BAC Information

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BAC

Clone NameB6Ng01-165P18
Chromosome7 (Build37)
Map Location 78,380,489 - 78,550,286
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165P18.bB6Ng01-165P18.g
ACCDH957891DH957892
length1,1231,092
definitionDH957891|Mus musculus domesticus DNA, BAC clone: B6Ng01-165P18, 5' end.DH957892|Mus musculus domesticus DNA, BAC clone: B6Ng01-165P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,549,151 - 78,550,286)(78,380,489 - 78,381,572)
sequence
gaattcaaagcactaacctgaagttgaaatgagagggaaatgcttcttgc
tggcttcttctttggcttgatcattctcatactttgatagcacttttata
cattataggaccaacctacctaagaaatagcgctacccatggtgggcagg
gccctccaacatcaattaagacaatgaagactatcttttattgacatgtc
aacagagcaactctcttcaaggtgacagctagtgtggatgataaagctat
ttactaccttcagtgtcttcttaaccagataaagcactagtatgagaatt
gtggacatttgtcactcaaattaacatttatttttatacatcgtgttaga
tcagtttcaagcttcaaatcatatttgaaaataaaataaatattccgtca
ttgtttagagaaagcaacaaaatacagtaaacaaggcaacttgtggttca
atgatataataatggcagtaataccaaacacaactctatcacagttacat
tttcttttcaactgtaagaaagagctggttaaagaagctaccagttctgc
tttggcttctgtcttgccagtgcgtgtcaagggcccaggggataactcat
ggtgagacaaatctatcatttctcctgagtgctttctatagtggtatgag
tagcctataagattgatgcttcctcaaaatgccatcttaaagtgcgggaa
tttgtttttgatacaccaatgaactttcctccttattccagttgaatctg
tcgccatgggtgtattgatgtcattttccctggctcccatgctttttctt
tccttttgaagtaatgcctgttgaaatttgtagttaaaaaaacatgaatt
catcttgctccttctgtggatccgattctgttgaaacccagttttacttg
aacactgatgtcctgggcatcagatttgagcagctatccctggattgcaa
gcagatcagttgtattctaggctagtactgagggcctaaggatcattctc
cattctttgaaactaactcaggacattcttcaattgtcaaggtcattgtc
accagctagtcatgcatgttttttttgtttgttgggtttttgatttttgt
ttttttttagaaaactcctttct
gaattccaggtcaaccatggctatatcctgagaaaaaaaaaattaagtaa
ataaaataaagggcaaagaaagtaaataatccttcagcataataatgacc
ttgagtggaaggatcccggaggttaccgtcacctcactcatgaccttgat
tcactacattcctataacaaacacacacattttcatcggaaaccttacaa
tattgtttatacctattgtggtcacacagtattttacacagatcccagat
aaccagggtttgtgtatggtttgtaaaggactgccaaacaaatgatctat
atgtttctatagaaatgtcacagaatctggggttccaatagggaaatcag
cactcactgtgcagcctggctgtcaagacagaaaagagcacaggctacag
ctaggtttctgaaatactgacagcccccgatgtaagaatttcatgtcaaa
tatgtgggtccagcccacactattgaatgtgctttttaatcctgcggtgg
ggggttcttcctccttgcaactttcttttctgtttatgtcaactgtatta
ggcatttttccactcctttacagagcagctcactttaattagaaaggatc
tccgtaatccacagatataggctaataaatattctccagacttcctatta
ctgaagcacacagtgcagttagcctgggctctagcttgcctccatgaaaa
tacctgaacagcagttaaagtcaccccacttcccacacggggtgcataag
ctcccatcattattttttgctagactttctaaggggtgtggatctggctt
ccatgggctttgaatgatcttcttgatttgtaaatcaagcctaagttaga
aaggatggactgccacctcctctgggctctgcttcatgtcacaggggtac
agttcatcagacaaacacctcataagcatcagttctggcaggcttccagg
gaaaaccatgtcatgccattgaataacatttaggacccatctctccactt
cccccttcccctaataactaataagttggggaaaggtctttggctgtctc
caagaataacaaggaggttaaagggaccttactaaatgtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78549151_78550286
seq2: B6Ng01-165P18.b_46_1168 (reverse)

seq1  AGAAAG--ATTTTCTTAAAAAAAAAAAAAACAAAAAACAAAAAACAAACA  48
      ||||||   ||||||      ||||||||||||||| |||||| | ||||
seq2  AGAAAGGAGTTTTCT------AAAAAAAAACAAAAATCAAAAACCCAACA  44

seq1  AACAAAAAAAAAACATGCATTGACTAAGCTGCTGACAATGACC-TGACAA  97
      |||  |||||||||||||| ||||| ||||| ||||||||||| ||||||
seq2  AAC--AAAAAAAACATGCA-TGACT-AGCTGGTGACAATGACCTTGACAA  90

