BAC Information

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BAC

Clone NameB6Ng01-169O11
Chromosome7 (Build37)
Map Location 88,116,852 - 88,302,972
singlet/doubletdoublet
Overlap geneZfp592, Alpk3, Slc28a1
Upstream geneZfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a
Downstream geneEG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169O11.bB6Ng01-169O11.g
ACCDH960755DH960756
length9591,141
definitionDH960755|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O11, 5' end.DH960756|Mus musculus domesticus DNA, BAC clone: B6Ng01-169O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,116,852 - 88,117,814)(88,301,825 - 88,302,972)
sequence
gaattctgcctgtctctttagggaattaaagcatttaaatcagcagaagg
cttagctggcagagaatgctcaaaattttgagaatggaaaggattgtcat
gtcataagaatttctttaaaaatttaaattacatttatgcctctctgtct
ctctttctctctctttgttgcattatggtgcacatatgaaggttatttct
ctttatactgtgagtctctaggattgaactcccgtcctcaggtttggcag
catggcagtgagttgagacgccccactgggcactggtctactgaattcta
gccacagaatgtgtgggttactgattcagtacatgtaactccctggagga
tattaaacattactccagcttcacaaaactgtgtgccagacaggtggtgc
cgtaccttccaagtgctgccgaccatgatgacgtcttcttaacaacatca
gcctttacagttacaagagcctctctatgcattacttttgtaggtacagc
ctacatgtttttgtgtttttttttttttaatttatttatttatttattta
tttaatgtgagtacactgtagctgtctccagacaccccagaagagggcat
cagatcccattacagatggttgtgagccaccatgtggttgctgggatttg
aactcaggacctctggaagagcagtcagtgctcttaactgctcagccatc
tctccagctccttgtgttgcatttttattttcattcaggtttaaatactt
tcaggtgaaatggttgggtggttaaagtgcatgctagcaaacaacagggc
cagatccaggattcccagtacccacaaaatgctgaatgctgggtgagtgt
agctgtgggcttgtagttccagcgtctgaggtggagcgctaagagatccc
tgaaagcttgagaggatgagtagccatgtcagtgagctggggatgtgatt
gggagacat
gaattcttgctgtcttgcagaggacctgagttcagttccctgccccacat
caggcagcttgaggtagatgcccttctctggacatggtgacatatgcctt
tagtctcagcagaggcaggcaaatctctgtgagtttaagaccagcctaat
gtatagagtgaattccaggctattcagagctacacagtgaggcccctgcc
tcaagcgggagtagggagagaacgggaggtgaggttacatgggctcaggc
taataaaggcagagggcatctgttctcagggaacagacaggaatccatga
agctgaaggcctggagcttcaggccctgaaaccctccttctttgtctaaa
ccccacttgtttctccttactcagaagcagaaaccgcctagggtgtgaaa
atgaagtccctcacgaaggcttggtcctcagctgcctcagagcctggagg
gagctgcactcaccaatgagtcaatccatctccactgactgtgaggaaaa
cctggctgggagaagtaggtcactggggcatgcctgtacatcttacaccc
agactcttcttttctgtctctctgcgtccctgactgccctgaggtggact
gaggtggacagaaccattctaccacaccgcctctgcaatgatccatctca
acacaagcccacagagatggggcaaagtgggtggaaacctctaaaggcat
gatcataagtaaaatacatctccatttttcaactctctctggggcacttt
gtcctagtaacagaaagctcgcttgcacaccatgcgaacgaaccatcaag
aggcccaactcctcttccctgccaccagcactagatggcaagcccagcac
cctgatccctcctggaggagggcagtcggggtggtgccctcttggaactt
tcaggcttcagttgtctctccctggcagctcagcaccatcgtggacactg
ccacgcctgaaataggagttctcgtctgccagtctagaccctgactcttc
ttcagcttgaagagtacacccagcttgttaggcttggaatttaaggggaa
ccacattccagagcctattggctcaagtcctctaattccccagtgccgtt
ctgctcttgatggagatagcgagactttcgcatgcaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_88116852_88117814
seq2: B6Ng01-169O11.b_46_1004

seq1  GAATTCTGCCTGTCTCTTTAGGGAATTAAAGCATTTAAATCAGCAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGTCTCTTTAGGGAATTAAAGCATTTAAATCAGCAGAAGG  50

seq1  CTTAGCTGGCAGAGAATGCTCAAAATTTTGAGAATGGAAAGGATTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTGGCAGAGAATGCTCAAAATTTTGAGAATGGAAAGGATTGTCAT  100

seq1  GTCATAAGAATTTCTTTAAAAATTTAAATTACATTTATGCCTCTCTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAGAATTTCTTTAAAAATTTAAATTACATTTATGCCTCTCTGTCT  150

