BAC Information

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BAC

Clone NameB6Ng01-170B05
Chromosome7 (Build37)
Map Location 114,070,942 - 114,254,008
singlet/doubletdoublet
Overlap geneOlfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17
Upstream geneLOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139, Gm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708
Downstream geneOlfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170B05.bB6Ng01-170B05.g
ACCDH960881DH960882
length308620
definitionDH960881|Mus musculus domesticus DNA, BAC clone: B6Ng01-170B05, 5' end.DH960882|Mus musculus domesticus DNA, BAC clone: B6Ng01-170B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,070,942 - 114,071,249)(114,253,387 - 114,254,008)
sequence
tgtcacagaggttctgttgtcttcacccatgaatggctgtttgtctctgt
agaagagcatcaaggaaagaaacacacacatcaattgtttcaggacatct
gaatgacttaggtatttaatcatactccccaacatcaaactatgtattta
agtctgagttttaatttgtttagtagcttgacaattggaagtctgtttga
acccttctctccttacatcttctaataggttaaaaaaaaaaaaaaaagaa
tccttctcccaggaccagaaatgggatgggtggtttgggaagcaggggga
gggggaat
gaattcccctgagtactctaaactgccccagagacagttcataacacctc
cactactcactccattcaccacatttaaaaggagctactatatgacctta
catacagtaggagggtgtgagataagtgaggatcctcattcccgccctgt
cttgctcttagtttacaactttgactgagctctctacttttatgacaaga
tgcctactccctgcttggtcaatgctataggcaatgccattctagggttt
tctctgtcaagagggaaatgtgctcaatagttctgaaatgttaatgtaat
ctttattttttcttctaaaagagaaaaaaattggcaagattggcaaagaa
gagaaggtctgacatgaactaaggaaatgggtcagattgaaaataaattg
catttatctatatttgatttgtaggatttacttatcttctggcatagatc
tagccaagttttttctacaatagctatctattctatcaaataatggttac
agtattatgttcccagtgaagaagaatcttgtttttcatgttatgaagtt
gtaggcagaccttccacagaatcaggtttggttctctgtgtgtgtgagtg
tgtgtgtgtgtgtgtgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_114070942_114071249
seq2: B6Ng01-170B05.b_52_359

seq1  TGTCACAGAGGTTCTGTTGTCTTCACCCATGAATGGCTGTTTGTCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGAGGTTCTGTTGTCTTCACCCATGAATGGCTGTTTGTCTCTGT  50

seq1  AGAAGAGCATCAAGGAAAGAAACACACACATCAATTGTTTCAGGACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCATCAAGGAAAGAAACACACACATCAATTGTTTCAGGACATCT  100

seq1  GAATGACTTAGGTATTTAATCATACTCCCCAACATCAAACTATGTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTTAGGTATTTAATCATACTCCCCAACATCAAACTATGTATTTA  150

seq1  AGTCTGAGTTTTAATTTGTTTAGTAGCTTGACAATTGGAAGTCTGTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGTTTTAATTTGTTTAGTAGCTTGACAATTGGAAGTCTGTTTGA  200

seq1  ACCCTTCTCTCCTTACATCTTCTAATAGGTTAAAAAAAAAAAAAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTCTCCTTACATCTTCTAATAGGTTAAAAAAAAAAAAAAAAGAA  250

seq1  TCCTTCTCCCAGGACCAGAAATGGGATGGGTGGTTTGGGAAGCAGGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCCAGGACCAGAAATGGGATGGGTGGTTTGGGAAGCAGGGGGA  300

seq1  GGGGGAAT  308
      ||||||||
seq2  GGGGGAAT  308

seq1: chr7_114253387_114254008
seq2: B6Ng01-170B05.g_70_689 (reverse)

seq1  CACTCACACACACACACACACACACTCACACACACAGAGAACCAAACCTG  50
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACT--CACACACACACACACACACTCACACACACAGAGAACCAAACCTG  48

seq1  ATTCTGTGGAAGGTCTGCCTACAACTTCATAACATGAAAAACAAGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGGAAGGTCTGCCTACAACTTCATAACATGAAAAACAAGATTCT  98

seq1  TCTTCACTGGGAACATAATACTGTAACCATTATTTGATAGAATAGATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTGGGAACATAATACTGTAACCATTATTTGATAGAATAGATAGC  148

seq1  TATTGTAGAAAAAACTTGGCTAGATCTATGCCAGAAGATAAGTAAATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGAAAAAACTTGGCTAGATCTATGCCAGAAGATAAGTAAATCCT  198

seq1  ACAAATCAAATATAGATAAATGCAATTTATTTTCAATCTGACCCATTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCAAATATAGATAAATGCAATTTATTTTCAATCTGACCCATTTCC  248

seq1  TTAGTTCATGTCAGACCTTCTCTTCTTTGCCAATCTTGCCAATTTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCATGTCAGACCTTCTCTTCTTTGCCAATCTTGCCAATTTTTTTC  298

seq1  TCTTTTAGAAGAAAAAATAAAGATTACATTAACATTTCAGAACTATTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGAAGAAAAAATAAAGATTACATTAACATTTCAGAACTATTGAG  348

seq1  CACATTTCCCTCTTGACAGAGAAAACCCTAGAATGGCATTGCCTATAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCCCTCTTGACAGAGAAAACCCTAGAATGGCATTGCCTATAGCA  398

seq1  TTGACCAAGCAGGGAGTAGGCATCTTGTCATAAAAGTAGAGAGCTCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAAGCAGGGAGTAGGCATCTTGTCATAAAAGTAGAGAGCTCAGTC  448

seq1  AAAGTTGTAAACTAAGAGCAAGACAGGGCGGGAATGAGGATCCTCACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTAAACTAAGAGCAAGACAGGGCGGGAATGAGGATCCTCACTTA  498

seq1  TCTCACACCCTCCTACTGTATGTAAGGTCATATAGTAGCTCCTTTTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACCCTCCTACTGTATGTAAGGTCATATAGTAGCTCCTTTTAAAT  548

seq1  GTGGTGAATGGAGTGAGTAGTGGAGGTGTTATGAACTGTCTCTGGGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAATGGAGTGAGTAGTGGAGGTGTTATGAACTGTCTCTGGGGCAG  598

seq1  TTTAGAGTACTCAGGGGAATTC  622
      ||||||||||||||||||||||
seq2  TTTAGAGTACTCAGGGGAATTC  620