BAC Information

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BAC

Clone NameB6Ng01-170L02
Chromosome7 (Build37)
Map Location 123,302,649 - 123,502,304
singlet/doubletdoublet
Overlap genePlekha7, Rps13, Pik3c2a
Upstream geneLOC668472, Sox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik
Downstream geneLOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170L02.bB6Ng01-170L02.g
ACCDH961341DH961342
length9091,078
definitionDH961341|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L02, 5' end.DH961342|Mus musculus domesticus DNA, BAC clone: B6Ng01-170L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,302,649 - 123,303,556)(123,501,231 - 123,502,304)
sequence
gaattctacatacactggacatgactgcaggaggcttactgactgctctg
agcctcagtttccctacctgtatgtgaggtagtattagtgcttcatctag
ggttctgagtaagggaaaatacatcctgagagccttagcatgttatgcac
cttcctgacacggcttcccctccctccatggacaggcgtggtggtacaca
ccacctataaaagcaataaggaggtagaagttggagggtaagaagttcag
gatcaggctggagagatggctcagcggttaagagcaccaactgctcttcc
agaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatc
tgtaacaggatctgatgccctcttctggtgtgtctgaagtcagtgacagt
ggactcatatgcattaaataagtaaatcaatctttaaataaaggaagttc
aggggcgtcctcagccgtgcaataagttctgggccattctaggatacagg
aaacattgtcaaagactaggggttgaagagatggctcagcagtcagagat
ttgctgcttttccagagggcccaggttcaatccccagcagccacaaaagg
ttcataacaacctgtaactccagttccaggagatctatctccctcttctg
aattccatgggcatcaggcatgcacagcaatgcacagacatacactcagg
caaaacattcagaacataaattcaaacttttttttacagtttacggccag
tgagatggcttagtacatagagtgcttgccaagcagcttgataatctgaa
ctaaatccccagaaccaacggtggcaggagagaatggacttccaaaaagt
gttcctcttaatgctgtatgttgcattgcagcatccatgtgccctgctca
agtggtgtg
gaattcataatttacttttatgctagtgttaacgtttctaatgtttagtg
ttgtgtttgcagtcatgttcgttcttcagttctaatgctatgcctctgaa
agtcacaatggtgaatgctgaccctctgggggaagaaattaatgtcatgt
ttaaggtgagagggctagagttattctttgttttttgtctcttggggttt
gtgggggcgaggtgcatttggtttggttttgagacggggtctctatataa
ccctggctatcctagaacttgctatgtagaccagactggaattgaactta
agcagctatctccccatttccacctcctgagcgctgggattaaaggtgtg
tgccaccatactaggcttcttgttttttgttttgtttttttaatgataat
tcctctgtattgcctggctgaaggcctagacttaagggattcttctcctg
gttgaacttctcaaatacctatactatacaatggatttgcaccatgtgtt
caactaggtcactgagggaaaaatggcagcttaaaaattcttttaaccaa
atttattaaacatttatttgaaattgaagttgaatcagtaaaatttaagg
tggtaacatacacttgtaatgcaatgctcaagaaagcgtaggaaaggagg
actgcaagttgtaggctgatcttgacatgagactctgtctcaaaaaaaaa
aaaaaaaaaaagtgagtagttctgtaaaaatattactgacatacactcag
tcttctcagataaggactgggggacaactttagtcctaggccaatctgat
tatagcaggcaggcaccattaggttggccaagctgcaaaaacaggagtga
ccttacctaggggaatgtttgtgtgaaaccatatcctctcagtatagtca
tggtgtgcttttgaaccctgggatcatcctgctagagctccccatgtgct
gatattgtagggtatgctatctatatcggcctttggttttgaaatcagaa
taattctatgtgtagccaaaggactggattattaagaagaatttatttac
cctgttagatttctgagtttattcataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_123302649_123303556
seq2: B6Ng01-170L02.b_45_953

seq1  GAATTCTACATACACTGGACATGACTGCAGGAGGCTTACTGACTGCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATACACTGGACATGACTGCAGGAGGCTTACTGACTGCTCTG  50

seq1  AGCCTCAGTTTCCCTACCTGTATGTGAGGTAGTATTAGTGCTTCATCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGTTTCCCTACCTGTATGTGAGGTAGTATTAGTGCTTCATCTAG  100

seq1  GGTTCTGAGTAAGGGAAAATACATCCTGAGAGCCTTAGCATGTTATGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGAGTAAGGGAAAATACATCCTGAGAGCCTTAGCATGTTATGCAC  150

