BAC Information

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BAC

Clone NameB6Ng01-171P01
Chromosome7 (Build37)
Map Location 3,848,152 - 3,849,108
singlet/doubletsinglet
Overlap geneLOC100038908, LOC100038909, Pira11
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749
Downstream genePira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171P01.bB6Ng01-171P01.g
ACCGA000691GA000692
length134973
definitionB6Ng01-171P01.b B6Ng01-171P01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
agtgggaggagcggccctcggcctgagggtggtggaagacccagtgtggg
ggaatgccagggtgggaagacaagagtgggtcggtgggtgggggagcacc
ctcatagaggcaggtggaggggagatggggtagg
gaattctcactctcaaatgtagacctgagtaatgcaggtcaatatcgatg
ttcctacaacacccaggatgaatcatcaggctacagtgaccccctggagc
tggtggtgacaggtgagagaacacacaggatcctaggactcaggttataa
ctgtccagacttggctctgttaacaggaatgcccaccctcactgtgggaa
cctcagagccaaggagaatgaggcctgcggacatttaactgactcctcct
tctctcctaggagactactggacacccagcctttcagcccaggccagccc
tgtggtaacttcaggagggtatgtcaccctccagtgtgagtcctggcaca
acaatcacaggttcattctgactgtagaaggaccacagaagctctcatgg
atgcaagactcacaatataacaactctacaaggaagtaccacgccctgtt
ctctgtgggccctgtgacccccaaccagcgatggatattcagatgttaca
gttatgacaggaacagaccatatgtgtggtcacctccaagtgaatccgtg
gagctcctggtctcaggtgaggaacctcagccttccatagaatgatattg
aaatcatacaggtttcagagaccacttgatgtgcggtgtatgtggggatc
cagggctcttttgaactttgacacagagcacaggaaacagtgagtccaag
actcacagtgacagtcaagcccagagtgcccattagggagatgatgcttt
ataagggcttctgttattctggatcggctttagcacaatccaccagagct
cagagattctggaataacagagagaggaaggatgatggtaagctagagga
ggttgagtgatacccggaagtgacacgcccctggtgagaacaacagaatc
cactaagcatgtaatcctgtagggcttcacagaagcctgcacgggtggta
ccctaaggacttctgcgatacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3848152_3849108
seq2: B6Ng01-171P01.g_66_1038 (reverse)

seq1  ATGTA-CGCAGAGGTCC-TAGGGTA-CACCCGTGCAGGC-TCTGTG-AGC  45
      ||||| |||||| |||| ||||||| ||||||||||||| |||||| |||
seq2  ATGTATCGCAGAAGTCCTTAGGGTACCACCCGTGCAGGCTTCTGTGAAGC  50

seq1  CCT-CAGGATT-CCTGCTTAGTTGATTCTG-TGTTCT--CCA-GGGCGTG  89
      ||| ||||||| | |||||||| ||||||| ||||||  ||| |||||||
seq2  CCTACAGGATTACATGCTTAGTGGATTCTGTTGTTCTCACCAGGGGCGTG  100

seq1  T--CCTCCGGGTATC-CTCAACCT-CTCTAGC-TACCATCATCCTTCCTC  134
      |  | |||||||||| |||||||| ||||||| |||||||||||||||||
seq2  TCACTTCCGGGTATCACTCAACCTCCTCTAGCTTACCATCATCCTTCCTC  150

seq1  TCTCTGTTATTCCAGAATCTCTGAGCTCTGGTGGATTGTGCTAAAGCCGA  184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTATTCCAGAATCTCTGAGCTCTGGTGGATTGTGCTAAAGCCGA  200

seq1  TCCAGAATAACAGAAGCCCTTATAAAGCATCATCTCCCTAATGGGCACTC  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATAACAGAAGCCCTTATAAAGCATCATCTCCCTAATGGGCACTC  250

seq1  TGGGCTTGACTGTCACTGTGAGTCTTGGACTCACTGTTTCCTGTGCTCTG  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGACTGTCACTGTGAGTCTTGGACTCACTGTTTCCTGTGCTCTG  300

seq1  TGTCAAAGTTCAAAAGAGCCCTGGATCCCCACATACACCGCACATCAAGT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGTTCAAAAGAGCCCTGGATCCCCACATACACCGCACATCAAGT  350

seq1  GGTCTCTGAAACCTGTATGATTTCAATATCATTCTATGGAAGGCTGAGGT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGAAACCTGTATGATTTCAATATCATTCTATGGAAGGCTGAGGT  400

seq1  TCCTCACCTGAGACCAGGAGCTCCACGGATTCACTTGGAGGTGACCACAC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCTGAGACCAGGAGCTCCACGGATTCACTTGGAGGTGACCACAC  450

seq1  ATATGGTCTGTTCCTGTCATAACTGTAACATCTGAATATCCATCGCTGGT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTCTGTTCCTGTCATAACTGTAACATCTGAATATCCATCGCTGGT  500

seq1  TGGGGGTCACAGGGCCCACAGAGAACAGGGCGTGGTACTTCCTTGTAGAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTCACAGGGCCCACAGAGAACAGGGCGTGGTACTTCCTTGTAGAG  550

seq1  TTGTTATATTGTGAGTCTTGCATCCATGAGAGCTTCTGTGGTCCTTCTAC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATATTGTGAGTCTTGCATCCATGAGAGCTTCTGTGGTCCTTCTAC  600

seq1  AGTCAGAATGAACCTGTGATTGTTGTGCCAGGACTCACACTGGAGGGTGA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAATGAACCTGTGATTGTTGTGCCAGGACTCACACTGGAGGGTGA  650

seq1  CATACCCTCCTGAAGTTACCACAGGGCTGGCCTGGGCTGAAAGGCTGGGT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCTCCTGAAGTTACCACAGGGCTGGCCTGGGCTGAAAGGCTGGGT  700

seq1  GTCCAGTAGTCTCCTAGGAGAGAAGGAGGAGTCAGTTAAATGTCCGCAGG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTAGTCTCCTAGGAGAGAAGGAGGAGTCAGTTAAATGTCCGCAGG  750

seq1  CCTCATTCTCCTTGGCTCTGAGGTTCCCACAGTGAGGGTGGGCATTCCTG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCTCCTTGGCTCTGAGGTTCCCACAGTGAGGGTGGGCATTCCTG  800

seq1  TTAACAGAGCCAAGTCTGGACAGTTATAACCTGAGTCCTAGGATCCTGTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAGCCAAGTCTGGACAGTTATAACCTGAGTCCTAGGATCCTGTG  850

seq1  TGTTCTCTCACCTGTCACCACCAGCTCCAGGGGGTCACTGTAGCCTGATG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTCACCTGTCACCACCAGCTCCAGGGGGTCACTGTAGCCTGATG  900

seq1  ATTCATCCTGGGTGTTGTAGGAACATCGATATTGACCTGCATTACTCAGG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCCTGGGTGTTGTAGGAACATCGATATTGACCTGCATTACTCAGG  950

seq1  TCTACATTTGAGAGTGAGAATTC  957
      |||||||||||||||||||||||
seq2  TCTACATTTGAGAGTGAGAATTC  973