BAC Information

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BAC

Clone NameB6Ng01-169I14
Chromosome7 (Build37)
Map Location 5,754,086 - 5,917,553
singlet/doubletdoublet
Overlap geneV1rd1, LOC100041647, V1rd11
Upstream geneUbe2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637
Downstream geneLOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169I14.bB6Ng01-169I14.g
ACCDH960489DH960490
length9931,224
definitionDH960489|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I14, 5' end.DH960490|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,917,016 - 5,917,553)(5,754,086 - 5,755,332)
sequence
gaattcacaattatcttttttataactcttcttttttcattaatttaatt
atttgctttacatccagatcatatcttcccctcactcctctcctttcagt
ccctccttctcaactccaattcccctatgcctcctctctttctcttcaga
ggagaagaaacgtgttatggatatcaatacactttgctgtatgaaggtat
agggctgggcacttctattgaagctaaacagtggcatcctattaggggaa
agggatccaaaggctggcaacagttaaaaacagcccctcctcctcctaga
gttcctacatgaggatcattctgaacttctgttacatatgcataggggta
ctaggtccgtcccatacatattctctggttagcaattcagtctcttttag
ccctaggtgcccaggttattttaatttgcgctctctctctctctctctct
ctctctttctccctcttcctctccctccccctctccctctccctcccccc
tacccctcccccctctctctgtgtatgtgtgttctgacttctctggctct
ttcaatctttcctcccatacttccacaaaattccctgagccctgcctata
tatttggcttggatcactgaatctgtttctatcagatgatgggaaaagcc
tctccgaagaccgttatgctaggctcctatctgcaagtataaaagattat
tattaaaagtgtcataggtggggcagaagcaacatagcttctgggacagg
gtccgttttgggcctgcatcttcagccagagggcagagctgagacccaga
cccctgagctctttccctgacagaagagaggtggcctccagggagaactc
tgtcctcaggaccaggtaggaacgtcatcttgtatcccggtcccaaagct
cagtctgcacaggagagcatccaaagagacagtctgtgcaggagagcacg
agggtgccgaagcaacacagcttctgggacagggtccttttag
gaattcctggtgctagctggacatgttcttatgaggagataggaagttta
ccctgcatcctggccagtaggttacatgactatcacagggtggcagagct
gggggatggactggctctgtgtgtacctgtaagatgcagtcctagagcaa
ggcaggatcagtccttctgctggtatcaggatgagatttttttcagggtt
tggacatgttttgaccttactgtccctctgtaatggctccccctgtcaaa
tagatttccatactgacatgatgcgcagagaacaatgacccttacaatcc
ctaaatatcaacagtaagggagaaatggtggggaagcttagagccaggag
ttttgtgacatacctcaaccagagacaagattccacaaaggaaatgtgaa
atgaaatactaatacaatttagagtatatgagctcacaaatgtgaccacc
agcatcaggatggtgtgggctgctctggtctcagcatggcctctgttgtt
ttgattgaccttatgtatgtggttcattctctggtggtgtctgtttaggt
gaatcaccatggagacactggtccaggccatgatgcttaggaatatgatg
tcatgggaaaaccgcaagaaattcatgtctacactgaccccagagatgga
gcatattgaattgcctttagaatcagagtcattgtgtgatttctgtggac
cactgacattcattagcatgtaagcattatttaagacactgaacaaccag
cagctgtaacaacaatagcttacaaccttgggggatatttcgctgaacat
gaccctagcccaggtaccaggaacaagagtgacaaactggtatgtactga
ggacacaggtggagcacatgattgtgcctcgagccacaggtgaaagaagt
atgcaagtttacatttgaggtcagttggaggcttcctgggaacaatatca
gtagatcatatgaatatgcaaagagaaggagcatgattgcattggctaca
gcaagtgatagaattgacctgtatggctccagtctgaatcagtcagaatt
gagaagagttatggacaaacagaagaagtggccacagttccaaacacaac
aatgctagacaaagaatctgaagagcaacattttcattgtttccagagac
acctgggagatagctctatagcattggttaggatcacgttagcaggctgt
ctcagaatctcccatatctaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5917016_5917553
seq2: B6Ng01-169I14.b_46_583 (reverse)