seq1  CTTCCTGACACGGCTTCCCCTCCCTCCATGGACAGGCGTGGTGGTACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGACACGGCTTCCCCTCCCTCCATGGACAGGCGTGGTGGTACACA  200

seq1  CCACCTATAAAAGCAATAAGGAGGTAGAAGTTGGAGGGTAAGAAGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTATAAAAGCAATAAGGAGGTAGAAGTTGGAGGGTAAGAAGTTCAG  250

seq1  GATCAGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCAACTGCTCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCAACTGCTCTTCC  300

seq1  AGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATC  350

seq1  TGTAACAGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGTCAGTGACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGTCAGTGACAGT  400

seq1  GGACTCATATGCATTAAATAAGTAAATCAATCTTTAAATAAAGGAAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCATATGCATTAAATAAGTAAATCAATCTTTAAATAAAGGAAGTTC  450

seq1  AGGGGCGTCCTCAGCCGTGCAATAAGTTCTGGGCCATTCTAGGATACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCGTCCTCAGCCGTGCAATAAGTTCTGGGCCATTCTAGGATACAGG  500

seq1  AAACATTGTCAAAGACTAGGGGTTGAAGAGATGGCTCAGCAGTCAGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGTCAAAGACTAGGGGTTGAAGAGATGGCTCAGCAGTCAGAGAT  550

seq1  TTGCTGCTTTTCCAGAGGGCCCAGGTTCAATCCCCAGCAGCCACAAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTTTTCCAGAGGGCCCAGGTTCAATCCCCAGCAGCCACAAAAGG  600

seq1  TTCATAACAACCTGTAACTCCAGTTCCAGGAGATCTATCTCCCTCTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACAACCTGTAACTCCAGTTCCAGGAGATCTATCTCCCTCTTCTG  650

seq1  AATTCCATGGGCATCAGGCATGCACAGCAATGCACAGACATACACTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATGGGCATCAGGCATGCACAGCAATGCACAGACATACACTCAGG  700

seq1  CAAAACATTCAGAACATAAATTCAAACTTTTTTTTACAGTTTACGGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTCAGAACATAAATTCAAACTTTTTTTTACAGTTTACGGCCAG  750

seq1  TGAGATGGCTTAGTACATAGAGTGCTTGCCAAGCAGGCTTGATAATCTGA  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAGATGGCTTAGTACATAGAGTGCTTGCCAAGCA-GCTTGATAATCTGA  799

seq1  ACTAAATCCCCAGAACCAACGGTGGCAGGAGAGAATGGAC-TCCCAAAAG  849
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  ACTAAATCCCCAGAACCAACGGTGGCAGGAGAGAATGGACTTCCAAAAAG  849

seq1  TGTTCTTCTAAATGCTGTATG-TGCATTGCAGCATCCATGTG-CCTGCTC  897
      ||||| ||| ||||||||||| |||||||||||||||||||| |||||||
seq2  TGTTCCTCTTAATGCTGTATGTTGCATTGCAGCATCCATGTGCCCTGCTC  899

seq1  AAGTGTGTGTG  908
      ||||| |||||
seq2  AAGTG-GTGTG  909

seq1: chr7_123501231_123502304
seq2: B6Ng01-170L02.g_66_1143 (reverse)

seq1  TTATGATTATAACTCAGAAATCTCAACAGG--TAATAGATTCTTCTCTAA  48
      |||||| || ||||||||||||| ||||||   |||| |||||||| |||
seq2  TTATGAATA-AACTCAGAAATCT-AACAGGGTAAATAAATTCTTCT-TAA  47

seq1  TACTCCAGTCCTTCTGCTTCACATAGATTATTTCTGTTTCTAAAAACCAA  98
      || ||||||||||  ||| |||||||| |  ||||| || | ||||||||
seq2  TAATCCAGTCCTTTGGCTACACATAGAATTATTCTGATT-TCAAAACCAA  96

seq1  AGGCCG-GATAAGTAGCATACCCTACAATATTCAGCACATGGGAAGCTCT  147
      ||||||  |||  ||||||||||||||||| |||||||||||| ||||||
seq2  AGGCCGATATAGATAGCATACCCTACAATA-TCAGCACATGGGGAGCTCT  145

