BAC Information

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BAC

Clone NameB6Ng01-170H08
Chromosome7 (Build37)
Map Location 126,998,337 - 127,149,501
singlet/doubletdoublet
Overlap geneDcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3
Upstream gene2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik
Downstream geneTmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170H08.bB6Ng01-170H08.g
ACCDH961165DH961166
length1,1321,126
definitionDH961165|Mus musculus domesticus DNA, BAC clone: B6Ng01-170H08, 5' end.DH961166|Mus musculus domesticus DNA, BAC clone: B6Ng01-170H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,148,372 - 127,149,501)(126,998,337 - 126,999,474)
sequence
gaattctcttcttgccctggtggttggttatgtgacagtcggggagccac
cactcactgctgtagccctgcatcctgagagggcatcacaaggctaaccc
aggaaaggatcaaagcatgtaaattttgaaacagcactcaaaggcagcca
acaattgcaccggcctctccagccattgaggtgggtcaagctctttgtct
ccacggtctcacaaagctttctcctctcaggttgaggacatgttcacgtg
gcttgtgcagccctgtctggactttagtcggctccattgcaaatttgtgg
tgcaaacatctcccatccaccttgccttctcaatgatgcggctgtactcc
tccctgctgggtaagtgacccatgattcttagtctacactgggtttgtct
tggctcatgatttcactctcattcctctttccttcctcttgagttactgt
gggacctgatgtctatccaaagcaagagtgctttgcaggtggaggttatg
gagagaaccatgtgttttgtctcatgttggtttgtgattgcacaaagttt
accgcatccttccttctcccacctaacgttcctcgtccacacagaggatt
ctcgagcctctcctccacacagagatttagatgacacatttggatgttcc
tctgaaaatctacttggaaaaatagataagttttcatttattaagaaagt
tatgggggctgcggagatagcttactcaatgctaactcaaaaaatgctca
ccacaatagcatggagtttgactcccagaaactacataaaaagatcaggt
gtggtggtacatgtttgttatcccagcacagatggatccctttgggtctc
actggccagtcagactagcaaagtcagcaccttcaaggactatgagagac
cctaccttaaaacaagtggagcacccttggcgggccgcagacagccggcc
cgtcgaacagaggacaggtgtctgcctggcttggaagcgcctcagcttcg
ggactccacggacttaggaaatagtctgacagtttaaggtgcgtccagag
aaactgaaagctttctgggacagcaaaacacagagccgctgagtcagcac
cttgcgggccgaactaccgaccaccgtcggac
gaattccaaaatggcaccctgatatcaccccttcccaaatcacctgaagc
cacaaagctagctaacctgaggagcaatttggctcccagccactgctcat
ccacccaataagcagcaagcctatctgagggtgagtgaaacagaaacttt
tgtttcccagaagtgttaactgcaaaccttacacctcactgagaatctct
tggcaaagcaaagcaactacacagaaaacccaaagtccctccctgaatac
tgttcctttctctggtttctcaacaacagatgattaaaaatataatcaca
atttctaaatggctggggttggggtgcaggcattgggattggagaaactg
agcagttaaaaaaacctctacccaatgaggaaaagatctagttccttgag
tccatggggcccttggcaaactccctcttggcactttccccacatacacc
ctttcttatctgggacagaaagtcttacctaactccacctcttccctcat
tagatttctacctaatcctgaattaggaacaactaactggctagatgaga
tcttaaccaaatgttataatgtagctgtgccctcagaaactactgggctc
ctggattcttactcaaggatttcatcttattctggctagaaaaaaaaggg
gtacatctggcccaacagccacttgggccttccagcactatcgtaagtct
gtggctgatattcatcatctcatccctcaaggaaggacaattgtgaggct
tacaaaaatgttccctgtgtcaataccgactttaagaaatatgactgtca
tctccttaaataatcatttttataaagataagtgcctagagctataagac
tcatgaagaactcaaagcatgcaattcttacccaggttgagaaacatgta
cccaggatttggggtagactaatcaagggaggaaattccaatatttaata
gacactttttcattgtatcagagtataaatattttttgtaacttttattt
attaaaagatccctttaaatctgttccgaaatgttgaagctgaactgtac
agctcctggccacccactttccagtacattttgagatattttttaaaggc
attatcagatgtacttagtgaataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_127148372_127149501
seq2: B6Ng01-170H08.b_63_1174 (reverse)

