BAC Information

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BAC

Clone NameB6Ng01-171K01
Chromosome7 (Build37)
Map Location 96,244,999 - 96,336,408
singlet/doubletdoublet
Overlap geneTmem135
Upstream geneGrm5, Ctsc, LOC100039756, Rab38, LOC100039924, LOC666598, EG621562
Downstream geneLOC100039969, Fzd4, Prss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171K01.bB6Ng01-171K01.g
ACCGA000458GA000459
length1,108984
definitionB6Ng01-171K01.b B6Ng01-171K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,244,999 - 96,246,119)(96,335,434 - 96,336,408)
sequence
gaattctctactactaagaatggcttctctctccactcagattgccccta
ccagaagtaagtgtcatcttgttactcttgtcattgtctctcatgtctac
tctactaccaaattccaccactcttaactcatcctcatctttctaagcca
aacctacccacggtctccattctccagtttatctttgctcatatcttttg
aatgtttcctgttatctccactcctgctttatctttaattcctttgctgt
caccctggctatggaacttcacaaaactctacttctccaagcaaaacatt
aagcatatttctcaatacacaatactgtcataatcatttgcttcatgatg
ctacaggaacaggcccttattcagtgtgtgtccctggctacttaggttgc
caccagtttcatcttgggtatcacaaaagaaaatggaaagtcatttacat
tttcaataattctttatgagttaataaagcaaaggaatgagaatattgtc
tgttgtccaccctccataccaattgctagggcatggaacatttgtgtctt
tgtcaacactctgacacattaatgacagcaacagggcagtgattcagttc
tgtgacatggtcctgagtggtacttattttttatgtccctcataaccaat
tgccacatactctagtcacattttgtgctattgttgctgttgttattctt
tgctctttgaaacaaggtctcactggctcctctcaactatcctagaatgc
actatgcagcttacattggcctaaattcattgtgaccttctgccttagat
ttctgagtgttctaattataggaatgggtcaccatacccaacacaacccc
attttctgtttgactgatttttttcaagcatcttcttccccttcccttta
gccacattgcccatgctgaagagaaggccccaacttcaccttcctctttg
gtgccaagtgggaaactgagttactcctttatcctcacactgcaacatgt
aaactctgcttcttcagcactggagaatctgattgctttaaacaacacct
cttctgctctgacagttagatattggttacatcggtgtataattttctat
tattcttt
gaattccattcgggcctgtgagaagtgtcccttctttccatcatcaagcc
tcctgtaagaagggggctaggagcttctcattgtctacaggagtatctcc
ctgggaaagaaatggtgagagacaaatgccgcagcacagtgtgacaagtg
cccccaggccccatatttccatgggtcatctgctaggagcttgaaagagc
tgatattttctcagttgggttatgttcctttctgtgacttcttttttttt
cctctttttgtccacatttttttttaatgctagtaatcacacaacattgg
ttttacttgggaaatgttttttgtcctttgctatctaaagggaataatac
catctgtacataaagtatatagcatgtgatatgtggtatcataaaacagt
ggcaagatcatattataataaatctgattcacactgcacatgtctcagct
agggagtatggcagatgctgcatttataagtggtatttaaaaagcctttg
taggtcatttcagcataatcatatcttatcagaggtcatgaggctggtgc
tgaagatgacttatagacagagttacagcatcaggaggcagtgattagag
gtgtgaggatgttgaaaagaaagggagggaggcttagaggcatggtggag
agaatctgctgtcttccttccagacactacctttttgtctttccttctct
tcacatccaggtttttcaaattacttgtccgtatttgccttttgctgttc
ttacaatgtcactgcaatgtgatctccgccccttgagtctccagaatttt
ctcttctccgattgccatcagaaacagcctttcctctaatggatatttac
cgtttcctttcatagaaagtccttcagctacctagagcatcttgcccccc
cttttcttatgaccctttcccttagttttttctaagatgattcattcttg
acttcttctctctctctattcccttcctcagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_96244999_96246119
seq2: B6Ng01-171K01.b_39_1146

seq1  GAATTCTCTACTACTAAGAATGGCTTCTCTCTCCACTCAGATTGCCCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTACTAAGAATGGCTTCTCTCTCCACTCAGATTGCCCCTA  50

seq1  CCAGAAGTAAGTGTCATCTTGTTACTCTTGTCATTGTCTCTCATGTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGTAAGTGTCATCTTGTTACTCTTGTCATTGTCTCTCATGTCTAC  100

seq1  TCTACTACCAAATTCCACCACTCTTAACTCATCCTCATCTTTCTAAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACCAAATTCCACCACTCTTAACTCATCCTCATCTTTCTAAGCCA  150

