BAC Information

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BAC

Clone NameB6Ng01-171M01
Chromosome7 (Build37)
Map Location 19,724,520 - 19,847,090
singlet/doubletdoublet
Overlap geneQpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp
Upstream geneIgfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46
Downstream geneC79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171M01.bB6Ng01-171M01.g
ACCGA000549GA000550
length802731
definitionB6Ng01-171M01.b B6Ng01-171M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,724,520 - 19,725,316)(19,846,362 - 19,847,090)
sequence
gaattcattctatcccaggcaggccttgaacttaatgagcaaagatgaac
agacctgtgtcatcattcctggctcttctgtgagttatggctcaggttcc
caggaactgtgctgaagttgactagaactagtggactccctcattattag
cacttcatcttacttagatggatggttttgcacacactaagcaaatccta
ggtgaccgactgggctcatcctggttcccaccacctgtggttttcctgga
gtgtgtttcctaagcaactgtgcattcaccaaactggccttaagagtaag
ttggtctaattgagacaggattcattgtgtaaccctggctgtccccgaaa
tctacttgcttctgtctctcgggtactgagattgaaggtgcagtcatgac
ccactatgatgtgatgatgccctgttggtactgtagtaggtttggggtga
atcttggaagcctgttttattttcattttatttttttatttttggttggt
tagaagggatatttttggtttttaattttttggttttgttttagcttttt
gaagcagggtttctgtgttggccctggctgtcctgaaacttactctgtag
accaggctggcatggaactcagagatccacctgcctctactgcctgagtg
ctgggattaaaagcgtgcgccaccaccacccagctagggagcctggcttt
gtttttgttttgtttgttgggcttgagaacctctgggctggctatggcaa
ggtataaacctgtttatcccagcactcaggactgagtatgaaggattctg
ag
gaattccaggctggccttagaaattagtcaggggtgctgttgtacaaatc
agcacggtggtgcgcacctttccaagcattcagaaagcagaggcaggtgg
atctgcaagttagaacttcatctggtctacaaagttctaggctaacctat
gctacacagtgagaccttgtctaaaaagagaaagaaaatctaacccctcc
ccaaaaagaatctgatgagggaatgaaccatgctggtaccaccccctctt
cccccccccccccccccccgtgcccctactccacaccaggactccacctt
tctgagcccatggccactttggaatcatctgcttgcatagttgtaaagaa
cgtacccaggctccatccatgcctcctgccccttgttctcatccttcttt
ccctgggccctcggaaggcagacttggatggaggggaggcaccagcctcc
ttggtgacctgagagatgaaccagttagcttggtttggggactgaagcag
cctcctttctcccccctcccccgtacaggcagccggagcatatggagcgc
cgggtctccaatgcaggtgatggccgtgactgggtcacggggacctccct
ggaggagctgtttgggcagggaggacacaaagccagggcttctctctcag
taggaccattctctgtgtttatggcaggaggcccacctgctcccccagct
ggtgggccctcctccacctccaggacctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19724520_19725316
seq2: B6Ng01-171M01.b_38_839

seq1  GAATTCATTCTATCCCAGGCAGGCCTTGAACTTAATGAGCAAAGATGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTATCCCAGGCAGGCCTTGAACTTAATGAGCAAAGATGAAC  50

seq1  AGACCTGTGTCATCATTCCTGGCTCTTCTGTGAGTTATGGCTCAGGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTGTCATCATTCCTGGCTCTTCTGTGAGTTATGGCTCAGGTTCC  100

seq1  CAGGAACTGTGCTGAAGTTGACTAGAACTAGTGGACTCCCTCATTATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTGTGCTGAAGTTGACTAGAACTAGTGGACTCCCTCATTATTAG  150

seq1  CACTTCATCTTACTTAGATGGATGGTTTTGCACACACTAAGCAAATCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATCTTACTTAGATGGATGGTTTTGCACACACTAAGCAAATCCTA  200

seq1  GGTGACCGACTGGGCTCATCCTGGTTCCCACCACCTGTGGTTTTCCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACCGACTGGGCTCATCCTGGTTCCCACCACCTGTGGTTTTCCTGGA  250

seq1  GTGTGTTTCCTAAGCAACTGTGCATTCACCAAACTGGCCTTAAGAGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTCCTAAGCAACTGTGCATTCACCAAACTGGCCTTAAGAGTAAG  300

seq1  TTGGTCTAATTGAGACAGGATTCATTGTGTAACCCTGGCTGTCCCCGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTAATTGAGACAGGATTCATTGTGTAACCCTGGCTGTCCCCGAAA  350

seq1  TCTACTTGCTTCTGTCTCTCGGGTACTGAGATTGAAGGTGCAGTCATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTGCTTCTGTCTCTCGGGTACTGAGATTGAAGGTGCAGTCATGAC  400

seq1  CCACTATGATGTGATGATGCCCTGTTGGTACTGTAGTAGGTTTGGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATGATGTGATGATGCCCTGTTGGTACTGTAGTAGGTTTGGGGTGA  450

seq1  ATCTTGGAAGCCTGTTTTATTTTCATTTTATTTTTTTATTTTTGGTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGAAGCCTGTTTTATTTTCATTTTATTTTTTTATTTTTGGTTGGT  500

