BAC Information

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BAC

Clone NameB6Ng01-166I09
Chromosome3 (Build37)7 (Build37)
Map Location 41,059,191 - 41,059,73790,338,103 - 90,339,298
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166I09.bB6Ng01-166I09.g
ACCDH958282DH958283
length9501,169
definitionDH958282|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I09, 5' end.DH958283|Mus musculus domesticus DNA, BAC clone: B6Ng01-166I09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,191 - 41,059,737)(90,338,103 - 90,339,298)
sequence
gaattctttgttaagctctgcaccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtctcc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggcctt
tttgtctgattgatggtgtcttttgccttacagaagctttgcaattttat
taggtcccatttgttgattcttgatcttacagcacaagccattgctgttc
tattcaggaattttccccctgtgcccatatcttcgagactttccccactt
tctcctctataagtttcagtgtctctggttttatgtggagttccttgatc
cacttagatttgaccttagtacaaggagataggaatggatcagttcacat
tcttctacatgttaactgccagttgtgtcagcaccatttgttgaaaatgc
tgtcttttttccactggatggttttagctcccttgtcaaagatcaagtga
acataggtgtgtgggttcatttctgggtcttcatttctattccattggtc
tacttgtctgttgctataccaataccatacagtttttatcacaattgctc
tgtagtaaagctttagatcaggcatggtgattctaccagaggttctttta
tccttgagaagagtttttgctgtcctaggttttttgttactccagatgaa
tgtgcaaattgccctttctaattcgttgaagaattgagttggaattttga
tgggaattgcattgaatctgtagattgcttttggcaagatagccaatttt
acaatattgatcctgccaatccatgagcatgagagatctttccatcttct
gagatcttctttaatttctttcttcagagacttgaagtttttatcataca
gatctttcacttccttagttacaaggtattttatattattgtgactattg

gaattctctgaacagtgtctatctgcaatgtgccattgatgacttctgtt
tgtgacaactgaggtataagcgcctgtcacaaaacagtgtttcctactgt
tttctgttcctgctgtgtctcttaattttaggttctgggaatcgacagcc
ttcattggattgatggatacaccataggctgaactgagagatcttggata
ataaaaggttggggaatttaaggttttgtgtcccaggagagatcccagaa
agttgctaccacatggaaggtgaggtcagagaaagcagcagaacaactta
gcagggcacacgtgatgcctggccagtatggtactttcagacagaacggg
ctgactcaatgcaggattcggagtggcttctaggaggacgtgggcttgaa
aactgcttcctgtgtcccttctataaacacagagtgaaacatacttgtct
tttgtagtaatagaaaaatataaaaatgaaactaatgattaagaatgtgg
tatcttaaaagcaaaataaatagcgtgttgagagcaaaagtaccttgctt
gtatttgggtcaccctgggtagcctgtctatattaaactcataatccaca
tactccattgaactctaaacttatttatgaaaacccatcagaaggagata
attaaggagataaaggtttctgcaacttgttggatgttggttaaagaata
aattttgactaagaaaaaaataagacaaaatattagttttaaatgatttt
agttttacttatgtgcatatatgtgagtcagagacggagtatgtgcacat
gcaggcagttgcctgtggatgccagaggaaggtgtcagatcatgagtagc
ttcaattacaggttgttgtgaaccactggatatgtggacagggaagaaaa
ttcagattttctgcaagtgcagcctttctcctaaccactgagatattctg
tagctgagaaaccaaatctatgaaagtagttaagtacacgtttataacca
ctttatagagcatagtagtcataaatagacttttaggcaaattgaagcac
taggatatgatagtaactgaaagtgagtaccaggctattattttatacat
taaaagatgccagcctctttaacggaacagattgatgacatgaaaagtat
tcaagtatcaagggatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059191_41059737
seq2: B6Ng01-166I09.b_45_590 (reverse)

seq1  CAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCA  50
      ||||||||||||| ||||||| |||||| ||| ||||||||||||| |||
seq2  CAATGGAATAGAAATGAAGACCCAGAAATGAACCCACACACCTATGTTCA  50

seq1  CTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCA  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCA  100

seq1  TTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATG  150
      ||||||||||||||||||| |||||||||  |||| ||||||||||||||
seq2  TTTTCAACAAATGGTGCTGACACAACTGGCAGTTAACATGTAGAAGAATG  150

seq1  CGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  200
       ||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAACTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  200

seq1  CAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  250

seq1  TGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGA  300
      ||||| |||| || |||||||||| |||||||| |||||||||| |||||
seq2  TGGGG-AAAGTCTCGAAGATATGGGCACAGGGGGAAAATTCCTGAATAGA  299

seq1  ACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCAT  350
      |||||||||||||||||||||||||  |||||  ||||||||||||| ||
seq2  ACAGCAATGGCTTGTGCTGTAAGATCAAGAATCAACAAATGGGACCTAAT  349

seq1  GAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA  400
       ||| ||||||||||||| ||||||||||||||| ||||| |||||||||
seq2  AAAATTGCAAAGCTTCTGTAAGGCAAAAGACACCATCAATCAGACAAAAA  399

seq1  GG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG  449
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG  449

seq1  GGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAA  499
       |||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  AGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAA  499

seq1  ATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  547
      |||||||||||||||| ||||||||||  ||||||| |||||||||||
seq2  ATCAAATAACCCCATT-AAAAATGGGGTGCAGAGCTTAACAAAGAATT  546

seq1: chr7_90338103_90339298
seq2: B6Ng01-166I09.g_65_1233

seq1  GAATTCTCTGAACAGTGTCTATCTGCAATGTGCCATTGATGACTTCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAACAGTGTCTATCTGCAATGTGCCATTGATGACTTCTGTT  50