seq1  AACCTACCCACGGTCTCCATTCTCCAGTTTATCTTTGCTCATATCTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACCCACGGTCTCCATTCTCCAGTTTATCTTTGCTCATATCTTTTG  200

seq1  AATGTTTCCTGTTATCTCCACTCCTGCTTTATCTTTAATTCCTTTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCCTGTTATCTCCACTCCTGCTTTATCTTTAATTCCTTTGCTGT  250

seq1  CACCCTGGCTATGGAACTTCACAAAACTCTACTTCTCCAAGCAAAACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGGCTATGGAACTTCACAAAACTCTACTTCTCCAAGCAAAACATT  300

seq1  AAGCATATTTCTCAATACACAATACTGTCATAATCATTTGCTTCATGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATTTCTCAATACACAATACTGTCATAATCATTTGCTTCATGATG  350

seq1  CTACAGGAACAGGCCCTTATTCAGTGTGTGTCCCTGGCTACTTAGGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGAACAGGCCCTTATTCAGTGTGTGTCCCTGGCTACTTAGGTTGC  400

seq1  CACCAGTTTCATCTTGGGTATCACAAAAGAAAATGGAAAGTCATTTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTTTCATCTTGGGTATCACAAAAGAAAATGGAAAGTCATTTACAT  450

seq1  TTTCAATAATTCTTTATGAGTTAATAAAGCAAAGGAATGAGAATATTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATAATTCTTTATGAGTTAATAAAGCAAAGGAATGAGAATATTGTC  500

seq1  TGTTGTCCACCCTCCATACCAATTGCTAGGGCATGGAACATTTGTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCCACCCTCCATACCAATTGCTAGGGCATGGAACATTTGTGTCTT  550

seq1  TGTCAACACTCTGACACATTAATGACAGCAACAGGGCAGTGATTCAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACACTCTGACACATTAATGACAGCAACAGGGCAGTGATTCAGTTC  600

seq1  TGTGACATGGTCCTGAGTGGTACTTATTTTTTATGTCCCTCATAACCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATGGTCCTGAGTGGTACTTATTTTTTATGTCCCTCATAACCAAT  650

seq1  TGCCACATACTCTAGTCACATTTTGTGCTATTGTTGCTGTTGTTATTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATACTCTAGTCACATTTTGTGCTATTGTTGCTGTTGTTATTCTT  700

seq1  TGCTCTTTGAAACAAGGTCTCACTGGCTCCTCTCAACTATCCTAGAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTTGAAACAAGGTCTCACTGGCTCCTCTCAACTATCCTAGAATGC  750

seq1  ACTATGCAGCTTACATTGGCCTAAATTCATTGTGACCTTCTGCCTTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCAGCTTACATTGGCCTAAATTCATTGTGACCTTCTGCCTTAGAT  800

seq1  TTCTGAGTGTTCTAATTATAGGAATGGGTCACCATACCCAACACAACCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTGTTCTAATTATAGGAATGGGTCACCATACCCAACACAACCCC  850

seq1  ATTTTCTGTTTGACTGATTTTTTTCAAGCATCTTCTTCCCCTTCCCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTTTGACTGATTTTTTTCAAGCATCTTCTTCCCCTTCCCTTTA  900

seq1  GCCACATTGCCCATGCTGAAGAGAAGGCCCCAACTTCACCTTCCTCTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATTGCCCATGCTGAAGAGAAGGCCCCAACTTCACCTTCCTCTTTG  950

seq1  GTGCCAAGTTGGAAACTTGAGTTACTCCTTTAT-CTCACACTTGCAAACA  999
      ||||||||| |||||| |||||||||||||||| ||||||| ||| ||||
seq2  GTGCCAAGTGGGAAAC-TGAGTTACTCCTTTATCCTCACAC-TGC-AACA  997

seq1  TTGTAAACTCTGC-TCTTCAGGCACTGGAG-ATCTGAGTGGCTTAAAC-A  1046
       |||||||||||| |||||| ||||||||| |||||| ||  |||||| |
seq2  -TGTAAACTCTGCTTCTTCA-GCACTGGAGAATCTGATTGCTTTAAACAA  1045

seq1  CACTTCTTCTGCTCTGACCAGTCTAAGGTATAT-TTGTTTACATCTGTTT  1095
      ||| ||||||||||||||       || || || ||| ||||||| || |
seq2  CACCTCTTCTGCTCTGAC-------AGTTAGATATTGGTTACATCGGTGT  1088

seq1  GTAATAAATTTTCTATTAAATTCTTT  1121
       |    |||||||||||  |||||||
seq2  AT----AATTTTCTATT--ATTCTTT  1108

seq1: chr7_96335434_96336408
seq2: B6Ng01-171K01.g_64_1047 (reverse)

