BAC Information

Click to search

BAC

Clone NameB6Ng01-171M04
Chromosome7 (Build37)
Map Location 50,796,287 - 50,797,328
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33
Downstream geneBC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171M04.bB6Ng01-171M04.g
ACCGA000555GA000556
length8331,033
definitionB6Ng01-171M04.b B6Ng01-171M04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataaagttgcaggacacaaaaccaacacacaaaaatagatttt
gtttctccacactaacaacaaactacaagaaaaaaggtaaggaaaagaaa
atccatttataataacatcagaaacaatgaactatctaggagaatattta
tctaagtagatataaagccttttttaccaaaaactataacaatattggtc
aaagacattgaagagaacacaaataaatggaaagatatcccatgatgatg
gatgtgaaaggaatgatgccattaaaatgtctgtgctacaaactgatcag
tgtgattcttatcaaaattccagtcacggggctgggtaaatggtttggtg
agtcaaatgctcgttatgctagcctgaggagctgagttgggatcccccag
cacccatgtaagaggttgggtgtggcagcatgtccctggagctccagcat
tgtgcggagttggaagaagtggagacagtaggatcctatggagcccggca
tgaactccaggttcaaaaagaaagccgatctcaaaaacatggggtggaga
tggctcagtgctcaagggtttacactgctttttttttttttttttttttt
tttgcagaagacatgagttcagttcccagcacccacattaggtgactcat
aacctcctgtaactccagccctaaggggttcccacaacctcttctggcct
catcagtactacattcatgttggtggatatatacgtggttgtgcaaaacc
catacacagaacaagaataaataaacctcccaaaaaactataagatacag
aggaattaatcccaaaccaccggtctgatgaag
gaattcactcatcagtgaacaatttctgatgtcatctatcttagttaggg
ttactattgctgtgatgaaacaccatgatccaagcaggaaagggtttatt
tgggttacacttccaaatttctgttcatcattgaaagaagtcaggacaag
aattcaaataaggcaaaatcctggaggcaggagttgatgcaaaggctatg
gtgctggttactggcttgctccttatggattgttaagcctgttttcttag
agaacccatgagcgccaagccagtagtgacactgctcacactgggctggg
cctccctaacaaccactagttaagaaaacgccctaagacttgcactgttt
tatggaggcattttctcatttgagacttcatcctttctgatgacttctgt
ttgtgtaaagttggcataaaactagccaacacagcatcacttagaccatt
attcactatggatagcatttatttgcttcttggaagatctattaaacaaa
acaatcacaagaactaggtagaaaatgctacttggcctgttctatacaca
gggaaattaagccatgaggagcggtgggtccttcataaggccagccatct
gttgctcatgaccactccctctccagtagatctctttgaaagactgtgtg
tgcagggcactggatctgcaggagggcagcaatgcaaagatggatcaggt
gctagaaggataaagatagattgctaaataaagaggggcattcaagtgag
ctagaaagagatagaatgacattttatcccatgagttcttgtgggtttcc
atgcggtagagatgacatggcagtgccagtagcataagatatgaggtcat
gacagtggcatttgcattgggcatgaagataccttcacagacaggtgcat
gcggcatcctaatgtacaagatgtggcccaatgattacagaaatatggca
cctctgaaactggtctatttttttgctcggatactgtaaattcctaagtg
tttttagcagctacatggtcacacgccttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50796287_50797328
seq2: B6Ng01-171M04.g_64_1096

seq1  GAATTCACTCATCAGTGAACAATTTCTGATGTCATCTATCTTAGTTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCATCAGTGAACAATTTCTGATGTCATCTATCTTAGTTAGGG  50

seq1  TTACTATTGCTGTGATGAAACACCATGATCCAAGCAGGAAAGGGTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTGCTGTGATGAAACACCATGATCCAAGCAGGAAAGGGTTTATT  100

seq1  TGGGTTACACTTCCAAATTTCTGTTCATCATTGAAAGAAGTCAGGACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTACACTTCCAAATTTCTGTTCATCATTGAAAGAAGTCAGGACAAG  150