seq1  GTCCGGACGGTGGTCGGCTGTCTGCGGCCCGCCAAGGGTGCTGCCTCAGC  50
      |||| ||||||||||||  |  | ||||||||  | ||||||| ||||||
seq2  GTCC-GACGGTGGTCGGTAG--TTCGGCCCGC--AAGGTGCTGACTCAGC  45

seq1  GGCTCTGTGCTTCTGCCTGTCCCAG-AAGCTGTCCGGTTCTCTGG-CGCA  98
      ||||||||| || || ||||||||| ||||| || | |||||||| ||||
seq2  GGCTCTGTG-TTTTG-CTGTCCCAGAAAGCTTTCAGTTTCTCTGGACGCA  93

seq1  CCCTCTAACCTGTTCAGACTAATTTCCTAAGTCCCGTGGAGTCCCGGAGG  148
      ||   ||| ||| ||||||| ||||||||||| |||||||||||| || |
seq2  CC--TTAAACTG-TCAGACT-ATTTCCTAAGT-CCGTGGAGTCCC-GAAG  137

seq1  CTGAGGCCGCCTCCCAAGCCAGGCAGACACCTGTCCTCTGGTCCGGACGG  198
      |||||||   || ||||||||||||||||||||||||||| ||  |||| 
seq2  CTGAGGC--GCTTCCAAGCCAGGCAGACACCTGTCCTCTGTTC--GACG-  182

seq1  TGGCCGGCTGTCTGCGGCCCGCCAAGGGTGCTCCACCTTGTTTTTAAGGT  248
       |||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  -GGCCGGCTGTCTGCGGCCCGCCAAGGGTGCTCCA-CTTG-TTTTAAGGT  229

seq1  AGGGTCTCTCATAGTCCTTGAAGGTGCTGACTTTGCTAGTCTGACTGGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCTCATAGTCCTTGAAGGTGCTGACTTTGCTAGTCTGACTGGCC  279

seq1  AGTGAGACCC-AAGGGATCCATCTGTGCTGGGATAACAAACATGTACCAC  347
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACCCAAAGGGATCCATCTGTGCTGGGATAACAAACATGTACCAC  329

seq1  CACACCTGATCTTTTTATGTAGTTTCTGGGAGTCAAACTCCATGCTATTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTGATCTTTTTATGTAGTTTCTGGGAGTCAAACTCCATGCTATTG  379

seq1  TGGTGAGCATTTTTTGAGTTAGCATTGAGTAAGCTATCTCCGCAGCCCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCATTTTTTGAGTTAGCATTGAGTAAGCTATCTCCGCAGCCCCC  429

seq1  ATAACTTTCTTAATAAATGAAAACTTATCTATTTTTCCAAGTAGATTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTCTTAATAAATGAAAACTTATCTATTTTTCCAAGTAGATTTTC  479

seq1  AGAGGAACATCCAAATGTGTCATCTAAATCTCTGTGTGGAGGAGAGGCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACATCCAAATGTGTCATCTAAATCTCTGTGTGGAGGAGAGGCTC  529

seq1  GAGAATCCTCTGTGTGGACGAGGAACGTTAGGTGGGAGAAGGAAGGATGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCTCTGTGTGGACGAGGAACGTTAGGTGGGAGAAGGAAGGATGC  579

seq1  GGTAAACTTTGTGCAATCACAAACCAACATGAGACAAAACACATGGTTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACTTTGTGCAATCACAAACCAACATGAGACAAAACACATGGTTCT  629