seq1  GAGCTGGAGGAA-GGAATAGAGAGAGAGAAG-AGTCAAGAATGAATCATC  48
      ||||| |||||| |||||||||||||||||| ||||||||||||||||||
seq2  GAGCT-GAGGAAGGGAATAGAGAGAGAGAAGAAGTCAAGAATGAATCATC  49

seq1  TTAG-AAAAACTAAGGGAAAGGGTCATAAG-AAAGGGGGGGCAAGATGCT  96
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTAGAAAAAACTAAGGGAAAGGGTCATAAGAAAAGGGGGGGCAAGATGCT  99

seq1  CTAGGTAGCTGAAGGACCTTCTATGAAAGG-AACGGTAAATATCCATTAG  145
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  CTAGGTAGCTGAAGGACTTTCTATGAAAGGAAACGGTAAATATCCATTAG  149

seq1  AGG-AAGGCTGTTTCTGATGGC-ATCGGAG-AGAG-AAATTCTGGAGACT  191
      ||| |||||||||||||||||| ||||||| |||| ||||||||||||||
seq2  AGGAAAGGCTGTTTCTGATGGCAATCGGAGAAGAGAAAATTCTGGAGACT  199

seq1  CAAGGGGCGGAGATCACATTGCAGTGACA-TGTAAGAACAGCAAAAGGCA  240
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAGGGGCGGAGATCACATTGCAGTGACATTGTAAGAACAGCAAAAGGCA  249

seq1  AATACGGACAAGTAATTTGAAAAACCTGGATGTGAAGAGAAGGAAAGACA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGGACAAGTAATTTGAAAAACCTGGATGTGAAGAGAAGGAAAGACA  299

seq1  AAAAGGTAGTGTCTGGAAGGAAGACAGCAGATTCTCTCCACCATGCCTCT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTAGTGTCTGGAAGGAAGACAGCAGATTCTCTCCACCATGCCTCT  349

seq1  AAGCCTCCCTCCCTTTCTTTTCAACATCCTCACACCTCTAATCACTGCCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCCCTCCCTTTCTTTTCAACATCCTCACACCTCTAATCACTGCCT  399

seq1  CCTGATGCTGTAACTCTGTCTATAAGTCATCTTCAGCACCAGCCTCATGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGCTGTAACTCTGTCTATAAGTCATCTTCAGCACCAGCCTCATGA  449

seq1  CCTCTGATAAGATATGATTATGCTGAAATGACCTACAAAGGCTTTTTAAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGATAAGATATGATTATGCTGAAATGACCTACAAAGGCTTTTTAAA  499

seq1  TACCACTTATAAATGCAGCATCTGCCATACTCCCTAGCTGAGACATGTGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTATAAATGCAGCATCTGCCATACTCCCTAGCTGAGACATGTGC  549

seq1  AGTGTGAATCAGATTTATTATAATATGATCTTGCCACTGTTTTATGATAC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAATCAGATTTATTATAATATGATCTTGCCACTGTTTTATGATAC  599

seq1  CACATATCACATGCTATATACTTTATGTACAGATGGTATTATTCCCTTTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATCACATGCTATATACTTTATGTACAGATGGTATTATTCCCTTTA  649

seq1  GATAGCAAAGGACAAAAAACATTTCCCAAGTAAAACCAATGTTGTGTGAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAAAGGACAAAAAACATTTCCCAAGTAAAACCAATGTTGTGTGAT  699

seq1  TACTAGCATTAAAAAAAAATGTGGACAAAAAGAGGAAAAAAAAAGAAGTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCATTAAAAAAAAATGTGGACAAAAAGAGGAAAAAAAAAGAAGTC  749

seq1  ACAGAAAGGAACATAACCCAACTGAGAAAATATCAGCTCTTTCAAGCTCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGGAACATAACCCAACTGAGAAAATATCAGCTCTTTCAAGCTCC  799

seq1  TAGCAGATGACCCATGGAAATATGGGGCCTGGGGGCACTTGTCACACTGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGATGACCCATGGAAATATGGGGCCTGGGGGCACTTGTCACACTGT  849

seq1  GCTGCGGCATTTGTCTCTCACCATTTCTTTCCCAGGGAGATACTCCTGTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGGCATTTGTCTCTCACCATTTCTTTCCCAGGGAGATACTCCTGTA  899

seq1  GACAATGAGAAGCTCCTAGCCCCCTTCTTACAGGAGGCTTGATGATGGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGAGAAGCTCCTAGCCCCCTTCTTACAGGAGGCTTGATGATGGAA  949

seq1  AGAAGGGACACTTCTCACAGGCCCGAATGGAATTC  975
      |||||||||||||||||||||||||||||||||||
seq2  AGAAGGGACACTTCTCACAGGCCCGAATGGAATTC  984