BAC Information

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BAC

Clone NameB6Ng01-169J05
Chromosome7 (Build37)
Map Location 12,687,621 - 12,688,808
singlet/doubletsinglet
Overlap geneLOC100042433
Upstream geneLOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075
Downstream geneV1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169J05.bB6Ng01-169J05.g
ACCDH960519DH960520
length1,2451,152
definitionDH960519|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J05, 5' end.DH960520|Mus musculus domesticus DNA, BAC clone: B6Ng01-169J05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataagttagactgaagaaaatcaaacaacactattaaagacag
ggtacagagctgaaccaagaattctcaactgaggaatactgaatggctta
gaagcacctaaaccaattttcaacatccttagtcatcagggaaatgcaaa
tcacaaaaaccctgagattccacctcacaccaatcagaatggctaagatc
aaaatctcaggggacagcagatgttggctaggatgtggagaaagaggaat
acttctccattgttgttgggattgcaagctggtacaacccttctgtaaat
cactctggcggttcctcagaaaattggacataatattacctgaggatcca
gctatacccttcctgggcatatacccaggagatgctacaacatataacaa
ggacacaagctccactatgtttatagcagccttatttataatagccagaa
ggtggaaaaaacccagattgtccttcaatagaggaatggatacagaacat
gtggtacatttacacaatagagtactactcagctattaaaaaatgtgact
tcatgaatttcttaggcaagtggatggagcacagggtccccaatgaaggg
gctggagaaaggacccaaggagttgaaggagtttgtagccccataggaga
aacaacaatatgaactaaccagtatgccctgagctcccagggactaaacc
accaaccaaagagtacacagatgggactcatggttccagctgcatatgaa
gcaaagtgtgtcccagtcggtcatcaatgggaggagaggcccttgttcct
gtgaagcctctatgccccagtgtaggggaatgccagggctaggaagcagt
aatgggtgtgttggtgaccagggggattaggggagcaggttttcagacgg
gaaaccatgaaagggaaacatttgaaatgtaaataaagaaaatatctaat
aaatataaaaatatggtaattaaaagaaagaaagaaattattctgagtga
ggtatctattacaaagacacacatggtatgcacttactgatagtagatat
tagccccaaagctccagaatacccaggataccattcaagaccacaagagc
tcagaagaattccaagtgtggatgcttgtcttcttgaagggaataaatct
ggagggaatttgccaccgagttaagcgaactgagaagacctctgagatgt
ctcatctgagatcactcattatcagtcccacaggtctgatcacca
gaattccagaaagtgttgagaccatcttcattgtctttagtctgatctag
cctagagaataatcctggttttacatccatagagacatcttcagaggagt
gtgccctcagggactgtactgagtactgaaagtgcctttacttgcttttc
tggcactctgggtgattgcataagaaacagctctatcttcaggctcagaa
tattgatctgtttggataatggaaagaggacccatcacctctccaggaat
attaacaccactatttctttcactagcattgcaggtattgttgcagccat
tttcactgttctcatttcctgtgctaataagacagtctatgaaactgtgt
cccacataacacccctcttctctccagcatctagacttacctgttgccaa
ggacatgtcttggtgtatctgcaagtatgaattctcttgaatttacattg
gtgttgcttgctgttgcttcaaatatttgatgacttcttttaaagacatg
ctctcagaaaagagggcttcctgcccctgcatagagacaaggacctgtaa
acaaaactaagtgatcattgttgctgaatctgtggatgacagaatacctg
ccctcagtctacttgcacaggatcactggcctatgagttagctcatttgt
ctagccctaatatctagtggtgttgcctggacattcacaaattctgttct
ttaaagtcactattcacactgtgtttgcaaataatgagtcactttgcaaa
ggaaaataaaatattaatttcctatgcgctttggccataatattttcttc
aactattcaatgcattagaagatcaaatgaagtctgtccaattttcaaag
taggatgatccctttcaaaaaaggttgccccttcatgcagacattatttc
ttctcccactcagatactgcaactactacaaaatagctgacttggagaaa
acacaaagtgggcagaaaaagcaaaagaaaatagttctgagactgggagc
taaaagaacctataaaatatctgaacagattccctgagtctccatctctg
agtccctcttaccattgaagagtgtctgcttgataatgtggtttgtaaaa
aaaaatttgctcttgctgaagttttgttcctcatttagttcattgtaatc
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12687621_12688808
seq2: B6Ng01-169J05.g_67_1218

seq1  GAATTCCAGAAAGTGTTGAGACCATCTTCATTGTCTTTAGTCTGATCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGTGTTGAGACCATCTTCATTGTCTTTAGTCTGATCTAG  50

seq1  CCTAGAGAATAATCCTGGTTTTACATCCATAGAGACATCTTCAGAGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGAATAATCCTGGTTTTACATCCATAGAGACATCTTCAGAGGAGT  100

seq1  GTGCCCTCAGGGACTGTACTGAGTACTGAAAGTGCCTTTACTTGCTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTCAGGGACTGTACTGAGTACTGAAAGTGCCTTTACTTGCTTTTC  150