seq1  CTCTTTCTCTCTCTTTGTTGCATTATGGTGCACATATGAAGGTTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCTCTCTTTGTTGCATTATGGTGCACATATGAAGGTTATTTCT  200

seq1  CTTTATACTGTGAGTCTCTAGGATTGAACTCCCGTCCTCAGGTTTGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATACTGTGAGTCTCTAGGATTGAACTCCCGTCCTCAGGTTTGGCAG  250

seq1  CATGGCAGTGAGTTGAGACGCCCCACTGGGCACTGGTCTACTGAATTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGTGAGTTGAGACGCCCCACTGGGCACTGGTCTACTGAATTCTA  300

seq1  GCCACAGAATGTGTGGGTTACTGATTCAGTACATGTAACTCCCTGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAATGTGTGGGTTACTGATTCAGTACATGTAACTCCCTGGAGGA  350

seq1  TATTAAACATTACTCCAGCTTCACAAAACTGTGTGCCAGACAGGTGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACATTACTCCAGCTTCACAAAACTGTGTGCCAGACAGGTGGTGC  400

seq1  CGTACCTTCCAAGTGCTGCCGACCATGATGACGTCTTCTTAACAACATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCTTCCAAGTGCTGCCGACCATGATGACGTCTTCTTAACAACATCA  450

seq1  GCCTTTACAGTTACAAGAGCCTCTCTATGCATTACTTTTGTAGGTACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTACAGTTACAAGAGCCTCTCTATGCATTACTTTTGTAGGTACAGC  500

seq1  CTACATGTTTTTGTGTTTTTTTTTTTTTAATTTATTTATTTATTTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTTTTTGTGTTTTTTTTTTTTTAATTTATTTATTTATTTATTTA  550

seq1  TTTAATGTGAGTACACTGTAGCTGTCTCCAGACACCCCAGAAGAGGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTGAGTACACTGTAGCTGTCTCCAGACACCCCAGAAGAGGGCAT  600

seq1  CAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTG  650

seq1  AACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTCAGCCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACTGCTCAGCCATC  700

seq1  TCTCCAGCTCCTTGTGTTGCATTTTTATTTTCATTCAGGTTTAAATACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGCTCCTTGTGTTGCATTTTTATTTTCATTCAGGTTTAAATACTT  750

seq1  TCAGGTGAAATGGTTGGGTGGTTAAAGTGCATGCTAGGCAAACAACAGGG  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAGGTGAAATGGTTGGGTGGTTAAAGTGCATGCTA-GCAAACAACAGGG  799

seq1  CCAGATCCAGGATTCCCAGTACCCACAAAATGCTGAATGCTGGGTGAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCCAGGATTCCCAGTACCCACAAAATGCTGAATGCTGGGTGAGTG  849

seq1  TAGCTGTGGGCTTGTAGTTCCAGCGTCTGAGGTGGAGCGCTAAGGAGATC  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  TAGCTGTGGGCTTGTAGTTCCAGCGTCTGAGGTGGAGCGCTAA-GAGAT-  897

seq1  CCCTGAACAGCTTGAGAGTATGAGTAGCCATGTCAGTGAGCTGGGGATGT  950
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  CCCTGAA-AGCTTGAGAGGATGAGTAGCCATGTCAGTGAGCTGGGGATGT  946

seq1  GATTGGGAGACAT  963
      |||||||||||||
seq2  GATTGGGAGACAT  959

seq1: chr7_88301825_88302972
seq2: B6Ng01-169O11.g_70_1210 (reverse)

seq1  CTGCCTGCATGCAGAAGTCCTGC-ATCTCCATCAAGAGCAGGAACGGCCA  49
      ||||||||||||  |||||  || |||||||||||||||| |||||| ||
seq2  CTGCCTGCATGCGAAAGTCTCGCTATCTCCATCAAGAGCA-GAACGG-CA  48

seq1  CTGTGGGATTTGAGG-CTGTGGCCATATGGCTCTGGAATGTGTGTCCCCC  98
      ||| || ||| |||| ||   ||||   |||||||||||||| || ||||
seq2  CTGGGGAATTAGAGGACTTGAGCCAATAGGCTCTGGAATGTG-GTTCCCC  97

seq1  CTAAAATCCAAG-CTTACAAGCTGGGTGTACTCTTCAAGCTGAAGGAAGA  147
       |||| |||||| || |||||||||||||||||||||||||||| |||||
seq2  TTAAATTCCAAGCCTAACAAGCTGGGTGTACTCTTCAAGCTGAA-GAAGA  146

