BAC Information

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BAC

Clone NameB6Ng01-169M20
Chromosome7 (Build37)
Map Location 9,164,879 - 9,279,864
singlet/doubletdoublet
Overlap geneLOC100042039, LOC100042781
Upstream geneLOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909
Downstream geneLOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169M20.bB6Ng01-169M20.g
ACCDH960679DH960680
length1,186410
definitionDH960679|Mus musculus domesticus DNA, BAC clone: B6Ng01-169M20, 5' end.DH960680|Mus musculus domesticus DNA, BAC clone: B6Ng01-169M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,164,879 - 9,166,080)(9,279,450 - 9,279,864)
sequence
gaattctacgcacatttattcttttttatttatcttttaattagatattt
tcattatttgcatttcaaatgctatcccaaaagtcccctctacactcccc
ctgccctgctccccaacccacccactcctgcttcctgaccctggcattcc
cctctactagggaatataatcttcataagaccaagagcctctcctccaaa
tgatggtcgagtaggccatcttctgctaaatatgcagctaaagacatgag
ctctgcgggtactggatagttcatatcgttactcctatacggttgcagaa
accattagttccttgggtacattctctagctcctccattggaggctctat
gttccatccagtagatgacactgagcatccacttccggattagccacgca
ctgtcagagcctcacaagagacaggtatatcagggttctgtcagaaaccg
ttgctatcataggcaatagtgtcttataaaaatttataaaaacttactgt
cttatatgatatatataaatatttaatatagaaattatatcaatatatac
ttctataattatgtaattataatatatagaaaattataagatacaaataa
tataaatgtataatataaaatatatataaatataaagtcatatacaatat
atatataatatatataccaaagtcttatttacaatatatatatacattta
atataaaaataatatgaatatataattatataactataatatataacata
caacctatataaagtataataaagaaataatataaatatataatattaat
atataatgtaaatatataaatatatgtttatatatatataataaatagtg
tcttataaaaacgtaaaaaacactagaacttgtagtggagaatgtgggga
aaaaccccgaagatattttccaaaggaaaaattcctgacagacagcagtg
gcttgtgctgtaaatcaagaattgacaatgagacttcataaaattgggaa
agcttctgttaggcatagtatgttagtagaacaaaacagcaacaaacaga
tgggaaaaatttttgccatttctatattctgatggattatattcaataat
atataagaattcagaagcctgaactcgacagagcaatatatccattaatt
ggagtacagacaaccttaaacaaggatctgactgag
aaactcttctcagttatacacatcagatatgacgtcatcaccaataactt
ttctattgtgcatccccacactaaaagaaatttggagatgcataacagaa
ttcagcccacaaaatcatttcggagtggcactgaggatgtacttcagaag
gaaagtctccagcagcagcttccagaggggtggggtggggggaagggaac
actgagcatatgtaaatggatctagtctgtagggagtccgcttaactcct
tacacattggttctccactgtccatctctgcaactgtcctggtatccatg
gtgaagctgtttgaactatttttaactaaaatcttctgtgtgcttaaagg
caggaagaattgcaggaggtgttagtgcatacatataatcccaggggaag
tctgagtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9164879_9166080
seq2: B6Ng01-169M20.b_49_1234

seq1  GAATTCTACGCACATTTATTCTTTTTTATTTATCTTTTAATTAGATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACGCACATTTATTCTTTTTTATTTATCTTTTAATTAGATATTT  50

seq1  TCATTATTTGCATTTCAAATGCTATCCCAAAAGTCCCCTCTACACTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTTGCATTTCAAATGCTATCCCAAAAGTCCCCTCTACACTCCCC  100

seq1  CTGCCCTGCTCCCCAACCCACCCACTCCTGCTTCCTGACCCTGGCATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGCTCCCCAACCCACCCACTCCTGCTTCCTGACCCTGGCATTCC  150

seq1  CCTCTACTAGGGAATATAATCTTCATAAGACCAAGAGCCTCTCCTCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTAGGGAATATAATCTTCATAAGACCAAGAGCCTCTCCTCCAAA  200

seq1  TGATGGTCGAGTAGGCCATCTTCTGCTAAATATGCAGCTAAAGACATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTCGAGTAGGCCATCTTCTGCTAAATATGCAGCTAAAGACATGAG  250

seq1  CTCTGCGGGTACTGGATAGTTCATATCGTTACTCCTATACGGTTGCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCGGGTACTGGATAGTTCATATCGTTACTCCTATACGGTTGCAGAA  300

seq1  ACCATTAGTTCCTTGGGTACATTCTCTAGCTCCTCCATTGGAGGCTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAGTTCCTTGGGTACATTCTCTAGCTCCTCCATTGGAGGCTCTAT  350

seq1  GTTCCATCCAGTAGATGACACTGAGCATCCACTTCCGGATTAGCCACGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCCAGTAGATGACACTGAGCATCCACTTCCGGATTAGCCACGCA  400

seq1  CTGTCAGAGCCTCACAAGAGACAGGTATATCAGGGTTCTGTCAGAAACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGAGCCTCACAAGAGACAGGTATATCAGGGTTCTGTCAGAAACCG  450

seq1  TTGCTATCATAGGCAATAGTGTCTTATAAAAATTTATAAAAACTTACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATCATAGGCAATAGTGTCTTATAAAAATTTATAAAAACTTACTGT  500

seq1  CTTATATGATATATATAAATATTTAATATAGAAATTATATCAATATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATGATATATATAAATATTTAATATAGAAATTATATCAATATATAC  550