seq1  TGGCACTCTGGGTGATTGCATAAGAAACAGCTCTATCTTCAGGCTCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTCTGGGTGATTGCATAAGAAACAGCTCTATCTTCAGGCTCAGAA  200

seq1  TATTGATCTGTTTGGATAATGGAAAGAGGACCCATCACCTCTCCAGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCTGTTTGGATAATGGAAAGAGGACCCATCACCTCTCCAGGAAT  250

seq1  ATTAACACCACTATTTCTTTCACTAGCATTGCAGGTATTGTTGCAGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACCACTATTTCTTTCACTAGCATTGCAGGTATTGTTGCAGCCAT  300

seq1  TTTCACTGTTCTCATTTCCTGTGCTAATAAGACAGTCTATGAAACTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGTTCTCATTTCCTGTGCTAATAAGACAGTCTATGAAACTGTGT  350

seq1  CCCACATAACACCCCTCTTCTCTCCAGCATCTAGACTTACCTGTTGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATAACACCCCTCTTCTCTCCAGCATCTAGACTTACCTGTTGCCAA  400

seq1  GGACATGTCTTGGTGTATCTGCAAGTATGAATTCTCTTGAATTTACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGTCTTGGTGTATCTGCAAGTATGAATTCTCTTGAATTTACATTG  450

seq1  GTGTTGCTTGCTGTTGCTTCAAATATTTGATGACTTCTTTTAAAGACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCTTGCTGTTGCTTCAAATATTTGATGACTTCTTTTAAAGACATG  500

seq1  CTCTCAGAAAAGAGGGCTTCCTGCCCCTGCATAGAGACAAGGACCTGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAAAAGAGGGCTTCCTGCCCCTGCATAGAGACAAGGACCTGTAA  550

seq1  ACAAAACTAAGTGATCATTGTTGCTGAATCTGTGGATGACAGAATACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTAAGTGATCATTGTTGCTGAATCTGTGGATGACAGAATACCTG  600

seq1  CCCTCAGTCTACTTGCACAGGATCACTGGCCTATGAGTTAGCTCATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTCTACTTGCACAGGATCACTGGCCTATGAGTTAGCTCATTTGT  650

seq1  CTAGCCCTAATATCTAGTGGTGTTGCCTGGACATTCACAAATTCTGTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCTAATATCTAGTGGTGTTGCCTGGACATTCACAAATTCTGTTCT  700

seq1  TTAAAGTCACTATTCACACTGTGTTTGCAAATAATGAGTCACTTTGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCACTATTCACACTGTGTTTGCAAATAATGAGTCACTTTGCAAA  750

seq1  GGAAAATAAAATATTAATTTCCTATGCGCTTTGGCCATAATATTTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAAAATATTAATTTCCTATGCGCTTTGGCCATAATATTTTCTTC  800

seq1  AACTATTCAATGCATTAGAAGATCAAATGAAGTCTGTCCAATTTTCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCAATGCATTAGAAGATCAAATGAAGTCTGTCCAATTTTCAAAG  850

seq1  TAGGATGATCCCTTTCAAAAAAGGTTGCCCCTTCATGCAGACATTATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGATCCCTTTCAAAAAAGGTTGCCCCTTCATGCAGACATTATTTC  900

seq1  TTCTCCCACTCAAGATACTGCAACTACTACAAAATAGCTGACTTGGAGAA  950
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  TTCTCCCACTC-AGATACTGCAACTACTACAAAATAGCTGACTTGGAG-A  948

seq1  AAACAACCAAAGGTGGGCAAGAAAAAGCAAAAAGAAAATAGGTCTGGAGA  1000
      |||||  |||| |||||| ||||||||| |||||||||||| ||| ||||
seq2  AAACA--CAAA-GTGGGC-AGAAAAAGC-AAAAGAAAATAGTTCT-GAGA  992

seq1  CTGGGAGGCCTAAAAGAACCTATAAAATATCTGACACAGAATTCCCTGAG  1050
      |||||||  ||||||||||||||||||||||||| |||| ||||||||| 
seq2  CTGGGAG--CTAAAAGAACCTATAAAATATCTGA-ACAG-ATTCCCTGA-  1037

seq1  GTCTTCCATCTCTGGAGTCCCTCTTACCCATTGGAAGAAGTTGTCTGCTT  1100
      ||| ||||||||| |||||||||||| ||||| |||||   ||||||| |
seq2  GTC-TCCATCTCT-GAGTCCCTCTTA-CCATT-GAAGA--GTGTCTGC-T  1080

seq1  TGATAAAATTTGT-GTTTGTATAAAAAAAATATTGTCTCTATGGCTGGTA  1149
      ||||||    ||| ||||||| ||||||||| |||   || | ||||  |
seq2  TGATAA----TGTGGTTTGTA-AAAAAAAAT-TTG---CTCTTGCTG--A  1119

seq1  TGTTTTGGTTTTCTTCAATTTGTAGTTCATTGTAATCAC  1188
       ||||||   ||| |||   | |||||||||||||||||
seq2  AGTTTTG---TTCCTCA---TTTAGTTCATTGTAATCAC  1152