seq1  TAGAAGGGATATTTTTGGTTTTTAATTTTTTGGTTTTGTTTTAGCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGGATATTTTTGGTTTTTAATTTTTTGGTTTTGTTTTAGCTTTTT  550

seq1  GAAGCAGGGTTTCTGTGTTGGCCCTGGCTGTCCTGAAACTTACTCTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGTTTCTGTGTTGGCCCTGGCTGTCCTGAAACTTACTCTGTAG  600

seq1  ACCAGGCTGGCATGGAACTCAGAGATCCACCTGCCTCTACTGCCTGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCATGGAACTCAGAGATCCACCTGCCTCTACTGCCTGAGTG  650

seq1  CTGGGATTAAAAGCGTGCGCCACCACCACCCAGCTAGGGAGCCTGGC-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGGGATTAAAAGCGTGCGCCACCACCACCCAGCTAGGGAGCCTGGCTTT  700

seq1  GTTTTTG-TTTGTTTGTTGGGCTTGAGAACCTCT-GGCTGGCTATGGCAA  747
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  GTTTTTGTTTTGTTTGTTGGGCTTGAGAACCTCTGGGCTGGCTATGGCAA  750

seq1  GGTATAAACCTG-TTATCCCAGCACTCAGGACTGAGTAGGAA-GATTCTG  795
      |||||||||||| ||||||||||||||||||||||||| ||| |||||||
seq2  GGTATAAACCTGTTTATCCCAGCACTCAGGACTGAGTATGAAGGATTCTG  800

seq1  AG  797
      ||
seq2  AG  802

seq1: chr7_19846362_19847090
seq2: B6Ng01-171M01.g_65_795 (reverse)

seq1  GGGAGGTCCTGGAGGTGGAGGAGGGCCC-CCAGCTGGGGGAGCAGGTGGG  49
      | |||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGAGGTCCTGGAGGTGGAGGAGGGCCCACCAGCTGGGGGAGCAGGTGGG  50

seq1  CCTCCTGCAATAAACACAGAGAATGGTCCTACTGAGAGAGAAG-CCTGGC  98
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  CCTCCTGCCATAAACACAGAGAATGGTCCTACTGAGAGAGAAGCCCTGGC  100

seq1  TTTGTGTCCTCCCTGCCCAACCAGCTCCTCCAGGGAGGTCCCCGTGACCC  148
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTGTGTCCTCCCTGCCCAAACAGCTCCTCCAGGGAGGTCCCCGTGACCC  150

seq1  AGTCACGGCCATCACCTGCATTGGAGACCCGGCGCTCCATATGCTCCGGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACGGCCATCACCTGCATTGGAGACCCGGCGCTCCATATGCTCCGGC  200

seq1  TGCCTGTACGGGGGAGGGGGGAGAAAGGAGGCTGCTTCAGTCCCCAAACC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTACGGGGGAGGGGGGAGAAAGGAGGCTGCTTCAGTCCCCAAACC  250

seq1  AAGCTAACTGGTTCATCTCTCAGGTCACCAAGGAGGCTGGTGCCTCCCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAACTGGTTCATCTCTCAGGTCACCAAGGAGGCTGGTGCCTCCCCT  300

seq1  CCATCCAAGTCTGCCTTCCGAGGGCCCAGGGAAAGAAGGATGAGAACAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAAGTCTGCCTTCCGAGGGCCCAGGGAAAGAAGGATGAGAACAAG  350

seq1  GGGCAGGAGGCATGGATGGAGCCTGGGTACGTTCTTTACAACTATGCAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAGGCATGGATGGAGCCTGGGTACGTTCTTTACAACTATGCAAG  400

seq1  CAGATGATTCCAAAGTGGCCATGGGCTCAGAAAGGTGGAGTCCTGGTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATTCCAAAGTGGCCATGGGCTCAGAAAGGTGGAGTCCTGGTGTG  450

seq1  GAGTAGGGGCACGGGGGGGGGGGGGGGGGGGAAGAGGGGGTGGTACCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGGGCACGGGGGGGGGGGGGGGGGGGAAGAGGGGGTGGTACCAGC  500

seq1  ATGGTTCATTCCCTCATCAGATTCTTTTTGGGGAGGGGTTAGATTTTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCATTCCCTCATCAGATTCTTTTTGGGGAGGGGTTAGATTTTCTT  550

seq1  TCTCTTTTTAGACAAGGTCTCACTGTGTAGCATAGGTTAGCCTAGAACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTAGACAAGGTCTCACTGTGTAGCATAGGTTAGCCTAGAACTT  600

seq1  TGTAGACCAGATGAAGTTCTAACTTGCAGATCCACCTGCCTCTGCTTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGATGAAGTTCTAACTTGCAGATCCACCTGCCTCTGCTTTCT  650

seq1  GAATGCTTGGAAAGGTGCGCACCACCGTGCTGATTTGTACAACAGCACCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTGGAAAGGTGCGCACCACCGTGCTGATTTGTACAACAGCACCC  700

seq1  CTGACTAATTTCTAAGGCCAGCCTGGAATTC  729
      |||||||||||||||||||||||||||||||
seq2  CTGACTAATTTCTAAGGCCAGCCTGGAATTC  731