seq1  GGTCAGGGTCTAGACTGGCAGACGGAGAAACCTCCTATTTCAGGCGTGGC  197
       |||||||||||||||||||||| |||||  |||||||||||||||||||
seq2  -GTCAGGGTCTAGACTGGCAGAC-GAGAA--CTCCTATTTCAGGCGTGGC  192

seq1  AGTGTCCACGATGGTGCTGAGCTGCCAGGGAGGAGACAACTGAAGCCCTG  247
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  AGTGTCCACGATGGTGCTGAGCTGCCAGGGA-GAGACAACTGAAG-CCTG  240

seq1  AAAGTTCCAAGAGGGCACCACCCCGACTGCCCTCCTCCAGGAGGGATCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCAAGAGGGCACCACCCCGACTGCCCTCCTCCAGGAGGGATCAG  290

seq1  GGTGCTGGGCTTGCCATCTAGTGCTGGTGGCAGGGAAGAGGAGTTGGGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGGCTTGCCATCTAGTGCTGGTGGCAGGGAAGAGGAGTTGGGCC  340

seq1  TCTTGATGGTTCGTTCGCATGGTGTGCAAGCGAGCTTTCTGTTACTAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGGTTCGTTCGCATGGTGTGCAAGCGAGCTTTCTGTTACTAGGA  390

seq1  CAAAGTGCCCCAGAGAGAGTTGAAAAATGGAGATGTATTTTACTTATGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGCCCCAGAGAGAGTTGAAAAATGGAGATGTATTTTACTTATGAT  440

seq1  CATGCCTTTAGAGGTTTCCACCCACTTTGCCCCATCTCTGTGGGCTTGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTTAGAGGTTTCCACCCACTTTGCCCCATCTCTGTGGGCTTGTG  490

seq1  TTGAGATGGATCATTGCAGAGGCGGTGTGGTAGAATGGTTCTGTCCACCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGGATCATTGCAGAGGCGGTGTGGTAGAATGGTTCTGTCCACCT  540

seq1  CAGTCCACCTCAGGGCAGTCAGGGACGCAGAGAGACAGAAAAGAAGAGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACCTCAGGGCAGTCAGGGACGCAGAGAGACAGAAAAGAAGAGTC  590

seq1  TGGGTGTAAGATGTACAGGCATGCCCCAGTGACCTACTTCTCCCAGCCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTAAGATGTACAGGCATGCCCCAGTGACCTACTTCTCCCAGCCAG  640

seq1  GTTTTCCTCACAGTCAGTGGAGATGGATTGACTCATTGGTGAGTGCAGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTCACAGTCAGTGGAGATGGATTGACTCATTGGTGAGTGCAGCT  690

seq1  CCCTCCAGGCTCTGAGGCAGCTGAGGACCAAGCCTTCGTGAGGGACTTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGGCTCTGAGGCAGCTGAGGACCAAGCCTTCGTGAGGGACTTCA  740

seq1  TTTTCACACCCTAGGCGGTTTCTGCTTCTGAGTAAGGAGAAACAAGTGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACACCCTAGGCGGTTTCTGCTTCTGAGTAAGGAGAAACAAGTGGG  790

seq1  GTTTAGACAAAGAAGGAGGGTTTCAGGGCCTGAAGCTCCAGGCCTTCAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGACAAAGAAGGAGGGTTTCAGGGCCTGAAGCTCCAGGCCTTCAGC  840

seq1  TTCATGGATTCCTGTCTGTTCCCTGAGAACAGATGCCCTCTGCCTTTATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGATTCCTGTCTGTTCCCTGAGAACAGATGCCCTCTGCCTTTATT  890

seq1  AGCCTGAGCCCATGTAACCTCACCTCCCGTTCTCTCCCTACTCCCGCTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGCCCATGTAACCTCACCTCCCGTTCTCTCCCTACTCCCGCTTG  940

seq1  AGGCAGGGGCCTCACTGTGTAGCTCTGAATAGCCTGGAATTCACTCTATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGGCCTCACTGTGTAGCTCTGAATAGCCTGGAATTCACTCTATA  990

seq1  CATTAGGCTGGTCTTAAACTCACAGAGATTTGCCTGCCTCTGCTGAGACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCTGGTCTTAAACTCACAGAGATTTGCCTGCCTCTGCTGAGACT  1040

seq1  AAAGGCATATGTCACCATGTCCAGAGAAGGGCATCTACCTCAAGCTGCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATATGTCACCATGTCCAGAGAAGGGCATCTACCTCAAGCTGCCT  1090

seq1  GATGTGGGGCAGGGAACTGAACTCAGGTCCTCTGCAAGACAGCAAGAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGGGCAGGGAACTGAACTCAGGTCCTCTGCAAGACAGCAAGAATT  1140

seq1  C  1148
      |
seq2  C  1141