seq1  TTCTATAATTATGTAATTATAATATATAGAAAATTATAAGATACAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAATTATGTAATTATAATATATAGAAAATTATAAGATACAAATAA  600

seq1  TATAAATGTATAATATAAAATATATATAAATATAAAGTCATATACAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGTATAATATAAAATATATATAAATATAAAGTCATATACAATAT  650

seq1  ATATATAATATATATACCAAAGTCTTATTTACAATATATATATACATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAATATATATACCAAAGTCTTATTTACAATATATATATACATTTA  700

seq1  ATATAAAAATAATATGAATATATAATTATATAACTATAATATATAACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAATAATATGAATATATAATTATATAACTATAATATATAACATA  750

seq1  CAACCTATATAAAGTATAATAAAGAAATAATATAAATATATAATATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTATATAAAGTATAATAAAGAAATAATATAAATATATAATATTAAT  800

seq1  ATATAATGTAAATATATAAATATATGTTTATATATATATAATAAATAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGTAAATATATAAATATATGTTTATATATATATAATAAATAGTG  850

seq1  TCTTATAAAAACGTAAAAAACACTAGAACTTGTAGTGGAGAATGTGGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAAAAACGTAAAAAACACTAGAACTTGTAGTGGAGAATGTGGGGA  900

seq1  AAAACCCCGAAGATATTTTCCAAAGGAAAAATTCCTGAACAGAACAGCAG  950
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  AAAACCCCGAAGATATTTTCCAAAGGAAAAATTCCTG-ACAG-ACAGCAG  948

seq1  TGGCTTGTGCTGTAAAATCAAGAATTGACAAATGAGACCTCATAAAATT-  999
      ||||||||||||| ||||||||||||||| |||||||| |||||||||| 
seq2  TGGCTTGTGCTGT-AAATCAAGAATTGAC-AATGAGACTTCATAAAATTG  996

seq1  GGAAAGCTTCTGTTAGGCATAGTATGTTAGTAAGACAAAACAGCAACAAA  1049
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GGAAAGCTTCTGTTAGGCATAGTATGTTAGTAGAACAAAACAGCAACAAA  1046

seq1  CAGATTGGGAAAAGATCTTTGCCAATCCTATA-TCTGATAGGGGATTAAT  1098
      |||| |||||||| || ||||||| | ||||| ||||||   ||||| ||
seq2  CAGA-TGGGAAAA-ATTTTTGCCATTTCTATATTCTGAT---GGATT-AT  1090

seq1  ATCCAATATATATA-AAGAATTCAAGAAG-CTGTACTCCAGACA-AGCAA  1145
      || ||||| ||||| |||||||| ||||| ||| ||||  |||| ||| |
seq2  ATTCAATA-ATATATAAGAATTC-AGAAGCCTGAACTC--GACAGAGC-A  1135

seq1  ATAACCCCATTTAAAAATGGAGTACAGACAAAACTAAACAAAGAATTCTT  1195
      |||   |||||   || ||||||||||||||   ||||||| ||  || |
seq2  ATATATCCATT---AATTGGAGTACAGACAACCTTAAACAAGGA--TC-T  1179

seq1  GACTGAG  1202
      |||||||
seq2  GACTGAG  1186

seq1: chr7_9279450_9279864
seq2: B6Ng01-169M20.g_67_482 (reverse)

seq1  CAAACTCAGATATCCACTGGGATTATATGTATGCACTAACACCTCCTGCC  50
      ||||||||||  ||| ||||||||||||||||||||||||||||||||| 
seq2  CAAACTCAGACTTCCCCTGGGATTATATGTATGCACTAACACCTCCTGCA  50

seq1  ACTCTTCCTGCCTTTATGCACACAGTGGGTTCTGGTT-AATGTAGTTCAA  99
      | |||||||||||||| ||||||||  | || | ||| ||  ||||||||
seq2  ATTCTTCCTGCCTTTAAGCACACAGAAGATTTTAGTTAAAAATAGTTCAA  100

seq1  ACAGCTTCACCATGGATACCAGGACAGTTGCAGAGATGGACAGTGGAGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCACCATGGATACCAGGACAGTTGCAGAGATGGACAGTGGAGAA  150

seq1  CCAATGTGTAAGGAGTTAAGCGGACTCCCTACAGACTAGATCCATTTACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGTAAGGAGTTAAGCGGACTCCCTACAGACTAGATCCATTTACA  200

seq1  TATGCTCAGTGTTCCCTTCCCCCCACCCCACCCCTCTGGAAGCTGCTGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCAGTGTTCCCTTCCCCCCACCCCACCCCTCTGGAAGCTGCTGCT  250

seq1  GGAGACTTTCCTTCTGAAGTACATCCTCAGTGCCACTCCGAAATGATTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTTTCCTTCTGAAGTACATCCTCAGTGCCACTCCGAAATGATTTT  300

seq1  GTGGGCTGAATTCTGTTATGCATCTCCAAATTTCTTTTAGTGTGGGGATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTGAATTCTGTTATGCATCTCCAAATTTCTTTTAGTGTGGGGATG  350

seq1  CACAATAGAAAAGTTATTGGTGATGACGTCATATCTGATGTGTATAACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGAAAAGTTATTGGTGATGACGTCATATCTGATGTGTATAACTG  400

seq1  AGAAGAGTTTGAATTC  415
      ||||||||||||||||
seq2  AGAAGAGTTTGAATTC  416