BAC Information

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BAC

Clone NameB6Ng01-167A04
Chromosome5 (Build37)7 (Build37)
Map Location 144,028,935 - 144,029,933102,233,481 - 102,234,196
singlet/doubletsingletsinglet
Overlap geneZfp316
Upstream geneMmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12
Downstream geneGm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167A04.bB6Ng01-167A04.g
ACCDH958622DH958623
length1,000476
definitionDH958622|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A04, 5' end.DH958623|Mus musculus domesticus DNA, BAC clone: B6Ng01-167A04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(144,028,935 - 144,029,933)(102,233,481 - 102,234,196)
sequence
gaattcaatcctccagatggagggagggggacgggggcggggggcgatgc
agaacatggtgctatctacctgtaaaccaagccctgggcagtgctggcca
ggcaatccgaattggtaagctcagggttcaaagagacactgcctcaaata
ataggatgaagagtgaccaacagctatgctgacctgttatctacatgcac
actgtatgtacctgcatgcacacatgcacacacaaaactgtgtacatatg
ttgcacacaaagaggaggaagaggaggcaatcgccttggctacatctctt
ccaaggccgcatgcacattttctttactgaagaatattcaactgagggat
gatgaagagtcccaatttttccccctaattcctatcccagacacacagta
gctactccagtacttattaaagacatgtccagagatctacagttaatgac
atggatactggaattttaaaaaaatatttgtgagggcacaactgtcacac
tccacaataggctggccacagcttgaggaaagggtacaccaaactaaaac
ccaccccagaagtcatgaagagtctctgtcaccagagaggacagtggata
aaattgagtctgtgcacccgtcctgtgatggttactgttgcacacttgac
aggatctgaagttacaaaagagaagatgcctctggaatgtctgtgaggga
gtggctagattaggttaactgaggtgggaagatctaccctaaacatgggc
agcaccatcccctaggctggggccctggtgtgaatgagaaggagagagca
ggctgagccccagcatcagtctctctgcgtggcctccgtgtctctcccac
cgtgatggggctgtacctttcaattgggagcccaagcaactacttcctcc
cttgagttgcttgtcaggacagagcataaagggaaaaagtgaaggaaaaa
aaaaagcctattaaaagctttctagctgggcggtggtggcgcactgggga

attatgtagaccaggctagccttaaactcatagagatctgcctgcctctg
cttgccaaatgctggaattaaaggcatgtcccatcatgcctggctctgcc
ttcatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatgggggggggggggggaggcgggcaggttatatataggggga
ggagagagaggaggggggggagcatttagggggggatgtatatgagtgac
agagaggcgagagggcgggcgacccgcctgtatatgtatatagatatagg
ggagagagaggagatagatatatatatgtatgtatatgtatgtatatata
taacactattatatatatatatatatatatatatatatatatatatatat
atatatatctatgtatttttttttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144028935_144029933
seq2: B6Ng01-167A04.b_47_1046

seq1  GAATTCAATCCTCCAGATGGAGGGAGGGGGACGGGGGCGGGGGGCGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTCCAGATGGAGGGAGGGGGACGGGGGCGGGGGGCGATGC  50

seq1  AGAACATGGTGCTATCTACCTGTAAACCAAGCCCTGGGCAGTGCTGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGGTGCTATCTACCTGTAAACCAAGCCCTGGGCAGTGCTGGCCA  100

seq1  GGCAATCCGAATTGGTAAGCTCAGGGTTCAAAGAGACACTGCCTCAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCCGAATTGGTAAGCTCAGGGTTCAAAGAGACACTGCCTCAAATA  150

seq1  ATAGGATGAAGAGTGACCAACAGCTATGCTGACCTGTTATCTACATGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGAAGAGTGACCAACAGCTATGCTGACCTGTTATCTACATGCAC  200

seq1  ACTGTATGTACCTGCATGCACACATGCACACACAAAACTGTGTACATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGTACCTGCATGCACACATGCACACACAAAACTGTGTACATATG  250

seq1  TTGCACACAAAGAGGAGGAAGAGGAGGCAATCGCCTTGGCTACATCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACAAAGAGGAGGAAGAGGAGGCAATCGCCTTGGCTACATCTCTT  300

seq1  CCAAGGCCGCATGCACATTTTCTTTACTGAAGAATATTCAACTGAGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCGCATGCACATTTTCTTTACTGAAGAATATTCAACTGAGGGAT  350

seq1  GATGAAGAGTCCCAATTTTTCCCCCTAATTCCTATCCCAGACACACAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAGTCCCAATTTTTCCCCCTAATTCCTATCCCAGACACACAGTA  400

seq1  GCTACTCCAGTACTTATTAAAGACATGTCCAGAGATCTACAGTTAATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCCAGTACTTATTAAAGACATGTCCAGAGATCTACAGTTAATGAC  450

seq1  ATGGATACTGGAATTTTAAAAAAATATTTGTGAGGGCACAACTGTCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACTGGAATTTTAAAAAAATATTTGTGAGGGCACAACTGTCACAC  500

seq1  TCCACAATAGGCTGGCCACAGCTTGAGGAAAGGGTACACCAAACTAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAATAGGCTGGCCACAGCTTGAGGAAAGGGTACACCAAACTAAAAC  550

seq1  CCACCCCAGAAGTCATGAAGAGTCTCTGTCACCAGAGAGGACAGTGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCAGAAGTCATGAAGAGTCTCTGTCACCAGAGAGGACAGTGGATA  600

