BAC Information

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BAC

Clone NameB6Ng01-169K06
Chromosome7 (Build37)
Map Location 52,238,731 - 52,396,095
singlet/doubletdoublet
Overlap genePrmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l
Upstream geneKlk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c
Downstream geneAldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169K06.bB6Ng01-169K06.g
ACCDH960564DH960565
length798429
definitionDH960564|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K06, 5' end.DH960565|Mus musculus domesticus DNA, BAC clone: B6Ng01-169K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,238,731 - 52,239,527)(52,395,661 - 52,396,095)
sequence
gaattcagtcttcaaaagtggaccaggggcagaaagggagcagtgaacgt
gctgagacactcagagccctgtctggtcttgtggtccttcagtccatact
ggctgtagggtcagtctctactcacctcgtggatgccaaagtgggcatag
gagtcaaagtagtagtctttggatgtcatgtcctcagcgttgggcttctc
actactttctgcttggccacaggaaacctagaagagggggagtggcaaag
ggtcaaaggtgggttccccagagtctcctcaacctgcaaaaagcccctca
tcataccaggacaaccctccagccccctccagcatctttcttccccaggt
catgtttccacttccaggacccacccagagcaccatccagggagcagccg
cctcgcctaccatctctccaggctctatggcctgtctctagctcagccca
cagctggggagggagggagagagggcagagccagggcagacacatggaag
ggcaggggaggagggctggagatggagttaaggaagcagccatggttctg
gggaagccagctggggccaggaagggctctgtcctaaggggttagggggc
acagcagaggaaactggttggaagcaagaggacggttagacctcttgggg
agccagatgtatagcaagtaagcttatgtggaagtggggctgggtggggg
tctcacaaaaggatatttacttcttcaagaggcggctggaggactatccc
attagccaagggtggcttcaaaattctggagagagtaacagggaaaaa
ttgtgatccacctgggattatatatgtatggacacgtccaccctgtgctc
ttccttagtctctgccaaatcctgtttaccatgtgaggtcataaaacaag
ccagagtgtctgttcacccaggctgagcatgaaggccccaggcaagagaa
gtcgagaagagccgtcagaatggcctagactttagcagtaaccctgatct
gtactggttgactcactgcacattgtcaaggcctccctccttccctctct
ctctctctctttccctctctctccccggtctgctcactaatgttgcccag
tgaactgggctaacagaggctgtcttagtccattttcttttctcgtatgt
tttggtttggtgttctatttgcttggtttggtttcaagaacgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52238731_52239527
seq2: B6Ng01-169K06.b_47_844

seq1  GAATTCAGTCTTCAAAAGTGGACCAGGGGCAGAAAGGGAGCAGTGAACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTTCAAAAGTGGACCAGGGGCAGAAAGGGAGCAGTGAACGT  50

seq1  GCTGAGACACTCAGAGCCCTGTCTGGTCTTGTGGTCCTTCAGTCCATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACACTCAGAGCCCTGTCTGGTCTTGTGGTCCTTCAGTCCATACT  100

seq1  GGCTGTAGGGTCAGTCTCTACTCACCTCGTGGATGCCAAAGTGGGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGGGTCAGTCTCTACTCACCTCGTGGATGCCAAAGTGGGCATAG  150

seq1  GAGTCAAAGTAGTAGTCTTTGGATGTCATGTCCTCAGCGTTGGGCTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAAGTAGTAGTCTTTGGATGTCATGTCCTCAGCGTTGGGCTTCTC  200

seq1  ACTACTTTCTGCTTGGCCACAGGAAACCTAGAAGAGGGGGAGTGGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTCTGCTTGGCCACAGGAAACCTAGAAGAGGGGGAGTGGCAAAG  250

seq1  GGTCAAAGGTGGGTTCCCCAGAGTCTCCTCAACCTGCAAAAAGCCCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGGTGGGTTCCCCAGAGTCTCCTCAACCTGCAAAAAGCCCCTCA  300

seq1  TCATACCAGGACAACCCTCCAGCCCCCTCCAGCATCTTTCTTCCCCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCAGGACAACCCTCCAGCCCCCTCCAGCATCTTTCTTCCCCAGGT  350