seq1  AGCAGGATGAT-CCAGGGTTC-AAAGCCAGCCATGACTATACTGAG-GGA  194
      ||||||||||| ||||||||| |||||   |||||||||||||||| |||
seq2  AGCAGGATGATCCCAGGGTTCAAAAGCACACCATGACTATACTGAGAGGA  195

seq1  TATTGTCTCACACAAACATTCCCCTAGGTAATGTCACTCCTGTTTTTGCA  244
      ||| || |||||||||||||||||||||||| ||||||||||||||||||
seq2  TATGGTTTCACACAAACATTCCCCTAGGTAAGGTCACTCCTGTTTTTGCA  245

seq1  GCTTGGCCAACCTAATGGTGCCTGCCTGCTATAGTCAGATTGGCCTAGGG  294
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  GCTTGGCCAACCTAATGGTGCCTGCCTGCTATAATCAGATTGGCCTAGGA  295

seq1  CTAAAGTTGT-CCCCAGTCC-TATCTGAGAAGACTGAGTGTATGTCAGTA  342
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  CTAAAGTTGTCCCCCAGTCCTTATCTGAGAAGACTGAGTGTATGTCAGTA  345

seq1  ATATTTTTACAGAACTACTCAC-TTTTTTTTTTTTTTTTTTTGAGACAGA  391
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATTTTTACAGAACTACTCACTTTTTTTTTTTTTTTTTTTTGAGACAGA  395

seq1  GTCTCATGTCAAGATCAGCCTACAACTTGCAGTCCTCCTTTCCTACGCTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGTCAAGATCAGCCTACAACTTGCAGTCCTCCTTTCCTACGCTT  445

seq1  TCTTGAGCATTGCATTACAAGTGTATGTTACCACCTTAAATTTTACTGAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGCATTGCATTACAAGTGTATGTTACCACCTTAAATTTTACTGAT  495

seq1  TCAACTTCAATTTCAAATAAATGTTTAATAAATTTGGTTAAAAGAATTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTCAATTTCAAATAAATGTTTAATAAATTTGGTTAAAAGAATTTT  545

seq1  TAAGCTGCCATTTTTCCCTCAGTGACCTAGTTGAACACATGGTGCAAATC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGCCATTTTTCCCTCAGTGACCTAGTTGAACACATGGTGCAAATC  595

seq1  CATTGTATAGTATAGGTATTTGAGAAGTTCAACCAGGAGAAGAATCCCTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATAGTATAGGTATTTGAGAAGTTCAACCAGGAGAAGAATCCCTT  645

seq1  AAGTCTAGGCCTTCAGCCAGGCAATACAGAGGAATTATCATTAAAAAAAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAGGCCTTCAGCCAGGCAATACAGAGGAATTATCATTAAAAAAAC  695

seq1  AAAACAAAAAACAAGAAGCCTAGTATGGTGGCACACACCTTTAATCCCAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAACAAGAAGCCTAGTATGGTGGCACACACCTTTAATCCCAG  745

seq1  CGCTCAGGAGGTGGAAATGGGGAGATAGCTGCTTAAGTTCAATTCCAGTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCAGGAGGTGGAAATGGGGAGATAGCTGCTTAAGTTCAATTCCAGTC  795

seq1  TGGTCTACATAGCAAGTTCTAGGATAGCCAGGGTTATATAGAGACCCCGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACATAGCAAGTTCTAGGATAGCCAGGGTTATATAGAGACCCCGT  845

seq1  CTCAAAACCAAACCAAATGCACCTCGCCCCCACAAACCCCAAGAGACAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACCAAACCAAATGCACCTCGCCCCCACAAACCCCAAGAGACAAA  895

seq1  AAACAAAGAATAACTCTAGCCCTCTCACCTTAAACATGACATTAATTTCT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAATAACTCTAGCCCTCTCACCTTAAACATGACATTAATTTCT  945

seq1  TCCCCCAGAGGGTCAGCATTCACCATTGTGACTTTCAGAGGCATAGCATT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGAGGGTCAGCATTCACCATTGTGACTTTCAGAGGCATAGCATT  995

seq1  AGAACTGAAGAACGAACATGACTGCAAACACAACACTAAACATTAGAAAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAAGAACGAACATGACTGCAAACACAACACTAAACATTAGAAAC  1045

seq1  GTTAACACTAGCATAAAAGTGAATTATGAATTC  1074
      |||||||||||||||||||| ||||||||||||
seq2  GTTAACACTAGCATAAAAGTAAATTATGAATTC  1078