BAC Information

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BAC

Clone NameB6Ng01-168C22
Chromosome14 (Build37)7 (Build37)
Map Location 120,052,900 - 120,053,92425,679,214 - 25,679,706
singlet/doubletsingletsinglet
Overlap geneHs6st3
Upstream geneAbcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, LOC619601, EG621324
Downstream geneLOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168C22.bB6Ng01-168C22.g
ACCDH959489DH959490
length1,032935
definitionDH959489|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C22, 5' end.DH959490|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,052,900 - 120,053,924)(25,679,214 - 25,679,706)
sequence
gaattccacttctctaggtcatggattatgaatggaaggtaccaattttc
atcacttggaaaattcttgggtacgtgactcatcttctgagtgtaaactc
ctggaggtagtatccatagtctgctcatatgactcatctgaaagatgctg
atgaacactcttatttcagcagctctgtttacaccttattaggacaactc
agggcagcatgtccaggtaccacagcccaaatcccaactcgcttaaactg
aaactcaaatttcttcagagacactcaagctttcagtaccccagtgagca
gattcctaacgtgatcatattgaagaaacttggcttccttattttgaaag
tttgcaaccccataggaagaacaacaatataaaccaaccagacccccccc
ccccagggctcccagggactaaaccaccaaccaaagagtacacatggagt
gacccatggctccagccacatttgtagcagaggatggccttgttagacat
cagtgggaggagaggcccttagtcctatgaagactctatgccccagtgta
ggggaatgctagaatggggaagcaggagtgggtgggtgggtgagggagca
ccctcatagaagcaggaggaggggtgatgagatagggggtttctggaggg
gaaaccaggaaagggggataacatttgaaatgtaaataaaggaaatatct
tataaaaaaaattagaaaagaaagtaacttccctccattcatggctagac
cattggaaattatatattaaaaaaagccagaatcagagctgattcccatc
actaatgagccttaagcccatttaagcctaaagtagggcttctctcagtt
tcacccgaagccctttaatttggggccttattatctgaataacagtaatg
tgggtgtcattttgtattttaacttgtgtcttcttttaaagcatgactct
cagactgtattagcttcaggctgctctgagcctttctggggcgccggcgt
gggaccattcctgacgtatcgaaaaggctgaa
gaattctttgtttatctctgtatcccatttttaatagggtaacttgattc
tctggagtctaacttcttgagtttttttgcatatattggatattagctct
ctattggatgtagcattagtaaagctcttttcccaatctgttggttgcca
ttttgtcctattggcagtgtcctttgccttacagaagctttgcaatttta
tgaggttgcatttgtcgattcttgatcttaggtccttagctccgaccaca
ttctgtcactactactactttaaccacatctgttcccttttattctttcc
atctatgctggcttcctcctttttttttcactattattttttattaggta
ttttcttcatttacatttccaatgctatcccaaaagtcccccacaccctc
ccctcccactcccctacccacccacacccaattcttggcactggcattcc
cctttactggggaatattaagtttgcaagaccaaggggcctctctttcca
atgatggccaactaggccatcttctgctacatatgcagctagagacacga
gctccggggtactggttagttcataatgttgttccacctataaggttgca
gacccctttagctccttgggtactttctctagctcctccactgtgggcct
tgtgttccatccaatagctgactgtgagcatccacttctgtgtttgctag
gccccagcatagcctcacaagagacatctatatcagggtcttttcagcaa
aatcttgctggtgtatgcaatggtgtcagcatttggaggctgattatggg
atggatacccgggtatgtcagtctctagatggtccatcctttcgtctcag
ctccaaactttgtctctgtaactccttccatgggtgttttgttcccaatt
ctagaaggggcaaagtgcccacactttggtttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_120052900_120053924
seq2: B6Ng01-168C22.b_46_1074

seq1  GAATTCCACTTCTCTAGGTCATGGATTATGAATGGAAGGTACCAATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCTCTAGGTCATGGATTATGAATGGAAGGTACCAATTTTC  50