seq1  AAATTGAGTCTGTGCACCCGTCCTGTGATGGTTACTGTTGCACACTTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGTCTGTGCACCCGTCCTGTGATGGTTACTGTTGCACACTTGAC  650

seq1  AGGATCTGAAGTTACAAAAGAGAAGATGCCTCTGGAATGTCTGTGAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGAAGTTACAAAAGAGAAGATGCCTCTGGAATGTCTGTGAGGGA  700

seq1  GTGGCTAGATTAGGTTAACTGAGGTGGGAAGATCTACCCTAAACATGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGATTAGGTTAACTGAGGTGGGAAGATCTACCCTAAACATGGGC  750

seq1  AGCACCATCCCCTAGGCTGGGGCCCTGGTGTGAATGAGAAGGAGAGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATCCCCTAGGCTGGGGCCCTGGTGTGAATGAGAAGGAGAGAGCA  800

seq1  GGCTGAGCCCCAGCATCAGTCTCTCTGCGTGGCCTCCGTGTCTCTCCCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGCCCCAGCATCAGTCTCTCTGCGTGGCCTCCGTGTCTCTCCCAC  850

seq1  CGTGAT-GGGCTGTACCTTTCAACTGGGAGCCCAAGCAACTACTTCCTCC  899
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  CGTGATGGGGCTGTACCTTTCAATTGGGAGCCCAAGCAACTACTTCCTCC  900

seq1  CTTGAGTTGCTTGTCAGGACAGAGCAAGAAGGGAAAAAGTGAAGGAAAAA  949
      ||||||||||||||||||||||||||  ||||||||||||||||| ||||
seq2  CTTGAGTTGCTTGTCAGGACAGAGCATAAAGGGAAAAAGTGAAGG-AAAA  949

seq1  AAAAAAGCCTATTAAAAGC-CTCTAGCTGGGCGGTGGTGGCGCACTTGGG  998
      |||||||||||||||||||  ||||||||||||||||||||||||| |||
seq2  AAAAAAGCCTATTAAAAGCTTTCTAGCTGGGCGGTGGTGGCGCACTGGGG  999

seq1  A  999
      |
seq2  A  1000

seq1: chr7_102233481_102234196
seq2: B6Ng01-167A04.g_175_530 (reverse)

seq1  ATATATATATATATATATATATATATATATATATATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATATATATATATATATATATATATATATATATATATATATATATATA-  49

seq1  ATA----TATATACATACATACATATACATATATGTTTATACATATGTTT  96
      |||    |||||| ||||||||||||||          |||||||  | |
seq2  ATAGTGTTATATATATACATACATATAC----------ATACATA--TAT  87

seq1  ATATATATATCATATTCTTCATCTAGGCATTTGTGTACACATGTACACAC  146
      |||| ||| || | |   ||  ||    || | | || |||| ||||  |
seq2  ATATCTATCTCCTCTCTCTCCCCT----ATATCTATATACATATACAGGC  133

seq1  ATACTTGGGATAAATGTAGCATTGACTTTAATGATTCATTTCTGAGTCAC  196
             ||      || ||     ||        ||   |||  |||||
seq2  -------GG------GTCGCCCGCCCT-------CTCGCCTCTCTGTCAC  163

seq1  AGAATTTTGAATATTTTTGTTCTTTTTATGGTTTGTTTTCAAAATTATTC  246
                ||||   |   |   | |     || |  |     |  ||
seq2  --------TCATATACATCCCCCCCTAA----ATGCTCCCCCCCCTCCTC  201

seq1  TATAAAGTAAAGAATTACTTTTATTGGTTTGTGACACTAGGTTTGAAGAT  296
      | |                         |  |  | |||  | |  |   
seq2  TCT------------------------CTCCTCCCCCTA--TATATAACC  225

seq1  TGGCCTCATTTTCCTGAATTGGCAGCTGAGTGAACATGAATTGCCCAGAG  346
      || || | |   ||        |  |                 |||| | 
seq2  TGCCCGCCTCCCCC--------CCCC--------------CCCCCCATAT  253

seq1  CTAAGTGAAGGATAAATTTAAATGTTGAATA-AAATCTATTGAAAATATA  395
       ||        ||| || || || |   ||| | || |||   | |||||
seq2  ATA-------TATATATATATATAT---ATATATATATAT---ATATATA  290

seq1  TATATAAGTCTCTTGGTGTGCCTTGAGTCTCTGAAAGTAACCAAGATGAC  445
      ||||||  | | |                              | ||   
seq2  TATATATATATAT------------------------------ATATATA  310

seq1  TGTCTTTAAATTACTTTGAAGTTATTTAAATATCTAGAGTTAAAAGAACT  495
      | | | || ||   | |  |  ||| || |||| || |  || | |    
seq2  TATATATATATATATATATATATATATATATATATATATATATATG----  356

seq1  TTTGTTGTAAAAGTCATGATTATTCTGCAAATGTTTATTGAGCATGTATT  545
                                                        
seq2  --------------------------------------------------  356

seq1  AAGGTCCAAGGATAGGGCACTGAGGCAAGCAAAAACAACTTCCTTTAGAG  595
                                                        
seq2  --------------------------------------------------  356

seq1  ATATTAATTCTAGTGTGAGAATATTACATGAGAACATTAATTATACAGTA  645
                                                        
seq2  --------------------------------------------------  356

seq1  TGATAGGAGGTAGTATGTATCATAGGGGGAAGATATATATATATATATAT  695
                                                        
seq2  --------------------------------------------------  356

seq1  ATATATATATATATATATATG  716
                           
seq2  ---------------------  356