seq1  CTCCATAACCTCCACCTGCAAAGCACTCTTGCTTTGGATAGACATCAGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAACCTCCACCTGCAAAGCACTCTTGCTTTGGATAGACATCAGGT  679

seq1  CCCACAGTAACTCAAGAGGAAGGAAAGAGGAATGAGAGTGAAATCATGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTAACTCAAGAGGAAGGAAAGAGGAATGAGAGTGAAATCATGAG  729

seq1  CCAAGACAAACCCAGTGTAGACTAAGAATCATGGGTCACTTACCCAGCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAAACCCAGTGTAGACTAAGAATCATGGGTCACTTACCCAGCAG  779

seq1  GGAGGAGTACAGCCGCATCATTGAGAAGGCAAGGTGGATGGGAGATGTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTACAGCCGCATCATTGAGAAGGCAAGGTGGATGGGAGATGTTT  829

seq1  GCACCACAAATTTGCAATGGAGCCGACTAAAGTCCAGACAGGGCTGCACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACAAATTTGCAATGGAGCCGACTAAAGTCCAGACAGGGCTGCACA  879

seq1  AGCCACGTGAACATGTCCTCAACCTGAGAGGAGAAAGCTTTGTGAGACCG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACGTGAACATGTCCTCAACCTGAGAGGAGAAAGCTTTGTGAGACCG  929

seq1  TGGAGACAAAGAGCTTGACCCACCTCAATGGCTGGAGAGGCCGGTGCAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAAAGAGCTTGACCCACCTCAATGGCTGGAGAGGCCGGTGCAAT  979

seq1  TGTTGGCTGCCTTTGAGTGCTGTTTCAAAATTTACATGCTTTGATCCTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTGCCTTTGAGTGCTGTTTCAAAATTTACATGCTTTGATCCTTT  1029

seq1  CCTGGGTTAGCCTTGTGATGCCCTCTCAGGATGCAGGGCTACAGCAGTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTAGCCTTGTGATGCCCTCTCAGGATGCAGGGCTACAGCAGTGA  1079

seq1  GTGGTGGCTCCCCGACTGTCACATAACCAACCA  1130
      |||||||||||||||||||||||||||||||||
seq2  GTGGTGGCTCCCCGACTGTCACATAACCAACCA  1112

seq1: chr7_126998337_126999474
seq2: B6Ng01-170H08.g_66_1191

seq1  GAATTCCAAAATGGCACCCTGATATCACCCCTTCCCAAATCACCTGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATGGCACCCTGATATCACCCCTTCCCAAATCACCTGAAGC  50

seq1  CACAAAGCTAGCTAACCTGAGGAGCAATTTGGCTCCCAGCCACTGCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCTAGCTAACCTGAGGAGCAATTTGGCTCCCAGCCACTGCTCAT  100

seq1  CCACCCAATAAGCAGCAAGCCTATCTGAGGGTGAGTGAAACAGAAACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAATAAGCAGCAAGCCTATCTGAGGGTGAGTGAAACAGAAACTTT  150

seq1  TGTTTCCCAGAAGTGTTAACTGCAAACCTTACACCTCACTGAGAATCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCCAGAAGTGTTAACTGCAAACCTTACACCTCACTGAGAATCTCT  200

seq1  TGGCAAAGCAAAGCAACTACACAGAAAACCCAAAGTCCCTCCCTGAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGCAAAGCAACTACACAGAAAACCCAAAGTCCCTCCCTGAATAC  250

seq1  TGTTCCTTTCTCTGGTTTCTCAACAACAGATGATTAAAAATATAATCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTTCTCTGGTTTCTCAACAACAGATGATTAAAAATATAATCACA  300

seq1  ATTTCTAAATGGCTGGGGTTGGGGTGCAGGCATTGGGATTGGAGAAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAATGGCTGGGGTTGGGGTGCAGGCATTGGGATTGGAGAAACTG  350