seq1  ATCACTTGGAAAATTCTTGGGTACGTGACTCATCTTCTGAGTGTAAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTGGAAAATTCTTGGGTACGTGACTCATCTTCTGAGTGTAAACTC  100

seq1  CTGGAGGTAGTATCCATAGTCTGCTCATATGACTCATCTGAAAGATGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTAGTATCCATAGTCTGCTCATATGACTCATCTGAAAGATGCTG  150

seq1  ATGAACACTCTTATTTCAGCAGCTCTGTTTACACCTTATTAGGACAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACTCTTATTTCAGCAGCTCTGTTTACACCTTATTAGGACAACTC  200

seq1  AGGGCAGCATGTCCAGGTACCACAGCCCAAATCCCAACTCGCTTAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCATGTCCAGGTACCACAGCCCAAATCCCAACTCGCTTAAACTG  250

seq1  AAACTCAAATTTCTTCAGAGACACTCAAGCTTTCAGTACCCCAGTGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAATTTCTTCAGAGACACTCAAGCTTTCAGTACCCCAGTGAGCA  300

seq1  GATTCCTAACGTGATCATATTGAAGAAACTTGGCTTCCTTATTTTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTAACGTGATCATATTGAAGAAACTTGGCTTCCTTATTTTGAAAG  350

seq1  TTTGCAACCCCATAGGAAGAACAACAATATAAACCAACCAGACCCCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAACCCCATAGGAAGAACAACAATATAAACCAACCAGACCCCCCCC  400

seq1  CCCCAGGGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAGT  450

seq1  GACCCATGGCTCCAGCCACATTTGTAGCAGAGGATGGCCTTGTTAGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATGGCTCCAGCCACATTTGTAGCAGAGGATGGCCTTGTTAGACAT  500

seq1  CAGTGGGAGGAGAGGCCCTTAGTCCTATGAAGACTCTATGCCCCAGTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAGGAGAGGCCCTTAGTCCTATGAAGACTCTATGCCCCAGTGTA  550

seq1  GGGGAATGCTAGAATGGGGAAGCAGGAGTGGGTGGGTGGGTGAGGGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGCTAGAATGGGGAAGCAGGAGTGGGTGGGTGGGTGAGGGAGCA  600

seq1  CCCTCATAGAAGCAGGAGGAGGGGTGATGAGATAGGGGGTTTCTGGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATAGAAGCAGGAGGAGGGGTGATGAGATAGGGGGTTTCTGGAGGG  650

seq1  GAAACCAGGAAA-GGGGATAACATTTGAAATGTAAATAAAGGAAATATCT  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGGAAAGGGGGATAACATTTGAAATGTAAATAAAGGAAATATCT  700

seq1  AAT-AAAAAAATTAGAAAAGAAAGTAACTTCCCTCCATTCATGGCTAGAC  748
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAAAATTAGAAAAGAAAGTAACTTCCCTCCATTCATGGCTAGAC  750

seq1  CATTGGAAATTATATATT-AAAAAAGCCAGAATCAGAGCTGATTCCCATC  797
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATTGGAAATTATATATTAAAAAAAGCCAGAATCAGAGCTGATTCCCATC  800

seq1  ACTAATGAGCCTTAAGCCCATTTAAGCCTAAAGTAGGGC-TCTCTCAGTT  846
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTAATGAGCCTTAAGCCCATTTAAGCCTAAAGTAGGGCTTCTCTCAGTT  850

seq1  TCACCCGAGGCCC-TTAATTTGGGGCCTTATTATCTGAATAACAGTAAAT  895
      |||||||| |||| |||||||||||||||||||||||||||||||| |||
seq2  TCACCCGAAGCCCTTTAATTTGGGGCCTTATTATCTGAATAACAGT-AAT  899