seq1  GTCAGAACACACATACACAGAGAGAGGGGGGAGGGGAAGGGGGGAGGGAG  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTCAGAACACACATACACAGAGAGAGGGGGGAGGGGTAGGGGGGAGGGAG  50

seq1  AGGGAGAGGGGGAGGGAGAGGAAGAGGGAGAAAGAGAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGGGGGAGGGAGAGGAAGAGGGAGAAAGAGAGAGAGAGAGAGAG  100

seq1  AGAGAGAGCGCAAATTAAAATAACCTGGGCACCTAGGGCTAAAAGAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGCGCAAATTAAAATAACCTGGGCACCTAGGGCTAAAAGAGACT  150

seq1  GAATTGCTAACCAGAGAATATGTATGGGACGGACCTAGTACCCCTATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTAACCAGAGAATATGTATGGGACGGACCTAGTACCCCTATGCA  200

seq1  TATGTAACAGAAGTTCAGAATGATCCTCATGTAGGAACTCTAGGAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACAGAAGTTCAGAATGATCCTCATGTAGGAACTCTAGGAGGAGG  250

seq1  AGGGGCTGTTTTTAACTGTTGCCAGCCTTTGGATCCCTTTCCCCTAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGTTTTTAACTGTTGCCAGCCTTTGGATCCCTTTCCCCTAATAG  300

seq1  GATGCCACTGTTTAGCTTCAATAGAAGTGCCCAGCCCTATACCTTCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCACTGTTTAGCTTCAATAGAAGTGCCCAGCCCTATACCTTCATAC  350

seq1  AGCAAAGTGTATTGATATCCATAACACGTTTCTTCTCCTCTGAAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTGTATTGATATCCATAACACGTTTCTTCTCCTCTGAAGAGAAA  400

seq1  GAGAGGAGGCATAGGGGAATTGGAGTTGAGAAGGAGGGACTGAAAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGCATAGGGGAATTGGAGTTGAGAAGGAGGGACTGAAAGGAGA  450

seq1  GGAGTGAGGGGAAGATATGATCTGGATGTAAAGCAAATAATTAAATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGGGGAAGATATGATCTGGATGTAAAGCAAATAATTAAATTAAT  500

seq1  GAAAAAAGAAGAGTTATAAAAAAGATAATTGTGAATTC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAAGAGTTATAAAAAAGATAATTGTGAATTC  538

seq1: chr7_5754086_5755332
seq2: B6Ng01-169I14.g_69_1292

seq1  GAATTCCTGGTGCTAGCTGGACATGTTCTTATGAGGAGATAGGAAGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTGCTAGCTGGACATGTTCTTATGAGGAGATAGGAAGTTTA  50

seq1  CCCTGCATCCTGGCCAGTAGGTTACATGACTATCACAGGGTGGCAGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATCCTGGCCAGTAGGTTACATGACTATCACAGGGTGGCAGAGCT  100

seq1  GGGGGATGGACTGGCTCTGTGTGTACCTGTAAGATGCAGTCCTAGAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATGGACTGGCTCTGTGTGTACCTGTAAGATGCAGTCCTAGAGCAA  150

seq1  GGCAGGATCAGTCCTTCTGCTGGTATCAGGATGAGATTTTTTTCAGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGATCAGTCCTTCTGCTGGTATCAGGATGAGATTTTTTTCAGGGTT  200

seq1  TGGACATGTTTTGACCTTACTGTCCCTCTGTAATGGCTCCCCCTGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGTTTTGACCTTACTGTCCCTCTGTAATGGCTCCCCCTGTCAAA  250

seq1  TAGATTTCCATACTGACATGATGCGCAGAGAACAATGACCCTTACAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCCATACTGACATGATGCGCAGAGAACAATGACCCTTACAATCC  300

seq1  CTAAATATCAACAGTAAGGGAGAAATGGTGGGGAAGCTTAGAGCCAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATCAACAGTAAGGGAGAAATGGTGGGGAAGCTTAGAGCCAGGAG  350

seq1  TTTTGTGACATACCTCAACCAGAGACAAGATTCCACAAAGGAAATGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGACATACCTCAACCAGAGACAAGATTCCACAAAGGAAATGTGAA  400

seq1  ATGAAATACTAATACAATTTAGAGTATATGAGCTCACAAATGTGACCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATACTAATACAATTTAGAGTATATGAGCTCACAAATGTGACCACC  450