seq1  AATTCAAATAAGGCAAAATCCTGGAGGCAGGAGTTGATGCAAAGGCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATAAGGCAAAATCCTGGAGGCAGGAGTTGATGCAAAGGCTATG  200

seq1  GTGCTGGTTACTGGCTTGCTCCTTATGGATTGTTAAGCCTGTTTTCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGTTACTGGCTTGCTCCTTATGGATTGTTAAGCCTGTTTTCTTAG  250

seq1  AGAACCCATGAGCGCCAAGCCAGTAGTGACACTGCTCACACTGGGCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCATGAGCGCCAAGCCAGTAGTGACACTGCTCACACTGGGCTGGG  300

seq1  CCTCCCTAACAACCACTAGTTAAGAAAACGCCCTAAGACTTGCACTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTAACAACCACTAGTTAAGAAAACGCCCTAAGACTTGCACTGTTT  350

seq1  TATGGAGGCATTTTCTCATTTGAGACTTCATCCTTTCTGATGACTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGGCATTTTCTCATTTGAGACTTCATCCTTTCTGATGACTTCTGT  400

seq1  TTGTGTAAAGTTGGCATAAAACTAGCCAACACAGCATCACTTAGACCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAAAGTTGGCATAAAACTAGCCAACACAGCATCACTTAGACCATT  450

seq1  ATTCACTATGGATAGCATTTATTTGCTTCTTGGAAGATCTATTAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTATGGATAGCATTTATTTGCTTCTTGGAAGATCTATTAAACAAA  500

seq1  ACAATCACAAGAACTAGGTAGAAAATGCTACTTGGCCTGTTCTATACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCACAAGAACTAGGTAGAAAATGCTACTTGGCCTGTTCTATACACA  550

seq1  GGGAAATTAAGCCATGAGGAGCGGTGGGTCCTTCATAAGGCCAGCCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTAAGCCATGAGGAGCGGTGGGTCCTTCATAAGGCCAGCCATCT  600

seq1  GTTGCTCATGACCACTCCCTCTCCAGTAGATCTCTTTGAAAGACTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCATGACCACTCCCTCTCCAGTAGATCTCTTTGAAAGACTGTGTG  650

seq1  TGCAGGGCACTGGATCTGCAGGAGGGCAGCAATGCAAAGATGGATCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCACTGGATCTGCAGGAGGGCAGCAATGCAAAGATGGATCAGGT  700

seq1  GCTAGAAGGATAAAGATAGATTGCTAAATAAAGAGGGGCATTCAAGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAGGATAAAGATAGATTGCTAAATAAAGAGGGGCATTCAAGTGAG  750

seq1  CTAGAAAGAGATAGAATGACATTTTATCCCATGAGTTCTTGTGGGTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGAGATAGAATGACATTTTATCCCATGAGTTCTTGTGGGTTTCC  800

seq1  ATGCGGTAGAGATGACATGGCAGTGCCAGTAGCATAAGATATGAGGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGTAGAGATGACATGGCAGTGCCAGTAGCATAAGATATGAGGTCAT  850

seq1  GACAGTGGCATTTGCATTGGGCATG-AGATACCCTTCACAGACAGGTGCA  899
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  GACAGTGGCATTTGCATTGGGCATGAAGATA-CCTTCACAGACAGGTGCA  899

seq1  TGCGGCATCCTAATGTTACAGGATGTGGCCC-ATGATTACAG-AATATGG  947
      ||||||||||||||| |||| |||||||||| |||||||||| |||||||
seq2  TGCGGCATCCTAATG-TACAAGATGTGGCCCAATGATTACAGAAATATGG  948

seq1  CCACCTCCTGAAACTGGTCTA-TTTTTTGCTCTGATTAACTGTAAAATTT  996
       ||||| |||||||||||||| |||||||||| |||  ||||||||  ||
seq2  -CACCT-CTGAAACTGGTCTATTTTTTTGCTCGGAT--ACTGTAAA--TT  992

seq1  CCCTAAAGTGTTTTTAGCAGCTACCATGCTCACACGCTCTTTCTCT  1042
      ||   |||||||||||||||||| |||| |||||||  | ||||||
seq2  CC--TAAGTGTTTTTAGCAGCTA-CATGGTCACACG--CCTTCTCT  1033