seq1  CATGTTTCCACTTCCAGGACCCACCCAGAGCACCATCCAGGGAGCAGCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCCACTTCCAGGACCCACCCAGAGCACCATCCAGGGAGCAGCCG  400

seq1  CCTCGCCTACCATCTCTCCAGGCTCTATGGCCTGTCTCTAGCTCAGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCCTACCATCTCTCCAGGCTCTATGGCCTGTCTCTAGCTCAGCCCA  450

seq1  CAGCTGGGGAGGGAGGGAGAGAGGGCAGAGCCAGGGCAGACACATGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGGAGGGAGGGAGAGAGGGCAGAGCCAGGGCAGACACATGGAAG  500

seq1  GGCAGGGGAGGAGGGCTGGAGATGGAGTTAAGGAAGCAGCCATGGTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGAGGAGGGCTGGAGATGGAGTTAAGGAAGCAGCCATGGTTCTG  550

seq1  GGGAAGCCAGCTGGGGCCAGGAAGGGCTCTGTCCTAAGGGGTTAGGGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCAGCTGGGGCCAGGAAGGGCTCTGTCCTAAGGGGTTAGGGGGC  600

seq1  ACAGCAGAGGAAACTGGTTGGAAGCAAGAGGACGGTTAGACCTCTTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAGGAAACTGGTTGGAAGCAAGAGGACGGTTAGACCTCTTGGGG  650

seq1  AGCCAGATGTATAGCAAGTAAGCTTATGTGGAAGT-GGGCTGGGTGGGGG  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGCCAGATGTATAGCAAGTAAGCTTATGTGGAAGTGGGGCTGGGTGGGGG  700

seq1  TCTCACAAAAGGATATTTACTTCTTCAAGAGGCGGCTGGAGGCTCATCCC  749
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TCTCACAAAAGGATATTTACTTCTTCAAGAGGCGGCTGGAGGACTATCCC  750

seq1  ATTAGCCAA-GGTGGCTACAAAATTCTAGGAGAGAGTAACAGGGAAAAA  797
      ||||||||| ||||||| ||||||||| |||||||||||||||||||||
seq2  ATTAGCCAAGGGTGGCTTCAAAATTCT-GGAGAGAGTAACAGGGAAAAA  798

seq1: chr7_52395661_52396095
seq2: B6Ng01-169K06.g_67_501 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACGTTCTTGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACGTTCTTGAAACC  50

seq1  AAACCAAGCAAATAGAACACCAAACCAAAACATACGAGAAAAGAAAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGCAAATAGAACACCAAACCAAAACATACGAGAAAAGAAAATGG  100

seq1  ACTAAGACAGCCTCTGTTAGCCCAGTTCACTGGGCAACATTAGTGAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGACAGCCTCTGTTAGCCCAGTTCACTGGGCAACATTAGTGAGCAG  150

seq1  ACCGGGGAGAGAGAGGGAAAGAGAGAGAGAGAGAGGGAAGGAGGGAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGGAGAGAGAGGGAAAGAGAGAGAGAGAGAGGGAAGGAGGGAGGCC  200

seq1  TTGACAATGTGCAGTGAGTCAACCAGTACAGATCAGGGTTACTGCTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAATGTGCAGTGAGTCAACCAGTACAGATCAGGGTTACTGCTAAAG  250

seq1  TCTAGGCCATTCTGACGGCTCTTCTCGACTTCTCTTGCCTGGGGCCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCCATTCTGACGGCTCTTCTCGACTTCTCTTGCCTGGGGCCTTCA  300

seq1  TGCTCAGCCTGGGTGAACAGACACTCTGGCTTGTTTTATGACCTCACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCTGGGTGAACAGACACTCTGGCTTGTTTTATGACCTCACATG  350

seq1  GTAAACAGGATTTGGCAGAGACTAAGGAAGAGCACAGGGTGGACGTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAGGATTTGGCAGAGACTAAGGAAGAGCACAGGGTGGACGTGTCC  400

seq1  ATACATATATAATCCCAGGTGGATCACAAGAATTC  435
      |||||||||||||||||||||||||||||||||||
seq2  ATACATATATAATCCCAGGTGGATCACAAGAATTC  435