seq1  AGCATCAGGATGGTGTGGGCTGCTCTGGTCTCAGCATGGCCTCTGTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGGATGGTGTGGGCTGCTCTGGTCTCAGCATGGCCTCTGTTGTT  500

seq1  TTGATTGACCTTATGTATGTGGTTCATTCTCTGGTGGTGTCTGTTTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGACCTTATGTATGTGGTTCATTCTCTGGTGGTGTCTGTTTAGGT  550

seq1  GAATCACCATGGAGACACTGGTCCAGGCCATGATGCTTAGGAATATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCATGGAGACACTGGTCCAGGCCATGATGCTTAGGAATATGATG  600

seq1  TCATGGGAAAACCGCAAGAAATTCATGTCTACACTGACCCCAGAGATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGAAAACCGCAAGAAATTCATGTCTACACTGACCCCAGAGATGGA  650

seq1  GCATATTGAATTGCCTTTAGAATCAGAGTCATTGTGTGATTTCTGTGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTGAATTGCCTTTAGAATCAGAGTCATTGTGTGATTTCTGTGGAC  700

seq1  CACTGACATTCATTAGCATGTAAGCATTATTTAAGACACTGAACAACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACATTCATTAGCATGTAAGCATTATTTAAGACACTGAACAACCAG  750

seq1  CAGCTGTAACAACAATAGCTTACAACCTTGGGGGATATTTCGCTGAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAACAACAATAGCTTACAACCTTGGGGGATATTTCGCTGAACAT  800

seq1  GACCCTAGCCCAGGTACCAGGAACAAGAGTGACAAACTGGTATGTACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTAGCCCAGGTACCAGGAACAAGAGTGACAAACTGGTATGTACTGA  850

seq1  GGACACAGGTGGAGCACATGATTGTGCCTCGAGCCACCAGGTGAAAGAAG  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGACACAGGTGGAGCACATGATTGTGCCTCGAGCCA-CAGGTGAAAGAAG  899

seq1  TATGCAAGTTTACATTTGAGGTCAGTTGGAGGCTTCCTGGGAACAATATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAGTTTACATTTGAGGTCAGTTGGAGGCTTCCTGGGAACAATATC  949

seq1  AGTAAGATCATATGAATATGCAAAGAGAAGGAGCATGAATGCATTGGCTA  1000
      ||| |||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGT-AGATCATATGAATATGCAAAGAGAAGGAGCATGATTGCATTGGCTA  998

seq1  CAGCCAAGTTGATTAGAA-TGACCTGTATTGGCCTCAGTCTGGAGTCAGT  1049
      ||| |||| ||| ||||| ||||||||| ||||  |||||| || |||||
seq2  CAG-CAAG-TGA-TAGAATTGACCTGTA-TGGCTCCAGTCT-GAATCAGT  1043

seq1  CAAGATTTGAGAGAAGTTATGGACAAACAGAAGGATGTTGCCCACAGTCC  1099
      | ||| ||||||  ||||||||||||||||||| |   || ||||||| |
seq2  C-AGAATTGAGAAGAGTTATGGACAAACAGAAGAA--GTGGCCACAGTTC  1090

seq1  CAACCACAACATGGCAAAGCAAAAGGATCTGAAGAGCCAACATTTCCATG  1149
      ||| |||||||  ||  ||  |||| |||||||||| |||||||| ||| 
seq2  CAAACACAACAATGC-TAGACAAAGAATCTGAAGAG-CAACATTTTCATT  1138

seq1  GTTTTCAGGAGACAACCTGGAGATGGCTTCATAGCACAGTGGTGTAAGGA  1199
      |||| || |||||| |  |||||| |||  ||||||  |    || ||||
seq2  GTTTCCA-GAGACACCTGGGAGATAGCTCTATAGCATTG----GTTAGGA  1183

seq1  TCAGGTTAGACAGTGCTGTCCTCAAGAATCTTCTCAATTATCTAAGAT  1247
      ||| ||||| ||| ||||| ||| |||||| || ||  ||||||||||
seq2  TCACGTTAG-CAG-GCTGT-CTC-AGAATC-TCCCA--TATCTAAGAT  1224