BAC Information

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BAC

Clone NameB6Ng01-171J12
Chromosome7 (Build37)
Map Location 138,241,976 - 138,242,993
singlet/doubletsinglet
Overlap geneDmbt1
Upstream geneFgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1
Downstream gene4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171J12.bB6Ng01-171J12.g
ACCGA000436GA000437
length1,0181,154
definitionB6Ng01-171J12.b B6Ng01-171J12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagttttgctctcagtatgtgagaaacttgagggttagagtgttc
cagtgactggtcttgtggcgatttttttattttgttacatttttatttaa
tgtgtttgagtgtattttgtgtagatgtatgtctctggattgcatgtttg
cctggtccccacacaggtgaggagaaggtgtttaattccctggatagtga
ggtaatcacagtactgagctttgacgtaggtgctgggaatcaaaccttag
ttctcttgaataacaggcagtgcacagaaccactgagccatctttctacc
acttgccttgagtgtatgtctccttttttatattcactagagatgtttat
tttttcccaaagataattgaggacttttgaaggaactaattagtatgtcc
ttaggtgagattcctgtgttgatgtaaaggctttcaaggagaggtattat
ggattgcatatctgtgagccacaaaggtagaattttacaagggatgctgg
gcatgggaagatagatgaattacctttggattccaggtagccatctactc
ttcaaatgatgtagttagtcactgttatcaggacaatggctccacagatg
tgaaccccacatcacattccagacacagaaaagggtccttttccttttgt
gtcctcaggcttgaaggaggctgcaactatgactatatcctggtttatga
tggccctgaatacaattcttctctcattgctcgggtttgtgatggttcca
atggctctttcacctcaaccggaaacttcatgtccgtagtcttcatcaca
gatggcagtgtgacaaggagagggttccaggctcactactactctacagt
cagcacaagtaaggtcccttgtgagaatgaatgtccatgtgggatcaggg
atgttcacaagggactatctgagcctagattttctgagtttgtgacaagg
gtatagagtgtaccctgggtccatgcttgctggagaggactgtggccata
tagtccttggttctgact
gaattccacataaaaccagagacactgaaacttatagaggagaaagtagg
gaaaagcctcgaagatatgggtacaggaggaaaattcctgaatagaacag
caatggcttgtgctgtaagatccagaatcgataaatgggacctcataaag
ttgcaaagcttctgcaaggcaaaggacactgtcaataagacaaaaagacc
accaacagattgggaaaggatctttacctatcctaaatcagataggggac
tgatatccaatatatataaagaactcaagaaggtggactccagaaaatca
aataaccccattaaaaaatggggctcagaagctgaacaaagaattctcac
ctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatcc
ttaatcatcagggaaatgcaaatcaaaacaacaccgagattccacttcac
tccagtcagaatggctaagatcaaaaactcaggtgacagcagatgctggc
gaggatgtggagaaagaggaacactcctccattgttggtgggattgcaag
cttgtacaaccactctggaaatcagtctggcagttcctcagaaaattgga
catagtactaccagaggatcccgcaatacctctcctgggcatatatccag
aagatgttccaaccggtaagaaggacacatgcttcactatgttcatagca
gccttatttataatagccagaaactggaaagaacccagatgctcctcaac
agaggaatggatacagaaaatgtggtacatttacacaatggaatactact
cagctattaaaaacaatgaatttatgaaattcctaggcaaatgggatgga
cctggagggcatcatcccgagtggggtaacccaatcacaaagggaactca
cacaatatgtacttcactgatagtgattattagcccagaaacttaagaat
acccaagaatataagtacattgcttaacacaatgaaactcagagatgaaa
acaagtggtggaacacacttgcccttctagagtggacaaaacacccatgg
agagttacagagaacaaagcttgagctggacaaacgattgaacatctaaa
gaactgcaatcccgaatccatcatatcagcttccaacgctgacactcatc
gtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_138241976_138242993
seq2: B6Ng01-171J12.b_35_1052

seq1  GAATTCAGTTTTGCTCTCAGTATGTGAGAAACTTGAGGGTTAGAGTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTGCTCTCAGTATGTGAGAAACTTGAGGGTTAGAGTGTTC  50

seq1  CAGTGACTGGTCTTGTGGCGATTTTTTTATTTTGTTACATTTTTATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTGGTCTTGTGGCGATTTTTTTATTTTGTTACATTTTTATTTAA  100