seq1  GTGGGTGTCATTTTGTATTTTAAACTTGTGTCTTCTTTTAAAGCATGACT  945
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGGGTGTCATTTTGTATTTT-AACTTGTGTCTTCTTTTAAAGCATGACT  948

seq1  CTCAGACTGTATTAGCTTCAGGCTGCTCTGAG-CTTTCTGTGGTGCTGCC  994
      |||||||||||||||||||||||||||||||| ||||||| || || | |
seq2  CTCAGACTGTATTAGCTTCAGGCTGCTCTGAGCCTTTCTGGGGCGCCGGC  998

seq1  GTGGAACAATTCCTGACGTATCGTAAAGGCT  1025
      |||| || ||||||||||||||| |||||||
seq2  GTGGGACCATTCCTGACGTATCGAAAAGGCT  1029

seq1: chr7_25679214_25679706
seq2: B6Ng01-168C22.g_430_932 (reverse)

seq1  TACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGAC  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACAGAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCATCTAGAGAC  50

seq1  TGCCATACCTGGGGATCCATCCCATAATCAGCCTCCAAACGTTGACACCA  100
      || |||||| ||| ||||||||||||||||||||||||| | ||||||||
seq2  TGACATACCCGGGTATCCATCCCATAATCAGCCTCCAAATGCTGACACCA  100

seq1  TTGCATACACCTTTTCAGCAAGATTTTGCTGAAAGGACCCTGATATAGCT  150
      ||||||||||     ||||||||||||||||||| ||||||||||||| |
seq2  TTGCATACAC-----CAGCAAGATTTTGCTGAAAAGACCCTGATATAGAT  145

seq1  GTCTCTTGTGAGACTATTCTTGGGCCTAGCAAACACAGAAGTGGATGCCC  200
      |||||||||||| |||| || ||||||||||||||||||||||||||| |
seq2  GTCTCTTGTGAGGCTATGCTGGGGCCTAGCAAACACAGAAGTGGATGCTC  195

seq1  ATAGTCATTTATAGGATGGATCACAGGGCCCCTAACGGAGGAGCTAGAGA  250
      | |||||  ||| ||||||| |||| |||||  |  ||||||||||||||
seq2  ACAGTCAGCTATTGGATGGAACACAAGGCCCACAGTGGAGGAGCTAGAGA  245

seq1  AAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAA  300
      |||||||||||||||||||||| ||||||||| |||||||||||||||| 
seq2  AAGTACCCAAGGAGCTAAAGGGGTCTGCAACCTTATAGGTGGAACAACAT  295

seq1  TATGAACTAACCAGTACCCCCCAGAGCTCATGACTCTAGCTGCATATGTA  350
      ||||||||||||||||  |||| |||||| || |||||||||||||||||
seq2  TATGAACTAACCAGTA--CCCCGGAGCTCGTGTCTCTAGCTGCATATGTA  343

seq1  TCAGAAGATGGCCTAGTCAGCCATCAGTGGAAAGAGAGGCCCATTGGTCT  400
       ||||||||||||||||  ||||||| ||||||||||||||| |||||||
seq2  GCAGAAGATGGCCTAGTTGGCCATCATTGGAAAGAGAGGCCCCTTGGTCT  393

seq1  TGCAAATTTTATATGCCTAAGTACAGGGGAATGCCAGGGCCAAGAAGTGA  450
      |||||| || |||| ||  |||| ||||||||||||| |||||||| || 
seq2  TGCAAACTTAATATTCCCCAGTAAAGGGGAATGCCAGTGCCAAGAATTGG  443

seq1  GAGTGGG-----------------GGGAAGGGCATGGGGGACTTTTGGGA  483
      | |||||                 ||| ||||  ||||||||||||||||
seq2  GTGTGGGTGGGTAGGGGAGTGGGAGGGGAGGGTGTGGGGGACTTTTGGGA  493

seq1  TAGCATTGGA  493
      ||||||||||
seq2  TAGCATTGGA  503