BAC Information

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BAC

Clone NameB6Ng01-169C05
Chromosome7 (Build37)
Map Location 20,594,602 - 20,595,740
singlet/doubletsinglet
Overlap geneNlrp9b
Upstream geneFoxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20
Downstream geneEG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169C05.bB6Ng01-169C05.g
ACCDH960193DH960194
length9731,100
definitionDH960193|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C05, 5' end.DH960194|Mus musculus domesticus DNA, BAC clone: B6Ng01-169C05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaaatcaacatgattgatttttatgtaaaagtttagatttgtga
ttcctttaagcttttttcagattattttagagataaataataaaatactt
gtccctttctttgtaatttctgccttccaggaagagaaacttgatgagaa
aactgccttgcatgtgtacactttgtgaatttataataagttccttactt
ataaatgtacctaggttagatgccagcaagattttgatgaagggactctg
gtatatctgtctcgtatgaggctatgccagggcctggcaaatgcagatgt
ggatgctcacagtaatctgtaagatggaacacagtgcccccaatggagaa
gctagagaaagcacccaaggagctgaaggggtctgcaaccctattggtgg
aacaacaatatgaactaaccagtacccccagagcttgtatctctagctgc
atatgtagcagaagatggcctagtcagccatcactgggaagggaggcccc
tggtattgcaaactttatatgtcccagtacacaggaatgccagggccaag
aagcaggagtgggttggtaggggagcagggcatggggggagggtataggg
aactttcgggatagcatttgaaatttgaaatgtacataaagaaaaatcta
ataaaaaataaataaaatctaaaaaaaaaatgtacctgggtgtttgggga
taatttgttttctttaccttactatataatgttatttctcataacagtat
tggggtaacacactgtttttcataatcatttactagaagaaaactaaaac
atactcacattgtagttttatactgcttgaaaatttttgctaggatatat
aagctatggaaaaaggaataagagtggagagctgaaaattgttcctttca
tacagaactatgttatgtgtgtattatgtgtaagtttgtttgattgagtt
tgtaacaaagttatcgacctgaa
gaattccttctggggctcggcagatgtcccagcaattaagagtacttgct
gctcttccagagaacctgggtcgtattcctgatactcagatggtggccca
aaaacgcctgtaactccagtttcaggggttccagtgccgccttctggcct
ctgaggatgcttgtggttatatagggatgcatgtgggcaaaccattcatg
agcataaaaaattgttaaacttttacatcttgagaagtgtatatagcctt
gtcaaatcaagcacaccttgtacaagtcccacgaggtttttattcctaaa
gatgggaagttctgtgtctcactgagcactcagttacagctgtcatgtga
ttggttactttgaagcagtgcattaataagcagaataaatttttgagcat
cctagatcctagattttgatttcaagaaatgcagacccaggccgggtagt
gttggcgcatgcctttaatctcagggtgtgattgggaggcagaggcaggt
ggatttctgagttcgaggccagcctggtctacagagtgagttccaggaca
gccagggttacacagagaaccaaaaaaaaaaaaaaaaaaaaaaatgcaga
ccctggaagaacaacatttttttttctttaaatgaaatgttgtcaaggat
aatcatttgatatgaaggcactgcatttcctccatatttcccatgtatat
atgtaaacatatgtaaatatgtctatagtcttgcttagaaagaatacaga
gggtagtaattggtgttgactgaggaaaggacacgtgagtcatgaaagag
gataaaatgtttggtttgtgtttgttattaagcatagagcacccagtatt
cccaagtggtctcccatccaagtactatccaggcctgaccctgcttagct
tccgagatcagacagattagcacagtctagcagatggcatagacaagttt
tttttttttttcaagttattctgcattacattatgtatgatgttgcatgc
acaatatgtctgttgcatgatgtgctgtcttggagtcagaagggatacag
tccttgaacggatacggtaaccctctgggatgctagatcaattcaggtct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20594602_20595740
seq2: B6Ng01-169C05.g_68_1167

seq1  GAATTCCTTCTGGGGCTCGGCAGATGTCCCAGCAATTAAGAGTACTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGGGGCTCGGCAGATGTCCCAGCAATTAAGAGTACTTGCT  50

seq1  GCTCTTCCAGAGAACCTGGGTCGTATTCCTGATACTCAGATGGTGGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCAGAGAACCTGGGTCGTATTCCTGATACTCAGATGGTGGCCCA  100

seq1  AAAACGCCTGTAACTCCAGTTTCAGGGGTTCCAGTGCCGCCTTCTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGCCTGTAACTCCAGTTTCAGGGGTTCCAGTGCCGCCTTCTGGCCT  150