seq1  TGTGTTTGAGTGTATTTTGTGTAGATGTATGTCTCTGGATTGCATGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGAGTGTATTTTGTGTAGATGTATGTCTCTGGATTGCATGTTTG  150

seq1  CCTGGTCCCCACACAGGTGAGGAGAAGGTGTTTAATTCCCTGGATAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCCCACACAGGTGAGGAGAAGGTGTTTAATTCCCTGGATAGTGA  200

seq1  GGTAATCACAGTACTGAGCTTTGACGTAGGTGCTGGGAATCAAACCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCACAGTACTGAGCTTTGACGTAGGTGCTGGGAATCAAACCTTAG  250

seq1  TTCTCTTGAATAACAGGCAGTGCACAGAACCACTGAGCCATCTTTCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTGAATAACAGGCAGTGCACAGAACCACTGAGCCATCTTTCTACC  300

seq1  ACTTGCCTTGAGTGTATGTCTCCTTTTTTATATTCACTAGAGATGTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTTGAGTGTATGTCTCCTTTTTTATATTCACTAGAGATGTTTAT  350

seq1  TTTTTCCCAAAGATAATTGAGGACTTTTGAAGGAACTAATTAGTATGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCAAAGATAATTGAGGACTTTTGAAGGAACTAATTAGTATGTCC  400

seq1  TTAGGTGAGATTCCTGTGTTGATGTAAAGGCTTTCAAGGAGAGGTATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGAGATTCCTGTGTTGATGTAAAGGCTTTCAAGGAGAGGTATTAT  450

seq1  GGATTGCATATCTGTGAGCCACAAAGGTAGAATTTTACAAGGGATGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCATATCTGTGAGCCACAAAGGTAGAATTTTACAAGGGATGCTGG  500

seq1  GCATGGGAAGATAGATGAATTACCTTTGGATTCCAGGTAGCCATCTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGAAGATAGATGAATTACCTTTGGATTCCAGGTAGCCATCTACTC  550

seq1  TTCAAATGATGTAGTTAGTCACTGTTATCAGGACAATGGCTCCACAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGATGTAGTTAGTCACTGTTATCAGGACAATGGCTCCACAGATG  600

seq1  TGAACCCCACATCACATTCCAGACACAGAAAAGGGTCCTTTTCCTTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCCACATCACATTCCAGACACAGAAAAGGGTCCTTTTCCTTTTGT  650

seq1  GTCCTCAGGCTTGAAGGAGGCTGCAACTATGACTATATCCTGGTTTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGGCTTGAAGGAGGCTGCAACTATGACTATATCCTGGTTTATGA  700

seq1  TGGCCCTGAATACAATTCTTCTCTCATTGCTCGGGTTTGTGATGGTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTGAATACAATTCTTCTCTCATTGCTCGGGTTTGTGATGGTTCCA  750

seq1  ATGGCTCTTTCACCTCAACCGGAAACTTCATGTCCGTAGTCTTCATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTTTCACCTCAACCGGAAACTTCATGTCCGTAGTCTTCATCACA  800

seq1  GATGGCAGTGTGACAAGGAGAGGGTTCCAGGCTCACTACTACTCTACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGTGTGACAAGGAGAGGGTTCCAGGCTCACTACTACTCTACAGT  850

seq1  CAGCACAAGTAAGTTCCCTTGTGAGAATGAATGTCCATGTGGGATCAGGG  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAGTAAGGTCCCTTGTGAGAATGAATGTCCATGTGGGATCAGGG  900

seq1  ATG-TCACAAGGGACTATCTGAGCCTAAGATTTCTGAGTTTGTGACAAGG  949
      ||| |||||||||||||||||||||||   ||||||||||||||||||||
seq2  ATGTTCACAAGGGACTATCTGAGCCTAGATTTTCTGAGTTTGTGACAAGG  950

seq1  GTAATAGAGTGGTACCCTGGGTCCCATGCTTGCTGAGAG-GGACTGTGGC  998
      || ||||||| ||||||||||| |||||||||||| ||| ||||||||||
seq2  GT-ATAGAGT-GTACCCTGGGT-CCATGCTTGCTG-GAGAGGACTGTGGC  996

seq1  CATA-AGT-CTTGGTTCTGACT  1018
      |||| ||| |||||||||||||
seq2  CATATAGTCCTTGGTTCTGACT  1018