seq1  TGTGACAACTGAGGTATAAGCGCCTGTCACAAAACAGTGTTTCCTACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAACTGAGGTATAAGCGCCTGTCACAAAACAGTGTTTCCTACTGT  100

seq1  TTTCTGTTCCTGCTGTGTCTCTTAATTTTAGGTTCTGGGAATCGACAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTCCTGCTGTGTCTCTTAATTTTAGGTTCTGGGAATCGACAGCC  150

seq1  TTCATTGGATTGATGGATACACCATAGGCTGAACTGAGAGATCTTGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGATTGATGGATACACCATAGGCTGAACTGAGAGATCTTGGATA  200

seq1  ATAAAAGGTTGGGGAATTTAAGGTTTTGTGTCCCAGGAGAGATCCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGTTGGGGAATTTAAGGTTTTGTGTCCCAGGAGAGATCCCAGAA  250

seq1  AGTTGCTACCACATGGAAGGTGAGGTCAGAGAAAGCAGCAGAACAACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTACCACATGGAAGGTGAGGTCAGAGAAAGCAGCAGAACAACTTA  300

seq1  GCAGGGCACACGTGATGCCTGGCCAGTATGGTACTTTCAGACAGAACGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCACACGTGATGCCTGGCCAGTATGGTACTTTCAGACAGAACGGG  350

seq1  CTGACTCAATGCAGGATTCGGAGTGGCTTCTAGGAGGACGTGGGCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCAATGCAGGATTCGGAGTGGCTTCTAGGAGGACGTGGGCTTGAA  400

seq1  AACTGCTTCCTGTGTCCCTTCTATAAACACAGAGTGAAACATACTTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTCCTGTGTCCCTTCTATAAACACAGAGTGAAACATACTTGTCT  450

seq1  TTTGTAGTAATAGAAAAATATAAAAATGAAACTAATGATTAAGAATGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGTAATAGAAAAATATAAAAATGAAACTAATGATTAAGAATGTGG  500

seq1  TATCTTAAAAGCAAAATAAATAGCGTGTTGAGAGCAAAAGTACCTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAAAGCAAAATAAATAGCGTGTTGAGAGCAAAAGTACCTTGCTT  550

seq1  GTATTTGGGTCACCCTGGGTAGCCTGTCTATATTAAACTCATAATCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGGTCACCCTGGGTAGCCTGTCTATATTAAACTCATAATCCACA  600

seq1  TACTCCATTGAACTCTAAACTTATTTATGAAAACCCATCAGAAGGAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCATTGAACTCTAAACTTATTTATGAAAACCCATCAGAAGGAGATA  650

seq1  ATTAAGGAGATAAAGGTTTCTGCAACTTGTTGGATGTTGGTTAAAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGAGATAAAGGTTTCTGCAACTTGTTGGATGTTGGTTAAAGAATA  700

seq1  AATTTTGACTAAGAAAAAAATAAGACAAAATATTAGTTTTAAATGATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGACTAAGAAAAAAATAAGACAAAATATTAGTTTTAAATGATTTT  750

seq1  AGTTTTACTTATGTGCATATATGTGAGTCAGAGACGGAGTATGTGCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACTTATGTGCATATATGTGAGTCAGAGACGGAGTATGTGCACAT  800

seq1  GCAGGCAGTTGCCTGTGGATGCCAGAGGAAGGTGTCAGATCATGAGTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGTTGCCTGTGGATGCCAGAGGAAGGTGTCAGATCATGAGTAGC  850

seq1  TTCAATTACAGGTTGTTGTGAACCACTGGATATGTGGACAGGGAAGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTACAGGTTGTTGTGAACCACTGGATATGTGGACAGGGAAGAAAA  900

seq1  TTCAGATTTTCTGCAAGTGCAGCCTTTCTCCTAACCACTGAGATAATTCT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCAGATTTTCTGCAAGTGCAGCCTTTCTCCTAACCACTGAGAT-ATTCT  949

seq1  GTAGCTGAGAAACCAAATCTTATGAAAGTAGTTAAGTACACGTTTTATAA  1000
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  GTAGCTGAGAAACCAAATC-TATGAAAGTAGTTAAGTACACG-TTTATAA  997

seq1  CCACTTTAATAGAGGCATAGGTAGTCATTAAAATAGAACTTTTAAGGCAA  1050
      ||||||| ||||| ||||| ||||||||  |||||| |||||| |||| |
seq2  CCACTTT-ATAGA-GCATA-GTAGTCAT--AAATAG-ACTTTT-AGGC-A  1039

seq1  AATTGAAAGCACTTAAGATATGATAGTAACTGAAAAGTGAGGTACACAG-  1099
      ||||| |||||| || |||||||||||||||| ||||||| |||| ||| 
seq2  AATTG-AAGCAC-TAGGATATGATAGTAACTG-AAAGTGA-GTAC-CAGG  1084

seq1  ---TTATATTTATACATTAATAAGTATGCAAGCTCTTTTTACACAGAAAC  1146
         |||| |||||||||||| ||| |||| ||| || |||| || | |||
seq2  CTATTAT-TTTATACATTAA-AAG-ATGCCAGC-CTCTTTA-AC-GGAAC  1128

seq1  AGAATTAGATGGGACTAGAAAAAAAAGTTATCAATGTATCAAGGGATGGA  1196
      |||  | |||  |||    |  ||||||  |||| |||||||||||||||
seq2  AGA--TTGAT--GAC----ATGAAAAGTATTCAA-GTATCAAGGGATGGA  1169