATGGCAGCATAAGCCTGCAATCACATCA  998
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  AGTACCACAGACCCATAC-AATATGGCAGCATAAGCCTGCAATCACATTA  998

seq1  CTT-GGGAG-AATCAGGAATACAAGGTCATCTTCAGCTGCATAGCA  1042
      ||| ||||| ||||| |||||||||||||||||||||||| |||||
seq2  CTTGGGGAGAAATCA-GAATACAAGGTCATCTTCAGCTGCTTAGCA  1043

seq1: chr7_148695446_148696485
seq2: B6Ng01-165L21.g_68_1108 (reverse)

seq1  ATGGC-AGAGCCACC-TCCAAACCTCCCCTGGGAACAACAAAACCTTAGG  48
      ||||| ||||||||| ||||||||  |||||||||| ||||||||||  |
seq2  ATGGCAAGAGCCACCTTCCAAACCCTCCCTGGGAAC-ACAAAACCTTTAG  49

seq1  TCAGACAACCAAGGCTTCATAGGTTTAAAGGTCTTTCTCAGCT-CAAGGT  97
      | ||||| |||| |||||||||||||||||||||||||||||| ||||||
seq2  TTAGACACCCAA-GCTTCATAGGTTTAAAGGTCTTTCTCAGCTCCAAGGT  98

seq1  GGATCTCTACTGGCTTCTCAGCAGAGGCACAGCGTCCTCTGGGGGTTTCT  147
      |||||||||||||| |||||||||| |||||||||||||| |||||||||
seq2  GGATCTCTACTGGC-TCTCAGCAGAAGCACAGCGTCCTCT-GGGGTTTCT  146

seq1  CATGCCTCTGGTATGGGGGTCCCCATGGAGTGCTATCCCATTCCATTCAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCTGGTATGGGGGTCCCCATGGAGTGCTATCCCATTCCATTCAA  196

seq1  TGGAGACAAAAACTGCTGACAAGCCTGAGCTATCAGA-CCTGTTCTGGCA  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGAGACAAAAACTGCTGACAAGCCTGAGCTATCAGACCCTGTTCTGGCA  246

seq1  GAGGGGCTCATGCCTGAAGTCTATACTTGGTCAGTGAAAGCCACTTAATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCTCATGCCTGAAGTCTATACTTGGTCAGTGAAAGCCACTTAATG  296

seq1  CCAGGGTGCCCAAAATAACAACTTGGGGACCTTGAGGGGAAGGGAATCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGCCCAAAATAACAACTTGGGGACCTTGAGGGGAAGGGAATCCT  346

seq1  TCATCCACATCACTGCTTGTCAGATAATACTTAGAAACTAAATAGAAGGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCACATCACTGCTTGTCAGATAATACTTAGAAACTAAATAGAAGGC  396

seq1  AT-AAGATCTGGAAGCTGGAGCTAGCTCACTGAGATAAGAGGATTATTAT  445
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATCTGGAAGCTGGAGCTAGCTCACTGAGATAAGAGGATTATTAT  446

seq1  GAGACAGAGGCCACCCTGGGCTACAGAGTAAGTTCCAGGGCAATAAATTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGGCCACCCTGGGCTACAGAGTAAGTTCCAGGGCAATAAATTC  496

seq1  TAGGCCAGCCTGAACTACAGAGTATGACTGTCTCCAAACAAAAGAAAACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAGCCTGAACTACAGAGTATGACTGTCTCCAAACAAAAGAAAACA  546

seq1  AAAGTAGTAAGAATGAGATAAGGAAGAAAACAGGTAGTTTCTGTGAATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTAAGAATGAGATAAGGAAGAAAACAGGTAGTTTCTGTGAATTT  596

seq1  TGGCAGCAGGGACAAAGAAGAACCACAGTACTGGATCTGTCCTGTCTTGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCAGGGACAAAGAAGAACCACAGTACTGGATCTGTCCTGTCTTGC  646

seq1  CACCTGCTTTACACACATCCCATTTGTCTGAGAAGACAAACAGGATGAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTTTACACACATCCCATTTGTCTGAGAAGACAAACAGGATGAAA  696

seq1  GGATGAGAGCTCTTCACTTTGGAAAGACATGGCCTGAGAGGGGACCCGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGAGCTCTTCACTTTGGAAAGACATGGCCTGAGAGGGGACCCGAT  746

seq1  AAACAATGTCACCCAGCAGCATACACAGTGTGAAGGGTGAGCTGGGAGTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGTCACCCAGCAGCATACACAGTGTGAAGGGTGAGCTGGGAGTA  796

seq1  GCAATTTGCTTTACCCAAGGCATAGGTCCAACTGCAGTTGACAGAGGTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTGCTTTACCCAAGGCATAGGTCCAACTGCAGTTGACAGAGGTAT  846

seq1  CAGTGAGAAACAGAAATTTGGTGCCAACAACAGAAGGCGTAGGTGGAGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAAACAGAAATTTGGTGCCAACAACAGAAGGCGTAGGTGGAGAC  896

seq1  TGAGGAAAGGCTCTGAGCTGAAAGCATAAGTGCTTCCAGAAATCAGGACG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAGGCTCTGAGCTGAAAGCATAAGTGCTTCCAGAAATCAGGACG  946

seq1  ATTAGCCCCGGGTTCAGGCACTGGAGGCGAAGACCCTACAGGACACCCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCCGGGTTCAGGCACTGGAGGCGAAGACCCTACAGGACACCCCC  996

seq1  AAATAGGAGGCCTATCTTACCTTGTGCTCTTAGAAAGCTGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGAGGCCTATCTTACCTTGTGCTCTTAGAAAGCTGAATTC  1041