seq1  CTGAGGATGCTTGTGGTTATATAGGGATGCATGTGGGCAAACCATTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATGCTTGTGGTTATATAGGGATGCATGTGGGCAAACCATTCATG  200

seq1  AGCATAAAAAATTGTTAAACTTTTACATCTTGAGAAGTGTATATAGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAAAATTGTTAAACTTTTACATCTTGAGAAGTGTATATAGCCTT  250

seq1  GTCAAATCAAGCACACCTTGTACAAGTCCCACGAGGTTTTTATTCCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATCAAGCACACCTTGTACAAGTCCCACGAGGTTTTTATTCCTAAA  300

seq1  GATGGGAAGTTCTGTGTCTCACTGAGCACTCAGTTACAGCTGTCATGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAAGTTCTGTGTCTCACTGAGCACTCAGTTACAGCTGTCATGTGA  350

seq1  TTGGTTACTTTGAAGCAGTGCATTAATAAGCAGAATAAATTTTTGAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTACTTTGAAGCAGTGCATTAATAAGCAGAATAAATTTTTGAGCAT  400

seq1  CCTAGATCCTAGATTTTGATTTCAAGAAATGCAGACCCAGGCCGGGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATCCTAGATTTTGATTTCAAGAAATGCAGACCCAGGCCGGGTAGT  450

seq1  GTTGGCGCATGCCTTTAATCTCAGGGTGTGATTGGGAGGCAGAGGCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCGCATGCCTTTAATCTCAGGGTGTGATTGGGAGGCAGAGGCAGGT  500

seq1  GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA  550

seq1  GCCAGGGTTACACAGAGAACCAAAAAAAAAAAAAAAAAAAAAAATGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGTTACACAGAGAACCAAAAAAAAAAAAAAAAAAAAAAATGCAGA  600

seq1  CCCTGGAAGAACAACATTTTTTTTTCTTTAAATGAAATGTTGTCAAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAAGAACAACATTTTTTTTTCTTTAAATGAAATGTTGTCAAGGAT  650

seq1  AATCATTTGATATGAAGGCACTGCATTTCCTCCATATTTCCCATGTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTGATATGAAGGCACTGCATTTCCTCCATATTTCCCATGTATAT  700

seq1  ATGTAAACATATGTAAATATGTCTATAGTCTTGCTTAGAAAGAATACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACATATGTAAATATGTCTATAGTCTTGCTTAGAAAGAATACAGA  750

seq1  GGGTAGTAATTGGTGTTGACTGAGGAAAGGACACGTGAGTCATGAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTAATTGGTGTTGACTGAGGAAAGGACACGTGAGTCATGAAAGAG  800

seq1  GATAAAATGTTTGGTTTTGTGTTTGTTATTAAGCATAGAGCACCCAGTAT  850
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATAAAATGTTTGG-TTTGTGTTTGTTATTAAGCATAGAGCACCCAGTAT  849

seq1  TCCCAAGTGGTCTCCCATCCAAGTACTATCCAGGCCTGACCCTGCTTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGGTCTCCCATCCAAGTACTATCCAGGCCTGACCCTGCTTAGC  899

seq1  TTCCGAGATCAGACAAGATTAAGCACAGTCTAGGCAGGATGGCCATAGAC  950
      |||||||||||||| ||||| ||||||||||| ||| ||||| |||||||
seq2  TTCCGAGATCAGAC-AGATT-AGCACAGTCTA-GCA-GATGG-CATAGAC  944

seq1  AAAGTTTTTTTTTTTTTTTCCAAGTTTTATATCTGCATTTACATTTATTG  1000
       |||||||||||||||||  |||||| |   |||||| |||||||   ||
seq2  -AAGTTTTTTTTTTTTTT--CAAGTTAT---TCTGCA-TTACATT--ATG  985

seq1  TATGGATGTTTTGCCATGCAC-ATATGTCTGTCTGCTATGTATGTGCCTG  1049
      ||| ||||||    ||||||| |||||||||| ||| ||| ||||||   
seq2  TAT-GATGTT---GCATGCACAATATGTCTGT-TGC-ATG-ATGTGC--T  1026

seq1  GTCCCTGTGGAGGTCAGAGAGGGTATCAAGTCCACTGGAACAGGAGTTAC  1099
      |||    |||| |||||| |||| ||  ||||  || |||| |||  |||
seq2  GTC---TTGGA-GTCAGA-AGGG-ATACAGTC--CTTGAAC-GGA--TAC  1065

seq1  AGTTACCACTCTGTGGATGCTAAGATTCAAATTCAGGTCT  1139
       || ||| ||||| ||||||| ||||   |||||||||||
seq2  GGTAACC-CTCTG-GGATGCT-AGAT--CAATTCAGGTCT  1100