seq1  TTGAAGAATGTCTTGAGTTTAGTTTTCAAAGAATGGAGAATGATTCCCTA  147
      |||||||||||| |||| |||| |||||||||||||||||||| ||| ||
seq2  TTGAAGAATGTCCTGAG-TTAG-TTTCAAAGAATGGAGAATGA-TCCTTA  137

seq1  GGCCCTCAGTACTAGCCTAGAATACAACTGATCCTGCTTGCAATCCAGGG  197
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGCCCTCAGTACTAGCCTAGAATACAACTGAT-CTGCTTGCAATCCAGGG  186

seq1  ATAGCTGCTCAAATTCTGATGCCCAGGACATCAGTGTTCAAGTAAAACTT  247
      ||||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  ATAGCTGCTCAAA-TCTGATGCCCAGGACATCAGTGTTCAAGTAAAACTG  235

seq1  GGTTTCAACAGAATCGGATCCACAGAAGGAGCAAGATGAATTTCATGTTT  297
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGTTTCAACAGAATCGGATCCACAGAAGGAGCAAGATGAA-TTCATGTTT  284

seq1  TTTTAACTACAAATTTCAACAGGCATTACTTCAAAAGGAAAGAAAAAGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTACAAATTTCAACAGGCATTACTTCAAAAGGAAAGAAAAAGCA  334

seq1  TGGGAGCCAGGGAAAATGACATCAATACACCCATGGCGACAGATTCAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCAGGGAAAATGACATCAATACACCCATGGCGACAGATTCAACT  384

seq1  GGAATAAGGAGGAAAGTTCATTGGTGTATCAAAAACAAATTCCCGCACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGGAGGAAAGTTCATTGGTGTATCAAAAACAAATTCCCGCACTT  434

seq1  TAAGATGGCATTTTGAGGAAGCATCAATCTTATAGGCTACTCATACCACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGCATTTTGAGGAAGCATCAATCTTATAGGCTACTCATACCACT  484

seq1  ATAGAAAGCACTCAGGAGAAATGATAGATTTGTCTCACCATGAGTTATCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGCACTCAGGAGAAATGATAGATTTGTCTCACCATGAGTTATCC  534

seq1  CCTGGGCCCTTGACACGCACTGGCAAGACAGAAGCCAAAGCAGAACTGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCCCTTGACACGCACTGGCAAGACAGAAGCCAAAGCAGAACTGGT  584

seq1  AGCTTCTTTAACCAGCTCTTTCTTACAGTTGAAAAGAAAATGTAACTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTTAACCAGCTCTTTCTTACAGTTGAAAAGAAAATGTAACTGTG  634

seq1  ATAGAGTTGTGTTTGGTATTACTGCCATTATTATATCATTGAACCACAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTGTGTTTGGTATTACTGCCATTATTATATCATTGAACCACAAG  684

seq1  TTGCCTTGTTTACTGTATTTTGTTGCTTTCTCTAAACAATGACGGAATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGTTTACTGTATTTTGTTGCTTTCTCTAAACAATGACGGAATAT  734

seq1  TTATTTTATTTTCAAATATGATTTGAAGCTTGAAACTGATCTAACACGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTTCAAATATGATTTGAAGCTTGAAACTGATCTAACACGAT  784

seq1  GTATAAAAATAAATGTTAATTTGAGTGACAAATGTCCACAATTCTCATAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAATAAATGTTAATTTGAGTGACAAATGTCCACAATTCTCATAC  834

seq1  TAGTGCTTTATCTGGTTAAGAAGACACTGAAGGTAGTAAATAGCTTTATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTTATCTGGTTAAGAAGACACTGAAGGTAGTAAATAGCTTTATC  884

seq1  ATCCACACTAGCTGTCACCTTGAAGAGAGTTGCTCTGTTGACATGTCAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACTAGCTGTCACCTTGAAGAGAGTTGCTCTGTTGACATGTCAAT  934

seq1  AAAAGATAGTCTTCATTGTCTTAATTGATGTTGGAGGGCCCTGCCCACCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAGTCTTCATTGTCTTAATTGATGTTGGAGGGCCCTGCCCACCA  984

seq1  TGGGTAGCGCTATTTCTTAGGTAGGTTGGTCCTATAATGTATAAAAGTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGCGCTATTTCTTAGGTAGGTTGGTCCTATAATGTATAAAAGTGC  1034

seq1  TATCAAAGTATGAGAATGATCAAGCCAAAGAAGAAGCCAGCAAGAAGCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGTATGAGAATGATCAAGCCAAAGAAGAAGCCAGCAAGAAGCAT  1084

seq1  TTCCCTCTCATTTCAACTTCAGGTTAGTGCTTTGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTCATTTCAACTTCAGGTTAGTGCTTTGAATTC  1123

seq1: chr7_78380489_78381572
seq2: B6Ng01-165P18.g_67_1158

seq1  GAATTCCAGGCCAACCATGGCTATATCCTGAGAAAAAAAAAATTAAGTAA  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAACCATGGCTATATCCTGAGAAAAAAAAAATTAAGTAA  50