seq1  AGCAGTTAAAAAAACCTCTACCCAATGAGGAAAAGATCTAGTTCCTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAAAAAAACCTCTACCCAATGAGGAAAAGATCTAGTTCCTTGAG  400

seq1  TCCATGGGGCCCTTGGCAAACTCCCTCTTGGCACTTTCCCCACATACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGGGCCCTTGGCAAACTCCCTCTTGGCACTTTCCCCACATACACC  450

seq1  CTTTCTTATCTGGGACAGAAAGTCTTACCTAACTCCACCTCTTCCCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTATCTGGGACAGAAAGTCTTACCTAACTCCACCTCTTCCCTCAT  500

seq1  TAGATTTCTACCTAATCCTGAATTAGGAACAACTAACTGGCTAGATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCTACCTAATCCTGAATTAGGAACAACTAACTGGCTAGATGAGA  550

seq1  TCTTAACCAAATGTTATAATGTAGCTGTGCCCTCAGAAACTACTGGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCAAATGTTATAATGTAGCTGTGCCCTCAGAAACTACTGGGCTC  600

seq1  CTGGATTCTTACTCAAGGATTTCATCTTATTCTGGCTAGAAAAAAAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTCTTACTCAAGGATTTCATCTTATTCTGGCTAGAAAAAAAAGGG  650

seq1  GTACATCTGGCCCAACAGCCACTTGGGCCTTCCAGCACTATCGTAAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTGGCCCAACAGCCACTTGGGCCTTCCAGCACTATCGTAAGTCT  700

seq1  GTGGCTGATATTCATCATCTCATCCCTCAAGGAAGGACAATTGTGAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGATATTCATCATCTCATCCCTCAAGGAAGGACAATTGTGAGGCT  750

seq1  TACAAAAATGTTCCCTGTGTCAATACCGACTTTAAGAAATATGACTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAATGTTCCCTGTGTCAATACCGACTTTAAGAAATATGACTGTCA  800

seq1  TCTCCTTAAATAATCATTTTTATAAAGATAAGTGCCTAGAGCTATAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAAATAATCATTTTTATAAAGATAAGTGCCTAGAGCTATAAGAC  850

seq1  TCATGAAGAACTCAAAGCATGCAATTCTTACCCAGGTTGAGAAACATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAGAACTCAAAGCATGCAATTCTTACCCAGGTTGAGAAACATGTA  900

seq1  CCCAGGATTTGGGGTAGACTAATCAAGGGAGGAAATTCCAAATATTTAAT  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCAGGATTTGGGGTAGACTAATCAAGGGAGGAAATTCC-AATATTTAAT  949

seq1  AGACACTTTTTCATTGTATCAAGAGTATAAATA-TTTTTGTAACTTTTAT  999
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  AGACACTTTTTCATTGTATC-AGAGTATAAATATTTTTTGTAACTTTTAT  998

seq1  TTATTAAAAGATTCCCTTTTAAATCTGTTCCGAAATGTTGGAAGCTGAAC  1049
      ||||||||||||  || |||||||||||||||||||||| ||||||||||
seq2  TTATTAAAAGAT--CCCTTTAAATCTGTTCCGAAATGTT-GAAGCTGAAC  1045

seq1  TGTACAAGCTCCT-GCCACCCACTTTCCAGTACATTTTTGAGAATATTTT  1098
      ||||| ||||||| |||||||||||||||||||| ||||||| |||||||
seq2  TGTAC-AGCTCCTGGCCACCCACTTTCCAGTACA-TTTTGAG-ATATTTT  1092

seq1  TTAAGGGGAAATTATCAAGATGGTACTTTAGTGGAATAAG  1138
      |||| ||   |||||| |||| |||| ||||| |||||||
seq2  TTAAAGG--CATTATC-AGAT-GTAC-TTAGT-GAATAAG  1126