seq1  ATAAAATAAAGGGCAAAGAAAGTAAATAATCCTTCAGCATAATAATGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAGGGCAAAGAAAGTAAATAATCCTTCAGCATAATAATGACC  100

seq1  TTGAGTGGAAGGATCCCGGAGGTTACCGTCACCTCACTCATGACCTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGGAAGGATCCCGGAGGTTACCGTCACCTCACTCATGACCTTGAT  150

seq1  TCACTACATTCCTATAACAAACACACACATTTTCATCGGAAACCTTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACATTCCTATAACAAACACACACATTTTCATCGGAAACCTTACAA  200

seq1  TATTGTTTATACCTATTGTGGTCACACAGTATTTTACACAGATCCCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTATACCTATTGTGGTCACACAGTATTTTACACAGATCCCAGAT  250

seq1  AACCAGGGTTTGTGTATGGTTTGTAAAGGACTGCCAAACAAATGATCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGTTTGTGTATGGTTTGTAAAGGACTGCCAAACAAATGATCTAT  300

seq1  ATGTTTCTATAGAAATGTCACAGAATCTGGGGTTCCAATAGGGAAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTATAGAAATGTCACAGAATCTGGGGTTCCAATAGGGAAATCAG  350

seq1  CACTCACTGTGCAGCCTGGCTGTCAAGACAGAAAAGAGCACAGGCTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTGTGCAGCCTGGCTGTCAAGACAGAAAAGAGCACAGGCTACAG  400

seq1  CTAGGTTTCTGAAATACTGACAGCCCCCGATGTAAGAATTTCATGTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTTCTGAAATACTGACAGCCCCCGATGTAAGAATTTCATGTCAAA  450

seq1  TATGTGGGTCCAGCCCACACTATTGAATGTGCTTTTTAATCCTGCGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGTCCAGCCCACACTATTGAATGTGCTTTTTAATCCTGCGGTGG  500

seq1  GGGGTTCTTCCTCCTTGCAACTTTCTTTTCTGTTTATGTCAACTGTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCTTCCTCCTTGCAACTTTCTTTTCTGTTTATGTCAACTGTATTA  550

seq1  GGCATTTTTCCACTCCTTTACAGAGCAGCTCACTTTAATTAGAAAGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTTCCACTCCTTTACAGAGCAGCTCACTTTAATTAGAAAGGATC  600

seq1  TCCGTAATCCACAGATATAGGCTAATAAATATTCTCCAGACTTCCTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTAATCCACAGATATAGGCTAATAAATATTCTCCAGACTTCCTATTA  650

seq1  CTGAAGCACACAGTGCAGTTAGCCTGGGCTCTAGCTTGCCTCCATGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCACACAGTGCAGTTAGCCTGGGCTCTAGCTTGCCTCCATGAAAA  700

seq1  TACCTGAACAGCAGTTAAAGTCACCCCACTTCCCACACGGGGTGCATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAACAGCAGTTAAAGTCACCCCACTTCCCACACGGGGTGCATAAG  750

seq1  CTCCCATCATTATTTTTTGCTAGACTTTCTAAGGGGTGTGGATCTGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCATTATTTTTTGCTAGACTTTCTAAGGGGTGTGGATCTGGCTT  800

seq1  CCATGGGCTTTGAATGATCTTCTTGATTTGTAAATCAAGCCTAAGTTAG-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCATGGGCTTTGAATGATCTTCTTGATTTGTAAATCAAGCCTAAGTTAGA  850

seq1  AAGGATGGACTGCCACCTCCTCTGGGCTCTGCTTCATGTCACAGGGGTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGACTGCCACCTCCTCTGGGCTCTGCTTCATGTCACAGGGGTAC  900

seq1  AGTTCATCAGACAAACACCTCATAAGCATCAGTTCTGGCAGGCTTCCAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCAGACAAACACCTCATAAGCATCAGTTCTGGCAGGCTTCCAGG  950

seq1  GAAAACCATGTCATGCCATTGAATAACATTTAGGACCCAATCTCT-CACT  998
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  GAAAACCATGTCATGCCATTGAATAACATTTAGGACCC-ATCTCTCCACT  999

seq1  --CCCCCTCCTCT-ATAACTAAATAAGTTGGGGAAAGGTCTTGGCCTGTC  1045
        |||| ||| || |||||| ||||||||||||||||||||| | |||||
seq2  TCCCCCTTCCCCTAATAACT-AATAAGTTGGGGAAAGGTCTTTGGCTGTC  1048

seq1  T-CAAG-ATAACAAGAAGTTTAAAGG--ACTTACT-AATGTTTC  1084
      | |||| |||||||| || |||||||   |||||| ||||||||
seq2  TCCAAGAATAACAAGGAGGTTAAAGGGACCTTACTAAATGTTTC  1092